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Corrigendum to “SKP2 contributes to AKT activation by ubiquitination degradation of PHLPP1, impedes autophagy, and facilitates the survival of thyroid carcinoma” [Molecules and Cells Volume 46, Issue 6, June 2023, 360-373] “SKP2通过PHLPP1的泛素化降解促进AKT活化,阻碍自噬,促进甲状腺癌的存活”[molecular and Cells Volume 46, Issue 6, June 2023, 360-373]的更正。
IF 6.5 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-16 DOI: 10.1016/j.mocell.2025.100266
Yuan Shao , Wanli Ren , Hao Dai , Fangli Yang , Xiang Li , Shaoqiang Zhang , Junsong Liu , Xiaobao Yao , Qian Zhao , Xin Sun , Zhiwei Zheng , Chongwen Xu
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引用次数: 0
Brief guide to detecting ferroptosis 检测铁下垂的简要指南。
IF 6.5 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-10 DOI: 10.1016/j.mocell.2025.100276
Thu-Hang Thi Nghiem , Fedho Kusuma , Jeongmin Park , Yeonsoo Joe , Hun Taeg Chung , Jaeseok Han
Ferroptosis is an iron-dependent, lipid-peroxidation-driven form of regulated cell death that is distinct from apoptosis and necroptosis. Its involvement in various diseases highlights the need for reliable detection strategies. We provide a concise guide for ferroptosis detection, outlining key mechanisms, including iron metabolism, lipid remodeling, and antioxidant failure. Cellular, biochemical, genetic, and morphological methods, including viability assays, lipid reactive oxygen species probes, and electron microscopy, have been used to identify ferroptosis in vitro and in vivo. A multiparametric approach is emphasized to ensure the specificity and reproducibility.
铁下垂是一种铁依赖性,脂质过氧化驱动的调节细胞死亡形式,不同于细胞凋亡和坏死下垂。它对各种疾病的参与突出表明需要可靠的检测战略。我们提供了铁下垂检测的简明指南,概述了关键机制,包括铁代谢,脂质重塑和抗氧化功能衰竭。细胞,生化,遗传和形态学方法,包括活力测定,脂质活性氧(ROS)探针和电子显微镜,已被用于体外和体内鉴定铁下垂。强调多参数方法以确保特异性和再现性。
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引用次数: 0
Charge-dependent localization of Toll-like receptor 5 at the plasma membrane toll样受体5在质膜上的电荷依赖定位。
IF 6.5 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-05 DOI: 10.1016/j.mocell.2025.100275
Ji-Won Huh , Kwangcheon Park , Hyun-Sup Song , Seongryong Kim , You-Me Kim
Proper subcellular localization of Toll-like receptors (TLRs) is essential for initiating appropriate innate immune responses against pathogens while avoiding self-reactivity. Unc-93 homolog B1 (UNC93B1) is known to mediate the intracellular trafficking of nucleotide-sensing TLRs such as TLR9 which undergoes rapid internalization into endolysosomes upon reaching the cell surface. We previously demonstrated that UNC93B1 also facilitates the plasma membrane localization of TLR5, a sensor for bacterial flagellin. Unlike TLR9, TLR5 remained stably at the cell surface under steady-state conditions, suggesting the involvement of distinct sorting mechanisms. Using mutagenesis-based approaches, we found that the cytoplasmic domain of TLR5 is required for its surface retention, whereas the cytoplasmic domain of TLR9 is dispensable for internalization. Notably, TLR5 contains polybasic residues in its C-terminal region, absent in other TLRs. Deletion or alanine substitution of these residues led to constitutive endocytosis of TLR5. Conversely, appending the TLR5 C-terminal region to the C-terminus of TLR9 promoted its surface accumulation. Moreover, when the TLR5 C-terminal sequence was fused to a cytosolic protein along with a myristoylation motif, it mediated membrane association of the cytosolic protein in a charge-dependent manner. We further found that this region can directly interact with phosphatidic acid, an anionic phospholipid enriched in the plasma membrane. These findings reveal an electrostatic mechanism by which TLR5 is selectively retained at the plasma membrane, providing new insight into receptor-specific localization of TLRs.
toll样受体(TLRs)的适当亚细胞定位对于启动针对病原体的适当先天免疫反应而避免自身反应是必不可少的。已知UNC93B1介导TLR9等核苷酸敏感tlr的细胞内运输,TLR9在到达细胞表面后迅速内化到内溶酶体中。我们之前证明了UNC93B1也促进了TLR5的质膜定位,TLR5是细菌鞭毛蛋白的传感器。与TLR9不同,在稳态条件下,TLR5在细胞表面保持稳定,表明其参与了不同的分选机制。使用基于诱变的方法,我们发现TLR5的胞质结构域是其表面保留所必需的,而TLR9的胞质结构域是其内化所必需的。值得注意的是,TLR5在其c端区域含有多碱基残基,这在其他tlr中是不存在的。这些残基的缺失或丙氨酸取代导致TLR5的组成性内吞作用。相反,将TLR5的c端区域附加到TLR9的c端,则促进了TLR9的表面积累。此外,当TLR5 c端序列与肉豆蔻酰化基序融合到胞质蛋白时,它以电荷依赖的方式介导了胞质蛋白的膜结合。我们进一步发现该区域可以直接与磷脂酸相互作用,磷脂酸是一种富含质膜的阴离子磷脂。这些发现揭示了TLR5选择性保留在质膜上的静电机制,为tlr的受体特异性定位提供了新的见解。资料可得性:支持本研究结果的所有数据均可在主稿件和补充信息文件中获得。
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引用次数: 0
Current therapeutic strategies in Parkinson’s disease: Future perspectives 帕金森病的当前治疗策略:未来展望。
IF 6.5 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-04 DOI: 10.1016/j.mocell.2025.100274
Tae Young Kim , Byoung Dae Lee
Parkinson’s disease (PD) is a progressive neurodegenerative disorder characterized by the loss of dopaminergic neurons and the accumulation of misfolded α-synuclein. Current treatments, including dopaminergic medications and deep brain stimulation, provide symptomatic relief but do not halt disease progression. Recent advances in molecular research have enabled the development of disease-modifying strategies targeting key pathogenic mechanisms, such as α-synuclein aggregation, mitochondrial dysfunction, and genetic mutations, including LRRK2 and GBA1. In parallel, pluripotent stem cell-derived dopaminergic neurons have emerged as a scalable and ethically viable source for cell replacement therapy. Early-phase clinical trials have demonstrated the safety and functional integration of these grafts. Ongoing research is now focused on enhancing graft purity, immune compatibility, and anatomical precision, including homotopic transplantation and circuit-level reconstruction. Together, these emerging strategies offer the potential to shift PD treatment paradigms by combining symptomatic control with long-term neural restoration. This review summarizes current therapeutic approaches and highlights recent advances in disease-modifying and regenerative interventions for PD.
帕金森病(PD)是一种进行性神经退行性疾病,其特征是多巴胺能神经元的丧失和错误折叠的α-突触核蛋白的积累。目前的治疗,包括多巴胺能药物和深部脑刺激(DBS),提供症状缓解,但不能停止疾病进展。分子研究的最新进展使得针对关键致病机制的疾病修饰策略得以发展,如α-突触核蛋白聚集、线粒体功能障碍以及包括LRRK2和GBA1在内的基因突变。与此同时,多能干细胞(PSC)衍生的多巴胺能神经元已成为一种可扩展且伦理上可行的细胞替代疗法来源。早期临床试验已经证明了这些移植物的安全性和功能整合性。目前正在进行的研究主要集中在提高移植物纯度、免疫相容性和解剖精度,包括同位移植和电路水平重建。总之,这些新兴的策略通过将症状控制与长期神经恢复相结合,提供了改变PD治疗范式的潜力。本文综述了目前PD的治疗方法,并强调了PD的疾病修饰和再生干预的最新进展。
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引用次数: 0
Role of expression quantitative trait loci (eQTL) in understanding genetic mechanisms underlying common complex diseases. 表达数量性状位点(eQTL)在理解常见复杂疾病遗传机制中的作用。
IF 6.5 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-01 Epub Date: 2025-07-18 DOI: 10.1016/j.mocell.2025.100256
Sung Eun Hong, Murim Choi, Jeongha Lee

Attaining a complete understanding of the genetic architecture underlying common complex traits is challenging due to the substantial contributions of nongenetic factors and the involvement of numerous influencing genes. Genome-wide association studies (GWAS) have identified novel variants associated with such traits, but our understanding of the molecular genetic mechanisms underlying those associations remains limited. Additionally, variants without significant associations from GWAS can influence gene expression, contributing to individual-level variation in traits. This review summarizes the evolution, advancements in, and practical applications of expression quantitative trait loci analysis. Recent large-scale expression quantitative trait loci studies, often at the single-cell level, provide an opportunity to explain how at least some GWAS variants behave and to elucidate the mechanisms underlying individual-level variations. This approach can further be utilized to identify novel drug targets that are tailored to individuals harboring specific genotypes.

由于非遗传因素的巨大贡献和众多影响基因的参与,对共同复杂性状的遗传结构的全面理解是具有挑战性的。全基因组关联研究(GWAS)已经确定了与这些性状相关的新变异,但我们对这些关联背后的分子遗传机制的理解仍然有限。此外,与GWAS没有显著关联的变异可以影响基因表达,从而导致个体水平上的性状变异。本文综述了eQTL分析的发展、进展和实际应用。最近的大规模表达数量性状(eQTL)研究,通常在单细胞水平上,提供了一个机会来解释至少一些GWAS变异的行为,并阐明个体水平变异的机制。这种方法可以进一步用于识别针对具有特定基因型的个体量身定制的新型药物靶点。
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引用次数: 0
Phosphatase regulation in cell division: With emphasis on PP2A-B56. 磷酸酶在细胞分裂中的调控:以PP2A-B56为重点。
IF 6.5 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-01 Epub Date: 2025-07-18 DOI: 10.1016/j.mocell.2025.100255
Junsoo Oh, Yeseul Park, Shinae Park, Og-Geum Woo, Jae-Hoon Lee, Jung-Shin Lee, Taekyung Kim

Protein phosphatase 2A-B56 (PP2A-B56) is a key regulator of mitosis, playing an essential role in maintaining chromosomal stability and ensuring the fidelity of cell division. As a component of the PP2A holoenzyme, the B56 regulatory subunit confers substrate specificity, primarily through interactions with the conserved LxxIxE motif on target proteins. This review highlights the molecular mechanisms by which PP2A-B56 regulates key processes in cell division, including chromosome cohesion and condensation, kinetochore-microtubule attachment, spindle assembly checkpoint silencing, and activation of the anaphase-promoting complex/cyclosome. In meiosis, PP2A-B56 safeguards centromeric cohesion and facilitates the transition between divisions, with recruitment strategies that differ across species. Recent studies also emphasize its role in protecting oocyte quality and fertility by maintaining chromosomal stability. Furthermore, the competition among multiple LxxIxE-containing substrates for PP2A-B56 binding introduces an additional layer of temporal and spatial regulation. Finally, we discuss how perturbations in PP2A-B56 activity contribute to chromosomal instability and tumorigenesis. Understanding of PP2A-B56's substrate recognition and regulatory dynamics provides a framework for therapeutic targeting in disorders involving defective cell division.

蛋白磷酸酶2A-B56 (Protein phosphatase 2A-B56, PP2A-B56)是有丝分裂的关键调控因子,在维持染色体稳定性和保证细胞分裂的保真度方面起着至关重要的作用。作为PP2A全酶的一个组成部分,B56调控亚基主要通过与靶蛋白上保守的LxxIxE基序相互作用赋予底物特异性。本文综述了PP2A-B56调控细胞分裂关键过程的分子机制,包括染色体内聚和凝聚、着丝点-微管附着、纺锤体组装检查点(SAC)沉默和后期促进复合体/环小体(APC/C)的激活。在减数分裂中,PP2A-B56保护着丝粒内聚并促进分裂之间的过渡,其招募策略因物种而异。最近的研究也强调了它通过维持染色体稳定性来保护卵母细胞质量和生育能力的作用。此外,多种含lxxixe的底物之间对PP2A-B56结合的竞争引入了额外的时空调节层。最后,我们讨论了PP2A-B56活性的扰动如何促进染色体不稳定和肿瘤发生。了解PP2A-B56的底物识别和调控动力学为治疗涉及细胞分裂缺陷的疾病提供了一个框架。
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引用次数: 0
Identification and application of bioparts for plant synthetic biology 植物合成生物学启动子和终止子的鉴定与应用。
IF 6.5 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-01 DOI: 10.1016/j.mocell.2025.100273
Hyunjin Koo , Minah Jung , Sangwoo Lee , Sangjin Go , Yong-Min Kim
Plant synthetic biology is an emerging field that combines bioinformatics, computational gene circuit design, and plant science. It has the potential to be applied in various areas, including the production of pharmaceuticals, vaccines, biofuels, and various biomaterials, including plant natural products. This review highlights recent advancements in plant synthetic biology, particularly in the development and application of biological parts such as promoters and terminators, which play a crucial role in precise gene expression regulation. Furthermore, this review clarified the identification and utilization of bidirectional promoters, which are essential for gene pyramiding, and the significance of maintaining a balance between promoter and terminator combinations for the stability of transgene expression. Furthermore, large-scale identification of promoters using Assay for Transposase-Accessible Chromatin using sequencing and Self-Transcribing Active Regulatory Region sequencing, as well as deep-learning-based models for predicting promoter regions and their transcriptional activity, are discussed. This review provides insights into the identification and application of bioparts in plant synthetic biology to achieve efficient and precise gene regulation.
植物合成生物学是生物信息学、计算基因电路设计和植物科学相结合的新兴领域。它有可能应用于各个领域,包括生产药品、疫苗、生物燃料和各种生物材料,包括植物天然产物(PNP)。本文综述了近年来植物合成生物学的研究进展,特别是启动子和终止子等在基因精确表达调控中起重要作用的生物组分的开发和应用。此外,本文还阐述了基因金字塔构建所必需的双向启动子的鉴定和利用,以及维持启动子和终止子组合平衡对转基因表达稳定性的重要性。此外,本文还讨论了利用ATAC-Seq和STARR-Seq对启动子进行大规模鉴定,以及基于深度学习的启动子区域及其转录活性预测模型。本文综述了生物载体在植物合成生物学中的识别和应用,以实现高效、精确的基因调控。
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引用次数: 0
Decoding genomic rearrangements for cancer driver discovery 解码癌症中的基因组重排:新驱动发现之路。
IF 6.5 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-30 DOI: 10.1016/j.mocell.2025.100272
Enyoung Seo , Sooyeon Park , Inho Park , Jinhyuk Bhin
Somatically acquired genomic rearrangements are common genomic alterations that contribute to malignancy by altering the expression or activity of cancer-related genes in human cancer. Genomic rearrangements play a crucial role in tumor development by contributing to driver events in approximately 25% of cancer patients. Most rearrangements are nonrecurrent and lack functional impact. However, some rearrangements produce functional transcripts and act as cancer drivers that may be therapeutic targets. The growing availability of whole-genome and matched RNA-sequencing data from large patient cohorts offers tremendous opportunities to identify novel, clinically relevant drivers arising from genomic rearrangements. In this review, we summarize current knowledge of driver rearrangements as therapeutic targets and highlight recent discoveries of functional transcripts such as intergenic fusions generated by noncanonical rearrangements. We also discuss computational approaches to decode rearrangement patterns and leverage large-scale whole-genome data to discover novel drivers.
体细胞获得性基因组重排是通过改变人类癌症相关基因的表达或活性而导致恶性肿瘤的常见基因组改变。在大约25%的癌症患者中,基因组重排在肿瘤发展中起着至关重要的作用。大多数重排是非经常性的,缺乏功能影响。然而,一些重排产生功能性转录本,并作为可能成为治疗靶点的癌症驱动因子。来自大型患者队列的全基因组和匹配rna测序数据的不断增加,为鉴定基因组重排引起的新的临床相关驱动因素提供了巨大的机会。在这篇综述中,我们总结了驱动重排作为治疗靶点的现有知识,并强调了最近发现的功能性转录本,如由非规范重排产生的基因间融合。我们还讨论了解码重排模式的计算方法,并利用大规模全基因组数据来发现新的驱动因素。
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引用次数: 0
Post ingestive systemic nutrient sensing for whole-body homeostasis 对全身平衡的营养感知:超越细胞水平。
IF 6.5 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-29 DOI: 10.1016/j.mocell.2025.100271
Gahbien Lee , Jiyeon Lee , Greg S.B. Suh , Yangkyun Oh
Systemic nutrient sensing is a fundamental process that aligns nutrient availability with an organism’s metabolic demands. This mini-review explores nutrient sensors in the intestine, pancreas, portal vein, and the brain—organs that detect and convey nutrient status to other tissues via neuronal and hormonal signaling. Unlike oral taste receptors that sense external nutrient inputs, these nutrient sensors monitor post ingestive levels of macronutrients (carbohydrates, proteins, and lipids) and micronutrients (vitamins and essential trace elements such as calcium, magnesium, and zinc) within the body. We describe the specific mechanisms by which each organ discerns fluctuations in nutrient concentration and discuss how these signals integrate into endocrine and neural circuits to maintain whole-body nutrient balance. Finally, by comparing mammalian and invertebrate models such as Drosophila, we offer a comprehensive perspective on how organ-level nutrient sensing upholds metabolic homeostasis across diverse species.
系统的营养感知是一个基本的过程,使营养可用性与生物体的代谢需求保持一致。这篇综述探讨了肠道、胰腺、门静脉和脑器官中的营养传感器,它们通过神经元和激素信号检测并将营养状态传递给其他组织。与感知外部营养输入的口腔味觉感受器不同,这些营养感受器监测摄入后体内大量营养素(碳水化合物、蛋白质和脂类)和微量营养素(维生素和钙、镁和锌等必需微量元素)的水平。我们描述了每个器官识别营养浓度波动的具体机制,并讨论了这些信号如何整合到内分泌和神经回路中以维持全身营养平衡。最后,通过比较哺乳动物和无脊椎动物(如果蝇)的模型,我们提供了一个全面的视角,了解器官水平的营养感知如何维持不同物种的代谢稳态。
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引用次数: 0
Editorial Board Members/Copyright 编辑委员会成员/版权
IF 6.5 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-08-20 DOI: 10.1016/S1016-8478(25)00093-7
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引用次数: 0
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