首页 > 最新文献

Mutation research. Genetic toxicology and environmental mutagenesis最新文献

英文 中文
New Approach Methods (NAMs) for genotoxicity assessment of nano- and advanced materials; Advantages and challenges 纳米和先进材料遗传毒性评价的新方法优势与挑战
IF 2.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-03-30 DOI: 10.1016/j.mrgentox.2025.503867
Arno C. Gutleb , Sivakumar Murugadoss , Maciej Stępnik , Tanima SenGupta , Naouale El Yamani , Eleonora Marta Longhin , Ann-Karin Hardie Olsen , Ewelina Wyrzykowska , Karolina Jagiello , Beata Judzinska , Sebastien Cambier , Tatiana Honza , Erin McFadden , Sergey Shaposhnikov , Tomasz Puzyn , Tommaso Serchi , Pamina Weber , Emma Arnesdotter , Vier Skakalova , Katerina Jirsova , Maria Dusinska
Genotoxicity assessment is essential for ensuring chemical safety and mitigating risks to human health and the environment. Traditional methods, reliant on animal models, are time-consuming, costly, and raise ethical concerns. New Approach Methods (NAMs) offer innovative, cost-effective, and ethical alternatives, playing a pivotal role in both traditional and next-generation risk assessment (NGRA) by minimizing the need for animal testing, particularly in genotoxicity evaluations. However, the development of NAMs often overlooks the particular physicochemical properties of nanomaterials (NMs), which significantly influence their toxicological behaviour and can interfere with genotoxicity evaluation. This underscores an urgent need for the standardization and adaptation of NAMs to address nano- and advanced material-specific genotoxicity challenges. In this review, we summarize the challenges associated with genotoxicity testing of NMs and highlight the suitability of existing in vitro and in silico NAMs for NMs and advanced materials, enabling genotoxicity testing across various exposure routes and organ systems. Despite considerable progress, regulatory validation remains constrained by the absence of approved test guidelines and standardized protocols. To achieve regulatory acceptance, it is crucial to adapt NAMs to NM-specific exposure scenarios, refine test systems to better mimic human biology, develop tailored in vitro protocols, and ensure thorough characterisation of NMs both in pristine form and dispersed in culture medium. Collaborative efforts among scientists, regulators, industry, and advocacy groups are vital to improving the reliability and regulatory acceptance of NAMs. By addressing these challenges, NAMs have the potential to revolutionize genotoxicity risk assessment, advancing it towards a more sustainable, efficient and ethical framework.
遗传毒性评估对于确保化学品安全和减轻对人类健康和环境的风险至关重要。传统方法依赖于动物模型,耗时、昂贵,并引起伦理问题。新方法(NAMs)提供了创新的、具有成本效益的和合乎道德的替代方案,通过最大限度地减少动物试验的需要,在传统和下一代风险评估(NGRA)中发挥关键作用,特别是在遗传毒性评估中。然而,纳米材料的发展往往忽视了纳米材料(NMs)的特殊物理化学性质,这些性质会显著影响其毒理学行为,并可能干扰遗传毒性评估。这强调了NAMs标准化和适应的迫切需要,以解决纳米和先进材料特异性遗传毒性的挑战。在这篇综述中,我们总结了与纳米粒子遗传毒性测试相关的挑战,并强调了现有的体外和硅纳米粒子对纳米粒子和先进材料的适用性,从而能够在各种暴露途径和器官系统中进行遗传毒性测试。尽管取得了相当大的进展,但由于缺乏批准的测试指南和标准化协议,监管验证仍然受到限制。为了获得监管认可,关键是要使纳米颗粒适应纳米颗粒特定的暴露情况,完善测试系统以更好地模拟人类生物学,开发量身定制的体外方案,并确保纳米颗粒在原始形式和分散在培养基中的彻底表征。科学家、监管机构、行业和倡导团体之间的合作努力对于提高NAMs的可靠性和监管接受度至关重要。通过应对这些挑战,NAMs有可能彻底改变遗传毒性风险评估,推动其朝着更可持续、更有效和更合乎道德的框架发展。
{"title":"New Approach Methods (NAMs) for genotoxicity assessment of nano- and advanced materials; Advantages and challenges","authors":"Arno C. Gutleb ,&nbsp;Sivakumar Murugadoss ,&nbsp;Maciej Stępnik ,&nbsp;Tanima SenGupta ,&nbsp;Naouale El Yamani ,&nbsp;Eleonora Marta Longhin ,&nbsp;Ann-Karin Hardie Olsen ,&nbsp;Ewelina Wyrzykowska ,&nbsp;Karolina Jagiello ,&nbsp;Beata Judzinska ,&nbsp;Sebastien Cambier ,&nbsp;Tatiana Honza ,&nbsp;Erin McFadden ,&nbsp;Sergey Shaposhnikov ,&nbsp;Tomasz Puzyn ,&nbsp;Tommaso Serchi ,&nbsp;Pamina Weber ,&nbsp;Emma Arnesdotter ,&nbsp;Vier Skakalova ,&nbsp;Katerina Jirsova ,&nbsp;Maria Dusinska","doi":"10.1016/j.mrgentox.2025.503867","DOIUrl":"10.1016/j.mrgentox.2025.503867","url":null,"abstract":"<div><div>Genotoxicity assessment is essential for ensuring chemical safety and mitigating risks to human health and the environment. Traditional methods, reliant on animal models, are time-consuming, costly, and raise ethical concerns. New Approach Methods (NAMs) offer innovative, cost-effective, and ethical alternatives, playing a pivotal role in both traditional and next-generation risk assessment (NGRA) by minimizing the need for animal testing, particularly in genotoxicity evaluations. However, the development of NAMs often overlooks the particular physicochemical properties of nanomaterials (NMs), which significantly influence their toxicological behaviour and can interfere with genotoxicity evaluation. This underscores an urgent need for the standardization and adaptation of NAMs to address nano- and advanced material-specific genotoxicity challenges. In this review, we summarize the challenges associated with genotoxicity testing of NMs and highlight the suitability of existing <em>in vitro</em> and <em>in silico</em> NAMs for NMs and advanced materials, enabling genotoxicity testing across various exposure routes and organ systems. Despite considerable progress, regulatory validation remains constrained by the absence of approved test guidelines and standardized protocols. To achieve regulatory acceptance, it is crucial to adapt NAMs to NM-specific exposure scenarios, refine test systems to better mimic human biology, develop tailored <em>in vitro</em> protocols, and ensure thorough characterisation of NMs both in pristine form and dispersed in culture medium. Collaborative efforts among scientists, regulators, industry, and advocacy groups are vital to improving the reliability and regulatory acceptance of NAMs. By addressing these challenges, NAMs have the potential to revolutionize genotoxicity risk assessment, advancing it towards a more sustainable, efficient and ethical framework.</div></div>","PeriodicalId":18799,"journal":{"name":"Mutation research. Genetic toxicology and environmental mutagenesis","volume":"904 ","pages":"Article 503867"},"PeriodicalIF":2.3,"publicationDate":"2025-03-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143768376","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
DNA damage and oxidative stress responses to pollution of Mytilus galloprovincialis L. from the Izmir Bay (Turkey): Seasonal evaluation 土耳其伊兹密尔湾贻贝(Mytilus galloprovincialis L.)对污染的DNA损伤和氧化应激反应:季节评价
IF 2.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-03-23 DOI: 10.1016/j.mrgentox.2025.503866
Ebru Yayla , Cem Guler , Aylin Buhur , Nefise Ulku Karabay Yavasoglu , Selma Katalay , Cinel Koksal Karayildirim
In the current study, the relationship between DNA damage and heavy metal pollutions was evaluated by sampling mussels from Izmir Bay (Turkey), which has different anthropogenic impacts in the Aegean Sea. M. galloprovincialis was selected as a bioindicator organism to determine the heavy metal amounts, SOD, CAT, TBARS levels and to detect the DNA damage in 4 different stations of Izmir Bay. A significant increase was detected in all heavy metals in the digestive gland tissue of the mussels collected from the Alsancak in summer compared to spring. Especially, Zn levels of gills and digestive glands of mussels collected from Alsancak in summer were detected 22.411 and 40.447 μg/g, respectively. According to MPI values, significant differences were determined in Urla and the highest accumulation was calculated in gill tissue. The activities of SOD and CAT enzymes were found at a very high level in mussel gills and glands at all stations except Urla in summer compared to them in spring. Additionally, TBARS levels were higher in mussel gills and gonad tissues at Inciralti and Urla stations in summer compared to spring samples. DNA damage classification in mussel hemocytes from all stations was identified according to the Comet assay. The test results showed that a statistically significant decrease in DNA% in comet tails in hemocytes of mussels collected from all stations in Summer was found compared to them in Spring. Also, at all stations except Alsancak, the genetic damage index decreased in summer compared to spring. While a positive correlation was detected between heavy metal pollution and DNA damage in mussels taken from Alsancak and Inciraltı (r = 0.734), a significant correlation was detected in Pasaport and Urla in both seasons (r = 0.999). This study indicates that heavy metal contaminations in the mussels of Izmir Bay are still an environmental problem on this area. DNA damage is an appropriate biomarker for genotoxicity evaluation even in low heavy metal contaminated areas.
本研究通过对爱琴海受到不同人为影响的土耳其伊兹密尔湾贻贝取样,评估了DNA损伤与重金属污染之间的关系。在伊兹密尔湾4个不同监测站,选取加洛毛霉作为生物指示生物,测定土壤重金属含量、SOD、CAT、TBARS水平及DNA损伤检测。与春季相比,夏季在阿尔桑卡克采集的贻贝的消化腺组织中检测到的所有重金属都显着增加。其中,夏季采集的贻贝鳃和消化腺锌含量分别为22.411和40.447 μg/g。根据MPI值,确定了Urla的显著差异,并计算了鳃组织的最高蓄积量。除乌拉市外,夏季各试验点贻贝鳃和腺体SOD和CAT酶活性均高于春季。此外,与春季样本相比,夏季Inciralti和Urla站贻贝鳃和性腺组织中的TBARS水平较高。所有站点贻贝血细胞的DNA损伤分类根据Comet测定法确定。结果表明,夏季采集贻贝血细胞中彗尾DNA含量较春季显著降低。此外,除Alsancak外,所有站点的遗传损害指数在夏季都比春季下降。在Alsancak和inciralti采集的贻贝中,重金属污染与DNA损伤呈正相关(r = 0.734),而在Pasaport和Urla采集的贻贝中,两个季节重金属污染与DNA损伤呈显著相关(r = 0.999)。该研究表明,伊兹密尔湾贻贝重金属污染仍然是该地区的环境问题。即使在低重金属污染地区,DNA损伤也是一种适宜的遗传毒性评价生物标志物。
{"title":"DNA damage and oxidative stress responses to pollution of Mytilus galloprovincialis L. from the Izmir Bay (Turkey): Seasonal evaluation","authors":"Ebru Yayla ,&nbsp;Cem Guler ,&nbsp;Aylin Buhur ,&nbsp;Nefise Ulku Karabay Yavasoglu ,&nbsp;Selma Katalay ,&nbsp;Cinel Koksal Karayildirim","doi":"10.1016/j.mrgentox.2025.503866","DOIUrl":"10.1016/j.mrgentox.2025.503866","url":null,"abstract":"<div><div>In the current study, the relationship between DNA damage and heavy metal pollutions was evaluated by sampling mussels from Izmir Bay (Turkey), which has different anthropogenic impacts in the Aegean Sea. <em>M. galloprovincialis</em> was selected as a bioindicator organism to determine the heavy metal amounts, SOD, CAT, TBARS levels and to detect the DNA damage in 4 different stations of Izmir Bay. A significant increase was detected in all heavy metals in the digestive gland tissue of the mussels collected from the Alsancak in summer compared to spring. Especially, Zn levels of gills and digestive glands of mussels collected from Alsancak in summer were detected 22.411 and 40.447 μg/g, respectively. According to MPI values, significant differences were determined in Urla and the highest accumulation was calculated in gill tissue. The activities of SOD and CAT enzymes were found at a very high level in mussel gills and glands at all stations except Urla in summer compared to them in spring. Additionally, TBARS levels were higher in mussel gills and gonad tissues at Inciralti and Urla stations in summer compared to spring samples. DNA damage classification in mussel hemocytes from all stations was identified according to the Comet assay. The test results showed that a statistically significant decrease in DNA% in comet tails in hemocytes of mussels collected from all stations in Summer was found compared to them in Spring. Also, at all stations except Alsancak, the genetic damage index decreased in summer compared to spring. While a positive correlation was detected between heavy metal pollution and DNA damage in mussels taken from Alsancak and Inciraltı (r = 0.734), a significant correlation was detected in Pasaport and Urla in both seasons (r = 0.999). This study indicates that heavy metal contaminations in the mussels of Izmir Bay are still an environmental problem on this area. DNA damage is an appropriate biomarker for genotoxicity evaluation even in low heavy metal contaminated areas.</div></div>","PeriodicalId":18799,"journal":{"name":"Mutation research. Genetic toxicology and environmental mutagenesis","volume":"904 ","pages":"Article 503866"},"PeriodicalIF":2.3,"publicationDate":"2025-03-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143768375","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Aminated polystyrene and DNA strand breaks in A549, Caco-2, THP-1 and U937 human cell lines 在A549, Caco-2, THP-1和U937人类细胞系中胺化聚苯乙烯和DNA链断裂
IF 2.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-03-05 DOI: 10.1016/j.mrgentox.2025.503865
Yuxin Liu, Peter Møller , Martin Roursgaard
Plastic is used extensively worldwide. However, plastic particles that are less than 1000 nm (i.e. nanoplastics) may be hazardous to human cells. Nanoplastics might be manufactured intentionally or be formed in the environment by degradation of larger plastic items. Ingestion and inhalation are the two most common routes of human exposure to nanoplastics, indicating that epithelial cells have direct exposure. However, immune cells will also interact with particles during tissue inflammation. An assessment of published studies suggests that polystyrene (PS) particles generate higher levels of DNA damage in immune cells compared to epithelial cells, although it has not been formally studied under the same experimental condition. To investigate this, we assessed cytotoxicity, oxidative stress and DNA strand breaks in lung epithelial (A549) cells, intestinal epithelial (Caco-2) cells, and two monocytes (THP-1 and U937) after exposure to amine-functionalized polystyrene particles (PS-NH2) with declared particle size of 240 nm. No cytotoxicity or intracellular reactive oxygen species production were found at concentrations up to 200 µg/mL. Exposure to PS-NH2 was associated with glutathione depletion in A549 cells. However, there was no increase in the level of DNA strand breaks, measured by the comet assay, in any of the cell lines under standard assay conditions. Diethyl maleate treatment was used to render cells susceptible to oxidative stress. By itself, diethyl maleate treatment led to approximately 50 % glutathione depletion and increased DNA strand breaks, but additional DNA damage was not observed in cells by PS-NH2 exposure in A549, Caco-2, THP-1 and U937 cells.
塑料在世界范围内被广泛使用。然而,小于1000 纳米的塑料颗粒(即纳米塑料)可能对人体细胞有害。纳米塑料可能是故意制造的,也可能是在环境中通过降解较大的塑料制品而形成的。摄入和吸入是人类接触纳米塑料的两种最常见途径,这表明上皮细胞直接接触纳米塑料。然而,在组织炎症期间,免疫细胞也会与颗粒相互作用。一项对已发表研究的评估表明,与上皮细胞相比,聚苯乙烯(PS)颗粒在免疫细胞中产生更高水平的DNA损伤,尽管尚未在相同的实验条件下进行正式研究。为了研究这一点,我们评估了暴露于胺功能化聚苯乙烯颗粒(PS-NH2)后肺上皮细胞(A549)、肠上皮细胞(Caco-2)和两个单核细胞(THP-1和U937)的细胞毒性、氧化应激和DNA链断裂。PS-NH2的粒径为240 nm。当浓度高达200µg/mL时,未发现细胞毒性或细胞内活性氧产生。暴露于PS-NH2与A549细胞中的谷胱甘肽耗竭有关。然而,在标准实验条件下,通过彗星实验测量的任何细胞系的DNA链断裂水平都没有增加。用马来酸二乙酯处理使细胞对氧化应激敏感。就其本身而言,马来酸二乙酯处理导致大约50%的谷胱甘肽消耗和增加的DNA链断裂,但在A549、cco -2、THP-1和U937细胞中,PS-NH2暴露未观察到额外的DNA损伤。
{"title":"Aminated polystyrene and DNA strand breaks in A549, Caco-2, THP-1 and U937 human cell lines","authors":"Yuxin Liu,&nbsp;Peter Møller ,&nbsp;Martin Roursgaard","doi":"10.1016/j.mrgentox.2025.503865","DOIUrl":"10.1016/j.mrgentox.2025.503865","url":null,"abstract":"<div><div>Plastic is used extensively worldwide. However, plastic particles that are less than 1000 nm (i.e. nanoplastics) may be hazardous to human cells. Nanoplastics might be manufactured intentionally or be formed in the environment by degradation of larger plastic items. Ingestion and inhalation are the two most common routes of human exposure to nanoplastics, indicating that epithelial cells have direct exposure. However, immune cells will also interact with particles during tissue inflammation. An assessment of published studies suggests that polystyrene (PS) particles generate higher levels of DNA damage in immune cells compared to epithelial cells, although it has not been formally studied under the same experimental condition. To investigate this, we assessed cytotoxicity, oxidative stress and DNA strand breaks in lung epithelial (A549) cells, intestinal epithelial (Caco-2) cells, and two monocytes (THP-1 and U937) after exposure to amine-functionalized polystyrene particles (PS-NH<sub>2</sub>) with declared particle size of 240 nm. No cytotoxicity or intracellular reactive oxygen species production were found at concentrations up to 200 µg/mL. Exposure to PS-NH<sub>2</sub> was associated with glutathione depletion in A549 cells. However, there was no increase in the level of DNA strand breaks, measured by the comet assay, in any of the cell lines under standard assay conditions. Diethyl maleate treatment was used to render cells susceptible to oxidative stress. By itself, diethyl maleate treatment led to approximately 50 % glutathione depletion and increased DNA strand breaks, but additional DNA damage was not observed in cells by PS-NH<sub>2</sub> exposure in A549, Caco-2, THP-1 and U937 cells.</div></div>","PeriodicalId":18799,"journal":{"name":"Mutation research. Genetic toxicology and environmental mutagenesis","volume":"903 ","pages":"Article 503865"},"PeriodicalIF":2.3,"publicationDate":"2025-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143576939","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The dose-, LET-, and gene-dependent patterns of intragenic DNA changes underlying recessive visible mutations at the autosomal gene cinnabar of Drosophila melanogaster 黑腹果蝇常染色体基因朱砂隐性可见突变的基因内 DNA 变化的剂量、LET 和基因依赖模式
IF 2.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-02-26 DOI: 10.1016/j.mrgentox.2025.503857
I.D. Alexandrov, M.V. Alexandrova, K.P. Afanasyeva, N.E. Kharchenko
Sequence analysis of 2 spontaneous, 26 γ-ray- and 10 neutron/neutron + γ-ray-induced cn gene/point mutants was performed. One spontaneous mutant had the entire maternal сn1 sequence studied (4644 bp, full gene conversion). The second mutant contained cluster of DNA changes consisting of a partial gene conversion (tract length of 1087 bp), as well as an extended deletion (47 bp) and one single-base substitution in exon 2. Almost the same spectra of DNA changes in γ-ray- and neutron/neutron + γ-ray-induced cn mutants made it possible to unite them into one group of 36 radiation-induced mutants. Among the 36 mutants studied, 5 mutants (13.9 %) did’t have any DNA changes within the studied sequence of the cn genomic region. The 31 remaining mutants contained 36 DNA changes. There were 3 (8.3 %) single-base substitutions, 2 (5.5 %) frameshifts or indels 1–3-bp long, 14 (38.9 %) extended deletions of 5–21 bp in length, 12 (33.3 %) gene conversion events, 2 (5.5 %) large insertion (∼ 6.0 kb) of unidentified origin, and 1 (2.8 %) large (640 bp) deletion, 1 (2.8 %) extended insertion (8 bp), 1 (2.8 %) insertion/duplication (505 bp). Among 12 gene conversion events, there were 7 full and 5 partial events. The tract length in the mutants with partial conversion varies from 44 to 2247 bp. According to literature data such DNA changes as gene conversion, extended deletions, and indels must be the products of homologous recombination, single-strand annealing, and non-homologous ends joining repair pathways, respectively. We propose that the initial DNA lesions for DNA changes are different types of DNA double-strand breaks (DSB): (i) complex DSBs, (ii) less complex DSBs, and (iii) simple DSBs. Comparing the spectrum of DNA changes in the cn gene/point mutants with that in black one, it is important to note that the ratio of DNA changes in various genomic regions may be different.
对2个自发、26个γ射线-和10个中子/中子+ γ射线诱导的cn基因/点突变体进行了序列分析。一个自发突变体研究了整个母系序列(4644 bp,完全基因转换)。第二个突变体包含DNA变化簇,包括部分基因转换(束长度为1087 bp),以及扩展缺失(47 bp)和外显子2的一个单碱基替换。在γ射线和中子/中子+ γ射线诱导的cn突变体中,几乎相同的DNA变化谱使它们有可能被归为一组36个辐射诱导的突变体。在研究的36个突变体中,5个(13.9%)突变体在cn基因组区研究序列内没有任何DNA变化。剩下的31个突变体包含36个DNA变化。有3个(8.3%)单碱基替换,2个(5.5%)长1 - 3 bp的帧移或索引,14个(38.9%)长度为5-21 bp的扩展缺失,12个(33.3%)基因转换事件,2个(5.5%)来源不明的大插入(~ 6.0 kb), 1个(2.8%)大缺失(640 bp), 1个(2.8%)扩展插入(8 bp), 1个(2.8%)插入/重复(505 bp)。在12个基因转化事件中,完全转化事件7个,部分转化事件5个。部分转化的突变体的束长度为44 ~ 2247 bp。根据文献资料,基因转换、延长缺失和插入等DNA变化,必须分别是同源重组、单链退火和非同源末端加入修复途径的产物。我们提出DNA变化的初始DNA损伤是不同类型的DNA双链断裂(DSB):(i)复杂的DSB, (ii)不太复杂的DSB,和(iii)简单的DSB。将cn基因/点突变体的DNA变化谱与黑色突变体的DNA变化谱进行比较,值得注意的是,不同基因组区域的DNA变化比例可能不同。
{"title":"The dose-, LET-, and gene-dependent patterns of intragenic DNA changes underlying recessive visible mutations at the autosomal gene cinnabar of Drosophila melanogaster","authors":"I.D. Alexandrov,&nbsp;M.V. Alexandrova,&nbsp;K.P. Afanasyeva,&nbsp;N.E. Kharchenko","doi":"10.1016/j.mrgentox.2025.503857","DOIUrl":"10.1016/j.mrgentox.2025.503857","url":null,"abstract":"<div><div>Sequence analysis of 2 spontaneous, 26 γ-ray- and 10 neutron/neutron + γ-ray-induced <em>cn</em> gene/point mutants was performed. One spontaneous mutant had the entire maternal <em>сn</em><sup><em>1</em></sup> sequence studied (4644 bp, full gene conversion). The second mutant contained cluster of DNA changes consisting of a partial gene conversion (tract length of 1087 bp), as well as an extended deletion (47 bp) and one single-base substitution in exon 2. Almost the same spectra of DNA changes in γ-ray- and neutron/neutron + γ-ray-induced <em>cn</em> mutants made it possible to unite them into one group of 36 radiation-induced mutants. Among the 36 mutants studied, 5 mutants (13.9 %) did’t have any DNA changes within the studied sequence of the <em>cn</em> genomic region. The 31 remaining mutants contained 36 DNA changes. There were 3 (8.3 %) single-base substitutions, 2 (5.5 %) frameshifts or indels 1–3-bp long, 14 (38.9 %) extended deletions of 5–21 bp in length, 12 (33.3 %) gene conversion events, 2 (5.5 %) large insertion (∼ 6.0 kb) of unidentified origin, and 1 (2.8 %) large (640 bp) deletion, 1 (2.8 %) extended insertion (8 bp), 1 (2.8 %) insertion/duplication (505 bp). Among 12 gene conversion events, there were 7 full and 5 partial events. The tract length in the mutants with partial conversion varies from 44 to 2247 bp. According to literature data such DNA changes as gene conversion, extended deletions, and indels must be the products of homologous recombination, single-strand annealing, and non-homologous ends joining repair pathways, respectively. We propose that the initial DNA lesions for DNA changes are different types of DNA double-strand breaks (DSB): (i) complex DSBs, (ii) less complex DSBs, and (iii) simple DSBs. Comparing the spectrum of DNA changes in the <em>cn</em> gene/point mutants with that in <em>black</em> one, it is important to note that the ratio of DNA changes in various genomic regions may be different.</div></div>","PeriodicalId":18799,"journal":{"name":"Mutation research. Genetic toxicology and environmental mutagenesis","volume":"903 ","pages":"Article 503857"},"PeriodicalIF":2.3,"publicationDate":"2025-02-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143529363","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
AI/ML modeling to enhance the capability of in vitro and in vivo tests in predicting human carcinogenicity 人工智能/机器学习建模,提高体外和体内试验预测人类致癌性的能力
IF 2.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-02-26 DOI: 10.1016/j.mrgentox.2025.503858
Ani Tevosyan , Hrach Yeghiazaryan , Gohar Tadevosyan , Lilit Apresyan , Vahe Atoyan , Anna Misakyan , Zaven Navoyan , Helga Stopper , Nelly Babayan , Lusine Khondkaryan
This study aimed to develop an in silico model for predicting human carcinogenicity using advanced deep learning techniques, specifically Graph Neural Networks (GNN), through a multitask learning (MTL) approach. The MTL framework leveraged auxiliary tasks, including mutagenicity, genotoxicity, animal carcinogenicity, androgen and estrogen receptor binding, to enhance the model's predictive capabilities for the primary task of human carcinogenicity. Three distinct GNN architectures were used alongside various combinations of auxiliary tasks to evaluate the variations in performance metrics. Results demonstrated that multitask learning significantly enhances the predictive performance of GNN models compared to single-task learning for predicting human carcinogenicity. The best performed MTL model achieved an area under the curve of 0.89, along with a balanced accuracy of 82 %, and sensitivity and specificity values of 0.75 and 0.89, respectively. The developed multitask learning (MTL) models function on tasks that represent assays for identifying both genotoxic and non-genotoxic carcinogens, thereby enhancing the model's capability to predict human carcinogenic risk with greater accuracy. The advanced GNN models demonstrated effectiveness in addressing data imbalance issues frequently observed in biological datasets, mitigating the bias that typically favors one class over another. Overall, these results underscore the promise of GNN-based MTL models for reliable chemical screening and prioritization, particularly in predicting human carcinogenicity.
本研究旨在通过多任务学习(MTL)方法,利用先进的深度学习技术,特别是图神经网络(GNN),开发一种预测人类致癌性的计算机模型。MTL框架利用辅助任务,包括诱变性、遗传毒性、动物致癌性、雄激素和雌激素受体结合,以增强模型对人类致癌性主要任务的预测能力。使用三种不同的GNN架构以及各种辅助任务组合来评估性能指标的变化。结果表明,在预测人类致癌性方面,与单任务学习相比,多任务学习显著提高了GNN模型的预测性能。最佳MTL模型的曲线下面积为0.89,平衡精度为82%,灵敏度和特异性值分别为0.75和0.89。开发的多任务学习(MTL)模型在代表识别遗传毒性和非遗传毒性致癌物的检测任务上发挥作用,从而提高了模型预测人类致癌风险的能力。先进的GNN模型证明了在解决生物数据集中经常观察到的数据不平衡问题方面的有效性,减轻了通常倾向于一类而不是另一类的偏见。总的来说,这些结果强调了基于gnn的MTL模型在可靠的化学筛选和优先排序方面的前景,特别是在预测人类致癌性方面。
{"title":"AI/ML modeling to enhance the capability of in vitro and in vivo tests in predicting human carcinogenicity","authors":"Ani Tevosyan ,&nbsp;Hrach Yeghiazaryan ,&nbsp;Gohar Tadevosyan ,&nbsp;Lilit Apresyan ,&nbsp;Vahe Atoyan ,&nbsp;Anna Misakyan ,&nbsp;Zaven Navoyan ,&nbsp;Helga Stopper ,&nbsp;Nelly Babayan ,&nbsp;Lusine Khondkaryan","doi":"10.1016/j.mrgentox.2025.503858","DOIUrl":"10.1016/j.mrgentox.2025.503858","url":null,"abstract":"<div><div>This study aimed to develop an in silico model for predicting human carcinogenicity using advanced deep learning techniques, specifically Graph Neural Networks (GNN), through a multitask learning (MTL) approach. The MTL framework leveraged auxiliary tasks, including mutagenicity, genotoxicity, animal carcinogenicity, androgen and estrogen receptor binding, to enhance the model's predictive capabilities for the primary task of human carcinogenicity. Three distinct GNN architectures were used alongside various combinations of auxiliary tasks to evaluate the variations in performance metrics. Results demonstrated that multitask learning significantly enhances the predictive performance of GNN models compared to single-task learning for predicting human carcinogenicity. The best performed MTL model achieved an area under the curve of 0.89, along with a balanced accuracy of 82 %, and sensitivity and specificity values of 0.75 and 0.89, respectively. The developed multitask learning (MTL) models function on tasks that represent assays for identifying both genotoxic and non-genotoxic carcinogens, thereby enhancing the model's capability to predict human carcinogenic risk with greater accuracy. The advanced GNN models demonstrated effectiveness in addressing data imbalance issues frequently observed in biological datasets, mitigating the bias that typically favors one class over another. Overall, these results underscore the promise of GNN-based MTL models for reliable chemical screening and prioritization, particularly in predicting human carcinogenicity.</div></div>","PeriodicalId":18799,"journal":{"name":"Mutation research. Genetic toxicology and environmental mutagenesis","volume":"903 ","pages":"Article 503858"},"PeriodicalIF":2.3,"publicationDate":"2025-02-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143549444","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Safety evaluation of ethanolic extract from aerial flowering part of spiny globe thistle (Echinops spinosus) in mice: Phytochemical screening and genotoxicity 刺蓟空中开花部分乙醇提取物对小鼠的安全性评价:植物化学筛选和遗传毒性
IF 2.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.mrgentox.2025.503854
Kawthar A. Diab , Maha A. Fahmy , Entessar E. Hassan , Ahmed M. Nagy , Ayman A. Farghaly , Emad M. Hassan , Enayat A. Omara
Echinops spinosus is widely used by the population due to its therapeutic potential; however, there is no evidence in the literature that substantiates its safety. Therefore, this study aimed to identify the chemical constituents of E. spinosus extract via GC/MS analysis and evaluate its cytotoxicity and genotoxicity. Male mice were orally given three doses of E. spinosus extract (250, 500, and 1000 mg/kg) for four weeks. Blood and tissue samples were collected after the end of treatment. GC–MS results revealed 73 compounds in the E. spinosus extract, including sugars, sugar alcohols, fatty acids, organic acids, amino acids, and nitrogenous compounds. In vitro experiments revealed that E. spinosus was not cytotoxic to human colon, prostate, or breast cancer cells. In vivo experiments showed that E. spinosus extract did not significantly induce chromosomal damage in the bone marrow, primary spermatocyte, or sperm morphology abnormalities at doses up to 1000 mg/kg/day. This extract also did not induce DNA damage at doses ≤ 500 mg/kg/day in the bone marrow, spleen, testis, or spermatozoa and at 250 mg/kg/day in the liver or kidney. However, treatment with a high dose of E. spinosus caused significant disturbances in liver and kidney functions, oxidative stress indicators, comet tail formation, and histological architecture of the liver, kidney, and testis. In conclusion, E. spinosus extract is nontoxic, with an oral LD50 > 5000 mg/kg. The extract showed negative genotoxicity within the safety threshold of ≤ 500 mg/kg/day and positive genotoxicity at a dose of 1000 mg/kg/day.
棘棘因其治疗潜力而被广泛使用;然而,文献中没有证据证明其安全性。因此,本研究旨在通过GC/MS分析鉴定棘棘提取物的化学成分,并评价其细胞毒性和遗传毒性。雄性小鼠口服三种剂量的棘棘提取物(250、500和1000 mg/kg),持续4周。治疗结束后采集血液和组织样本。GC-MS结果显示棘棘提取物中含有73种化合物,包括糖、糖醇、脂肪酸、有机酸、氨基酸和含氮化合物。体外实验表明棘棘杆菌对人结肠癌、前列腺癌和乳腺癌细胞无细胞毒性。体内实验表明,当剂量达到1000 mg/kg/天时,棘棘提取物不会引起骨髓染色体损伤、原代精细胞损伤或精子形态异常。在≤ 500 mg/kg/天的剂量下,该提取物在骨髓、脾脏、睾丸或精子中也不会引起DNA损伤,在250 mg/kg/天的剂量下,在肝脏或肾脏中也不会引起DNA损伤。然而,用高剂量棘棘杆菌治疗会引起肝肾功能、氧化应激指标、彗星尾形成以及肝、肾和睾丸的组织学结构的显著紊乱。综上所述,棘棘提取物无毒,口服LD50 >; 5000 mg/kg。该提取物在≤ 500 mg/kg/day的安全阈值内呈阴性遗传毒性,在1000 mg/kg/day的剂量内呈阳性遗传毒性。
{"title":"Safety evaluation of ethanolic extract from aerial flowering part of spiny globe thistle (Echinops spinosus) in mice: Phytochemical screening and genotoxicity","authors":"Kawthar A. Diab ,&nbsp;Maha A. Fahmy ,&nbsp;Entessar E. Hassan ,&nbsp;Ahmed M. Nagy ,&nbsp;Ayman A. Farghaly ,&nbsp;Emad M. Hassan ,&nbsp;Enayat A. Omara","doi":"10.1016/j.mrgentox.2025.503854","DOIUrl":"10.1016/j.mrgentox.2025.503854","url":null,"abstract":"<div><div><em>Echinops spinosus</em> is widely used by the population due to its therapeutic potential; however, there is no evidence in the literature that substantiates its safety. Therefore, this study aimed to identify the chemical constituents of <em>E. spinosus</em> extract via GC/MS analysis and evaluate its cytotoxicity and genotoxicity. Male mice were orally given three doses of <em>E. spinosus</em> extract (250, 500, and 1000 mg/kg) for four weeks. Blood and tissue samples were collected after the end of treatment. GC–MS results revealed 73 compounds in the <em>E. spinosus</em> extract, including sugars, sugar alcohols, fatty acids, organic acids, amino acids, and nitrogenous compounds. <em>In vitro</em> experiments revealed that <em>E. spinosus</em> was not cytotoxic to human colon, prostate, or breast cancer cells. <em>In vivo</em> experiments showed that <em>E. spinosus</em> extract did not significantly induce chromosomal damage in the bone marrow, primary spermatocyte, or sperm morphology abnormalities at doses up to 1000 mg/kg/day. This extract also did not induce DNA damage at doses <em>≤ 500 mg/kg/day</em> in the bone marrow, spleen, testis, or spermatozoa and at 250 mg/kg/day in the liver or kidney. However, treatment with a high dose of <em>E. spinosus</em> caused significant disturbances in liver and kidney functions, oxidative stress indicators, comet tail formation, and histological architecture of the liver, kidney, and testis. In conclusion<em>, E. spinosus</em> extract is nontoxic, with an oral LD<sub>50</sub> &gt; 5000 mg/kg. The extract showed negative genotoxicity within the safety threshold of ≤ 500 mg/kg/day and positive genotoxicity at a dose of 1000 mg/kg/day.</div></div>","PeriodicalId":18799,"journal":{"name":"Mutation research. Genetic toxicology and environmental mutagenesis","volume":"902 ","pages":"Article 503854"},"PeriodicalIF":2.3,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143376923","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dose-response curve for induction of unstable chromosome aberrations by 6 MV linear accelerator photons: Analysis of intra-experimental variations 6 MV直线加速器光子诱导不稳定染色体畸变的剂量-响应曲线:实验内变异分析
IF 2.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.mrgentox.2025.503849
Volodymyr Vinnikov , Dominika Kochanova , Katarína Vigašová , Sachin Gulati , Matúš Durdík , Pavol Košík , Eva Marková , Lukáš Jakl , Lucián Zastko , Kristína Kontrišová , Igor Belyaev
Cytogenetic biodosimetry relies on dose-response curves (DRCs) for each type of radiation that can cause a radiation emergency. We have constructed a DRC based on the dicentric assay. Blood samples from four healthy volunteers were irradiated with acute 6 MV linac photons, 0.46–4.55 Gy; 0.68 and 1.37 Gy doses were used in the ‘blind’ validation study. Lymphocytes were cultured with variations in time delay in mitogenic stimulation after irradiation (2 vs. 16 h) and mitotic arrest by colchicine (3.5 vs. 16 h). Aberrations were scored in the first division metaphases, ensured by fluorescence-plus-Giemsa staining. DRCs for dicentrics and dicentrics plus centric rings were efficiently fitted using the linear-quadratic model. We show, for the first time, that neither prolonged mitotic arrest nor delayed mitogenic stimulation has any effect on DRC. However, the latter factor caused a significant increase in the yield of the second division metaphase in culture. Inter-donor differences in the DRC for aberrations were not large, but individual changes in the frequencies of second-division cells were highly variable. In the validation study, the DRC combined from all experimental series provided dose estimates that were as accurate as those, obtained using the donors’ individual or culture-type specific DRCs. The DRC coefficients in present study were slightly higher than those reported previously for linac beams and close to values for orthovoltage X-rays. Further cytogenetic studies of megavoltage radiation beams require stringent standardization of experimental conditions.
细胞遗传学生物剂量学依赖于每种可能导致辐射紧急情况的辐射的剂量-反应曲线。我们建立了一个基于双中心分析的DRC。用急性6 MV直线光子(0.46-4.55 Gy)照射4名健康志愿者的血液样本;在“盲”验证研究中使用0.68和1.37 Gy剂量。培养的淋巴细胞在辐照后有丝分裂刺激的时间延迟(2 vs. 16 h)和秋水仙碱有丝分裂停止(3.5 vs. 16 h)有所不同。在第一分裂中期,用荧光加吉姆萨染色法对畸变进行评分。采用线性二次元模型对双心环和双心环加中心环进行了有效的拟合。我们首次表明,无论是延长有丝分裂停止还是延迟有丝分裂刺激对DRC都没有任何影响。但后一个因素在培养中使二分裂中期的产量显著增加。在DRC中,供体间的畸变差异不大,但二次分裂细胞频率的个体变化是高度可变的。在验证研究中,综合所有实验系列的DRC提供的剂量估计值与使用献血者个体或培养型特异性DRC获得的剂量估计值一样准确。本研究的DRC系数略高于先前报道的直线光束,接近于正电压x射线的值。进一步的巨压辐射束细胞遗传学研究需要严格的实验条件标准化。
{"title":"Dose-response curve for induction of unstable chromosome aberrations by 6 MV linear accelerator photons: Analysis of intra-experimental variations","authors":"Volodymyr Vinnikov ,&nbsp;Dominika Kochanova ,&nbsp;Katarína Vigašová ,&nbsp;Sachin Gulati ,&nbsp;Matúš Durdík ,&nbsp;Pavol Košík ,&nbsp;Eva Marková ,&nbsp;Lukáš Jakl ,&nbsp;Lucián Zastko ,&nbsp;Kristína Kontrišová ,&nbsp;Igor Belyaev","doi":"10.1016/j.mrgentox.2025.503849","DOIUrl":"10.1016/j.mrgentox.2025.503849","url":null,"abstract":"<div><div>Cytogenetic biodosimetry relies on dose-response curves (DRCs) for each type of radiation that can cause a radiation emergency. We have constructed a DRC based on the dicentric assay. Blood samples from four healthy volunteers were irradiated with acute 6 MV linac photons, 0.46–4.55 Gy; 0.68 and 1.37 Gy doses were used in the ‘blind’ validation study. Lymphocytes were cultured with variations in time delay in mitogenic stimulation after irradiation (2 vs. 16 h) and mitotic arrest by colchicine (3.5 vs. 16 h). Aberrations were scored in the first division metaphases, ensured by fluorescence-plus-Giemsa staining. DRCs for dicentrics and dicentrics plus centric rings were efficiently fitted using the linear-quadratic model. We show, for the first time, that neither prolonged mitotic arrest nor delayed mitogenic stimulation has any effect on DRC. However, the latter factor caused a significant increase in the yield of the second division metaphase in culture. Inter-donor differences in the DRC for aberrations were not large, but individual changes in the frequencies of second-division cells were highly variable. In the validation study, the DRC combined from all experimental series provided dose estimates that were as accurate as those, obtained using the donors’ individual or culture-type specific DRCs. The DRC coefficients in present study were slightly higher than those reported previously for linac beams and close to values for orthovoltage X-rays. Further cytogenetic studies of megavoltage radiation beams require stringent standardization of experimental conditions.</div></div>","PeriodicalId":18799,"journal":{"name":"Mutation research. Genetic toxicology and environmental mutagenesis","volume":"902 ","pages":"Article 503849"},"PeriodicalIF":2.3,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143152748","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
What are the effects of whole blood storage conditions on comet assay in terms of DNA damage and repair? 在DNA损伤和修复方面,全血储存条件对彗星测定的影响是什么?
IF 2.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.mrgentox.2025.503851
Eren Ozcagli , Esma Soylemez Yesilcimen , Gulden Zehra Omurtag
The comet assay is a rapid, simple and sensitive method for the detection of DNA damage and repair at the level of individual cells, with a wide range of applications in human biomonitoring and molecular epidemiology. It is common practice to perform the comet assay on fresh samples to preserve the integrity of the DNA and to obtain reliable results, which is why most published studies have been designed using fresh blood samples. There are limitations associated with the use of fresh samples for this assay and the need for appropriate storage for some studies. The aim of this study was to determine changes in DNA damage and DNA repair kinetics during medium- and long-term storage of human whole blood (WB) samples without adding cryopreservatives. Whole blood samples were divided into small portions and tested after overnight storage at + 4 °C. Frozen samples were stored at −20 and −80 °C for 3 different time points: 30, 90 and 180 days. Frozen samples were compared with fresh samples stored at + 4 °C in terms of DNA damage and repair. For WB samples stored at −80 °C, showed an increase in purine base damage (PBD) and DNA repair alterations were determined while no increase in basal DNA damage was observed. According to the results of our study, storage of WB samples for comet assay in small portions at −20 °C for up to 90 days does not cause any additional damage and does not cause any alter DNA repair kinetics.
彗星法是一种在单个细胞水平上快速、简便、灵敏地检测DNA损伤和修复的方法,在人体生物监测和分子流行病学中有着广泛的应用。通常的做法是对新鲜样本进行彗星分析,以保持DNA的完整性并获得可靠的结果,这就是为什么大多数已发表的研究都是使用新鲜血液样本设计的。使用新鲜样品进行检测有一定的局限性,一些研究需要适当的储存。本研究的目的是确定在不添加冷冻保鲜剂的情况下,中长期保存人全血(WB)样本时DNA损伤和DNA修复动力学的变化。全血样本分成小份,在+ 4°C下保存过夜后进行检测。冷冻样品在- 20和- 80°C下保存3个不同的时间点:30,90和180天。将冷冻样品与+ 4°C保存的新鲜样品在DNA损伤和修复方面进行比较。对于储存在- 80°C的WB样品,可以确定嘌呤碱基损伤(PBD)和DNA修复改变的增加,而基础DNA损伤没有增加。根据我们的研究结果,小份WB样品在- 20°C下保存90天不会造成任何额外的损伤,也不会导致任何DNA修复动力学的改变。
{"title":"What are the effects of whole blood storage conditions on comet assay in terms of DNA damage and repair?","authors":"Eren Ozcagli ,&nbsp;Esma Soylemez Yesilcimen ,&nbsp;Gulden Zehra Omurtag","doi":"10.1016/j.mrgentox.2025.503851","DOIUrl":"10.1016/j.mrgentox.2025.503851","url":null,"abstract":"<div><div>The comet assay is a rapid, simple and sensitive method for the detection of DNA damage and repair at the level of individual cells, with a wide range of applications in human biomonitoring and molecular epidemiology. It is common practice to perform the comet assay on fresh samples to preserve the integrity of the DNA and to obtain reliable results, which is why most published studies have been designed using fresh blood samples. There are limitations associated with the use of fresh samples for this assay and the need for appropriate storage for some studies. The aim of this study was to determine changes in DNA damage and DNA repair kinetics during medium- and long-term storage of human whole blood (WB) samples without adding cryopreservatives. Whole blood samples were divided into small portions and tested after overnight storage at + 4 °C. Frozen samples were stored at −20 and −80 °C for 3 different time points: 30, 90 and 180 days. Frozen samples were compared with fresh samples stored at + 4 °C in terms of DNA damage and repair. For WB samples stored at −80 °C, showed an increase in purine base damage (PBD) and DNA repair alterations were determined while no increase in basal DNA damage was observed. According to the results of our study, storage of WB samples for comet assay in small portions at −20 °C for up to 90 days does not cause any additional damage and does not cause any alter DNA repair kinetics.</div></div>","PeriodicalId":18799,"journal":{"name":"Mutation research. Genetic toxicology and environmental mutagenesis","volume":"902 ","pages":"Article 503851"},"PeriodicalIF":2.3,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143152750","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genotoxic and cytotoxic effects of polystyrene nanoplastics on human lymphocytes: A comprehensive analysis 聚苯乙烯纳米塑料对人淋巴细胞的遗传毒性和细胞毒性:综合分析
IF 2.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.mrgentox.2025.503850
Ahmet Ali Berber , Nihan Akinci Kenanoğlu , Şefika Nur Demi̇r , Hüseyin Aksoy
A growing amount of plastic waste is finding its way into natural ecosystems as a result of the widespread usage of plastics in modern society. These wastes degrade physically and biologically over time, transforming into microplastics (MPs) and nanoplastics (NPs). MPs and NPs emissions from the terrestrial environment then mix with rivers and eventually the seas, forming garbage. The cytotoxic and genotoxic effects of 50 nm polystyrene nanoplastics (PsNP) on human lymphocytes were assessed using the in vitro mitotic index (MI), micronucleus (MN), and comet assays. Both 24 and 48-h applications were performed for MI, and it was determined that 50 nm PsNP provided a statistically significant decrease in MI compared to the control at all concentrations and application times (except 0.001 and 0.1 μg/mL at 24 h). According to the MN test results, the MN frequency increased significantly at all concentrations when compared to the negative control. In the comet test, a statistically significant increase of comet tail length was observed at 0.001, 10 and 100 μg/mL concentration with 50 nm PsNP exposure. Tail moment also showed a statistically significant increase at the lowest concentration of 0.001 μg/mL and the highest concentration of 1, 10, 100 μg/mL compared to the negative control. All test results show that PsNP has both genotoxic and cytotoxic potential.
由于塑料在现代社会的广泛使用,越来越多的塑料垃圾正在进入自然生态系统。随着时间的推移,这些废物会发生物理和生物降解,转化为微塑料(MPs)和纳米塑料(NPs)。从陆地环境中排放出来的MPs和NPs与河流混合,最终进入海洋,形成垃圾。采用体外有丝分裂指数(MI)、微核(MN)和彗星(comet)试验评估50 nm聚苯乙烯纳米塑料(PsNP)对人淋巴细胞的细胞毒性和基因毒性作用。在24和48小时的应用中,研究人员发现,与对照组相比,在所有浓度和应用时间下,50 nm PsNP均能显著降低心肌梗死(24 小时0.001和0.1 μg/mL除外)。MN检测结果显示,与阴性对照相比,在所有浓度下,MN频率均显著增加。在彗星试验中,浓度为0.001、10和100 μg/mL、暴露于50 nm的PsNP时,彗尾长度增加具有统计学意义。尾矩在最低浓度为0.001 μg/mL和最高浓度为1、10、100 μg/mL时也较阴性对照有统计学意义的增加。所有测试结果表明PsNP具有基因毒性和细胞毒性潜能。
{"title":"Genotoxic and cytotoxic effects of polystyrene nanoplastics on human lymphocytes: A comprehensive analysis","authors":"Ahmet Ali Berber ,&nbsp;Nihan Akinci Kenanoğlu ,&nbsp;Şefika Nur Demi̇r ,&nbsp;Hüseyin Aksoy","doi":"10.1016/j.mrgentox.2025.503850","DOIUrl":"10.1016/j.mrgentox.2025.503850","url":null,"abstract":"<div><div>A growing amount of plastic waste is finding its way into natural ecosystems as a result of the widespread usage of plastics in modern society. These wastes degrade physically and biologically over time, transforming into microplastics (MPs) and nanoplastics (NPs). MPs and NPs emissions from the terrestrial environment then mix with rivers and eventually the seas, forming garbage. The cytotoxic and genotoxic effects of 50 nm polystyrene nanoplastics (PsNP) on human lymphocytes were assessed using the in vitro mitotic index (MI), micronucleus (MN), and comet assays. Both 24 and 48-h applications were performed for MI, and it was determined that 50 nm PsNP provided a statistically significant decrease in MI compared to the control at all concentrations and application times (except 0.001 and 0.1 μg/mL at 24 h). According to the MN test results, the MN frequency increased significantly at all concentrations when compared to the negative control. In the comet test, a statistically significant increase of comet tail length was observed at 0.001, 10 and 100 μg/mL concentration with 50 nm PsNP exposure. Tail moment also showed a statistically significant increase at the lowest concentration of 0.001 μg/mL and the highest concentration of 1, 10, 100 μg/mL compared to the negative control. All test results show that PsNP has both genotoxic and cytotoxic potential.</div></div>","PeriodicalId":18799,"journal":{"name":"Mutation research. Genetic toxicology and environmental mutagenesis","volume":"902 ","pages":"Article 503850"},"PeriodicalIF":2.3,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143152747","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The role of luteolin in modulation of acrylamide-induced genotoxicity and apoptosis in embryonic fibroblast cells 木犀草素在丙烯酰胺诱导的胚胎成纤维细胞遗传毒性和凋亡调控中的作用
IF 2.3 4区 医学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-02-01 DOI: 10.1016/j.mrgentox.2025.503853
Burcu Keskin , Banu Orta-Yilmaz , Yasemin Aydin
Acrylamide (Acr) is generated through cooking techniques such as frying and roasting, commonly employed in food preparation. The consumption of Acr is unavoidable due to its prevalence in frequently consumed food products. Awareness of the detrimental consequences of Acr has prompted researchers to undertake experiments aimed at mitigating these effects. Flavonoids, the secondary metabolites of plants, have been researched for their antioxidant properties. Luteolin (Lut) exhibits higher antioxidant potency compared to many other flavonoids and has also shown strong DNA-protective properties in the previous research. The study involved the administration of Acr (0.5, 1, and 2 mM) and Lut (10 µM) to Balb/c 3T3 embryonic fibroblast cells for 24 h. The cytotoxic effect of Acr and Lut on 3T3 embryonic fibroblast cells was assessed using cell viability and lactate dehydrogenase assays. Furthermore, the propidium iodide/Hoechst double fluorescence staining technique was employed to illustrate the apoptotic consequences. The genotoxicity of Acr and the cytoprotective properties of Lut against this genotoxicity were evaluated using cytokinesis-blocking micronucleus analysis and the comet test. The analysis of the results revealed that exposure of embryonic fibroblast cells to Acr concentrations led to a significant reduction in cell viability, along with an elevation in lactate dehydrogenase enzyme levels, an increase in the frequency of micronuclei, and the formation of comets. Additionally, Lut has been shown to suppress both cytotoxicity and genotoxicity when used in combination with Acr. Consequently, it has been revealed that Lut has ameliorative effects on genotoxicity caused by Acr.
丙烯酰胺(Acr)是通过烹饪技术产生的,如油炸和烘烤,通常用于食品制备。由于Acr在经常消费的食品中普遍存在,因此其消费是不可避免的。对Acr有害后果的认识促使研究人员开展旨在减轻这些影响的实验。黄酮类化合物是植物的次生代谢产物,其抗氧化性能得到了广泛的研究。与其他类黄酮相比,木犀草素具有更高的抗氧化能力,并且在先前的研究中也显示出很强的dna保护作用。该研究涉及给Balb/c 3T3胚胎成纤维细胞注射Acr(0.5、1和2 mM)和Lut(10µM) 24 h。采用细胞活力和乳酸脱氢酶测定法评价Acr和Lut对3T3胚胎成纤维细胞的细胞毒作用。此外,采用碘化丙啶/Hoechst双荧光染色技术说明凋亡的后果。采用细胞分裂阻断微核分析和彗星试验对Acr的遗传毒性和Lut的细胞保护作用进行了评价。分析结果显示,胚胎成纤维细胞暴露于Acr浓度下,导致细胞活力显著降低,乳酸脱氢酶水平升高,微核频率增加,形成彗星。此外,当与Acr联合使用时,Lut已显示出抑制细胞毒性和遗传毒性。结果表明,Lut对Acr的遗传毒性具有改善作用。
{"title":"The role of luteolin in modulation of acrylamide-induced genotoxicity and apoptosis in embryonic fibroblast cells","authors":"Burcu Keskin ,&nbsp;Banu Orta-Yilmaz ,&nbsp;Yasemin Aydin","doi":"10.1016/j.mrgentox.2025.503853","DOIUrl":"10.1016/j.mrgentox.2025.503853","url":null,"abstract":"<div><div>Acrylamide (Acr) is generated through cooking techniques such as frying and roasting, commonly employed in food preparation. The consumption of Acr is unavoidable due to its prevalence in frequently consumed food products. Awareness of the detrimental consequences of Acr has prompted researchers to undertake experiments aimed at mitigating these effects. Flavonoids, the secondary metabolites of plants, have been researched for their antioxidant properties. Luteolin (Lut) exhibits higher antioxidant potency compared to many other flavonoids and has also shown strong DNA-protective properties in the previous research. The study involved the administration of Acr (0.5, 1, and 2 mM) and Lut (10 µM) to Balb/c 3T3 embryonic fibroblast cells for 24 h. The cytotoxic effect of Acr and Lut on 3T3 embryonic fibroblast cells was assessed using cell viability and lactate dehydrogenase assays. Furthermore, the propidium iodide/Hoechst double fluorescence staining technique was employed to illustrate the apoptotic consequences. The genotoxicity of Acr and the cytoprotective properties of Lut against this genotoxicity were evaluated using cytokinesis-blocking micronucleus analysis and the comet test. The analysis of the results revealed that exposure of embryonic fibroblast cells to Acr concentrations led to a significant reduction in cell viability, along with an elevation in lactate dehydrogenase enzyme levels, an increase in the frequency of micronuclei, and the formation of comets. Additionally, Lut has been shown to suppress both cytotoxicity and genotoxicity when used in combination with Acr. Consequently, it has been revealed that Lut has ameliorative effects on genotoxicity caused by Acr.</div></div>","PeriodicalId":18799,"journal":{"name":"Mutation research. Genetic toxicology and environmental mutagenesis","volume":"902 ","pages":"Article 503853"},"PeriodicalIF":2.3,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143152751","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Mutation research. Genetic toxicology and environmental mutagenesis
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1