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Mutagenicity assessment of two potential impurities in preparations of 5-amino-2,4,6 triiodoisophthalic acid, a key intermediate in the synthesis of the iodinated contrast agent iopamidol 碘化造影剂iopamidol合成中的关键中间体- 5-氨基-2,4,6三碘二苯二甲酸制备中两种潜在杂质的致突变性评价
IF 1.9 4区 医学 Q2 Environmental Science Pub Date : 2023-11-28 DOI: 10.1016/j.mrgentox.2023.503720
Silvia Rossi , Simona Bussi , Roberta Bonafè , Carola Incardona , Emanuela Vurro , Massimo Visigalli , Federica Buonsanti , Roberta Fretta

5-Aminoisophthalic acid and 5-nitroisophthalic acid (5-NIPA) are potential impurities in preparations of 5-amino-2,4,6-triiodoisophthalic acid, which is a key intermediate in the synthesis of the iodinated contrast agent iopamidol. We have studied their mutagenicity in silico (quantitative structure-activity relationships, QSAR) and by the bacterial reverse mutation assay (Ames test). First, the compounds were screened with the tools Derek Nexus™ and Leadscope®. Both compounds were flagged as potentially mutagenic (class 3 under ICH M7). However, contrary to the in silico prediction, neither chemical was mutagenic in the Ames test (plate incorporation method) with or without S9 metabolic activation.

5-氨基间苯二甲酸和5-硝基间苯二甲酸(5-NIPA)是合成碘化造影剂iopamidol的关键中间体5-氨基-2,4,6-三碘间苯二甲酸的潜在杂质。我们用定量构效关系(QSAR)和细菌反向突变试验(Ames试验)研究了它们的致突变性。首先,使用Derek Nexus™和Leadscope®工具筛选化合物。这两种化合物都被标记为潜在的致突变性(ICH M7中的3类)。然而,与计算机预测相反,在Ames试验(平板掺入法)中,无论是否有S9代谢激活,这两种化学物质都没有致突变性。
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引用次数: 0
Oxidative DNA damage: Induction by fructose, in vitro, and its enhancement by hydrogen peroxide DNA 氧化损伤:体外果糖的诱导作用和过氧化氢的增强作用
IF 1.9 4区 医学 Q2 Environmental Science Pub Date : 2023-11-26 DOI: 10.1016/j.mrgentox.2023.503719
Kaoru Midorikawa , Kokoro Kobayashi , Shinya Kato , Shosuke Kawanishi , Hatasu Kobayashi , Shinji Oikawa , Mariko Murata

Sucrose and high-fructose corn syrup comprise nearly equal amounts of glucose and fructose. With the use of high-fructose corn syrup in the food industry, consumption of fructose, which may be a tumor promoter, has increased dramatically. We examined fructose-induced oxidative DNA damage in the presence of Cu(II), with or without the addition of H2O2. With isolated DNA, fructose induced Cu(II)-mediated DNA damage, including formation of 8-oxo-7,8-dihydro-2′-deoxyguanosine (8-oxodG), to a greater extent than did glucose, and H2O2 enhanced the damage. In cultured human cells, 8-oxodG formation increased significantly following treatment with fructose and the H2O2-generating enzyme glucose oxidase. Fructose may play an important role in oxidative DNA damage, suggesting a possible mechanism for involvement of fructose in carcinogenesis.

蔗糖和高果糖玉米糖浆由几乎等量的葡萄糖和果糖组成。随着高果糖玉米糖浆在食品工业中的使用,果糖的消费量急剧增加,而果糖可能是一种肿瘤促进剂。我们研究了果糖在有 Cu(II)存在、添加或不添加 H2O2 的情况下诱导的 DNA 氧化损伤。在分离的 DNA 中,果糖诱导 Cu(II)介导的 DNA 损伤(包括 8-氧代-7,8-二氢-2′-脱氧鸟苷(8-oxodG)的形成)的程度高于葡萄糖,而 H2O2 会增强这种损伤。在培养的人体细胞中,果糖和产生 H2O2 的葡萄糖氧化酶处理后,8-oxodG 的形成显著增加。果糖可能在 DNA 氧化损伤中发挥了重要作用,这表明果糖参与致癌的可能机制。
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引用次数: 0
Assessment of the performance of the Ames MPF™ assay: A multicenter collaborative study with six coded chemicals 艾姆斯 MPF™ 检测法的性能评估:六种编码化学品的多中心合作研究
IF 1.9 4区 医学 Q2 Environmental Science Pub Date : 2023-11-23 DOI: 10.1016/j.mrgentox.2023.503718
Dimitrios Spiliotopoulos , Cécile Koelbert , Marc Audebert , Ilona Barisch , Deborah Bellet , Mathilde Constans , Andreas Czich , Francis Finot , Véronique Gervais , Laure Khoury , Christian Kirchnawy , Sachiko Kitamoto , Audrey Le Tesson , Laure Malesic , Ryoko Matsuyama , Elisa Mayrhofer , Isabelle Mouche , Birgit Preikschat , Lukas Prielinger , Bernhard Rainer , Kerstin Wäse

The Ames MPF™ is a miniaturized, microplate fluctuation format of the Ames test. It is a standardized, commercially available product which can be used to assess mutagenicity in Salmonella and E. coli strains in 384-well plates using a color change-based readout. Several peer-reviewed comparisons of the Ames MPF™ to the Ames test in Petri dishes confirmed its suitability to evaluate the mutagenic potential of a variety of test items. An international multicenter study involving seven laboratories tested six coded chemicals with this assay using five bacterial strains, as recommended by the OECD test guideline 471. The data generated by the participating laboratories was in excellent agreement (93%), and the similarity of their dose response curves, as analyzed with sophisticated statistical approaches further confirmed the suitability of the Ames MPF™ assay as an alternative to the Ames test on agar plates, but with advantages with respect to significantly reduced amount of test substance and S9 requirements, speed, hands-on time and, potentially automation.

艾姆斯 MPF™ 是艾姆斯试验的微型化微孔板波动格式。它是一种标准化的商用产品,可用于在 384 孔板中使用基于颜色变化的读数来评估沙门氏菌和大肠杆菌菌株的诱变性。经同行评议,将艾姆斯 MPF™ 与培养皿中的艾姆斯试验进行比较后证实,它适用于评估各种试验项目的诱变潜力。根据经合组织测试准则 471 的建议,一项由七个实验室参与的国际多中心研究使用五种细菌菌株对六种编码化学品进行了测试。参与研究的实验室得出的数据非常一致(93%),而且通过复杂的统计方法分析,它们的剂量反应曲线也非常相似,这进一步证实了艾姆斯 MPF™ 检测法可以替代琼脂平板艾姆斯检测法,而且在大幅减少检测物质的用量和 S9 要求、速度、操作时间以及潜在的自动化方面具有优势。
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引用次数: 0
Mutagenic effects of a commercial glyphosate-based herbicide formulation on the soil filamentous fungus Aspergillus nidulans depending on the mode of exposure 基于草甘膦的商业除草剂配方对土壤丝状真菌中性曲霉的致突变效应取决于暴露方式
IF 1.9 4区 医学 Q2 Environmental Science Pub Date : 2023-11-01 DOI: 10.1016/j.mrgentox.2023.503708
Nathalie Oestreicher , Jean-Paul Bourdineaud , Christian Vélot

Glyphosate-based herbicides (GBH) are the most used pesticides worldwide. This widespread dissemination raises the question of non-target effects on a wide range of organisms, including soil micro-organisms. Despite a large body of scientific studies reporting the harmful effects of GBHs, the health and environmental safety of glyphosate and its commercial formulations remains controversial. In particular, contradictory results have been obtained on the possible genotoxicity of these herbicides depending on the organisms or biological systems tested, the modes and durations of exposure and the sensitivity of the detection technique used. We previously showed that the well-characterized soil filamentous fungus Aspergillus nidulans was highly affected by a commercial GBH formulation containing 450 g/L of glyphosate (R450), even when used at doses far below the agricultural application rate. In the present study, we analysed the possible mutagenicity of R450 in A. nidulans by screening for specific mutants after different modes of exposure to the herbicide. R450 was found to exert a mutagenic effect only after repeated exposure during growth on agar-medium, and depending on the metabolic status of the tested strain. The nature of some mutants and their ability to tolerate the herbicide better than did the wild-type strain suggested that their emergence may reflect an adaptive response of the fungus to offset the herbicide effects. The use of a non-selective molecular approach, the quantitative random amplified polymorphic DNA (RAPD-qPCR), showed that R450 could also exert a mutagenic effect after a one-shot overnight exposure during growth in liquid culture. However, this effect was subtle and no longer detectable when the fungus had previously been repeatedly exposed to the herbicide on a solid medium. This indicated an elevation of the sensitivity threshold of A. nidulans to the R450 mutagenicity, and thus confirmed the adaptive capacity of the fungus to the herbicide.

草甘膦除草剂(GBH)是世界上使用最多的农药。这种广泛传播提出了对包括土壤微生物在内的广泛生物产生非目标效应的问题。尽管大量科学研究报告了GBHs的有害影响,但草甘膦及其商业配方的健康和环境安全性仍存在争议。特别是,根据所测试的生物体或生物系统、暴露的方式和持续时间以及所使用的检测技术的灵敏度,关于这些除草剂可能的遗传毒性已获得相互矛盾的结果。我们之前的研究表明,特性良好的土壤丝状真菌中性曲霉(Aspergillus nidulans)受到含有450 g/L草甘膦(R450)的商业GBH配方的高度影响,即使其使用剂量远低于农业施用量。在本研究中,我们通过筛选不同暴露方式下的特异性突变体,分析了R450在白杨草中可能的致突变性。R450仅在琼脂培养基上反复暴露后才能发挥诱变作用,这取决于被试菌株的代谢状态。一些突变体的性质及其耐受除草剂的能力比野生型菌株更好,这表明它们的出现可能反映了真菌的适应性反应,以抵消除草剂的影响。使用非选择性分子方法,定量随机扩增多态性DNA (RAPD-qPCR),表明R450在液体培养过程中经过一次过夜暴露后也能发挥诱变作用。然而,这种影响是微妙的,当真菌之前在固体介质上反复暴露于除草剂时,这种影响不再被检测到。结果表明,该真菌对R450诱变剂的敏感性阈值有所提高,从而证实了该真菌对该除草剂的适应能力。
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引用次数: 0
Saxagliptin, a selective dipeptidyl peptidase-4 inhibitor, alleviates somatic cell aneugenicity and clastogenicity in diabetic mice 沙格列汀是一种选择性二肽基肽酶-4抑制剂,可减轻糖尿病小鼠体细胞的非整倍性和断裂原性
IF 1.9 4区 医学 Q2 Environmental Science Pub Date : 2023-10-18 DOI: 10.1016/j.mrgentox.2023.503707
Sabry M. Attia, Sheikh F. Ahmad, Ahmed Nadeem, Mohamed S.M. Attia, Mushtaq A. Ansari, Abdelkader E. Ashour, Norah A. Albekairi, Mohammed A. Al-Hamamah, Ali A. Alshamrani, Saleh A. Bakheet

Diabetes-related complications are becoming increasingly common as the global prevalence of diabetes increases. Diabetes is also linked to a high risk of developing cancer. This raises the question of whether cancer vulnerability is caused by diabetes itself or the use of antidiabetic drugs. Chromosomal instability, a source of genetic modification involving either an altered chromosomal number or structure, is a hallmark of cancer. Saxagliptin has been approved by the FDA for diabetes treatment. However, the detailed in vivo effects of prolonged saxagliptin treatment on chromosomal instability have not yet been reported. In this study, streptozotocin was used to induce diabetes in mice, and both diabetic and non-diabetic mice received saxagliptin for five weeks. Fluorescence in situ hybridization was conducted in combination with a bone marrow micronucleus test for measuring chromosomal instability. Our results indicated that saxagliptin is neither mutagenic nor cytotoxic, under the given treatment regimen. Diabetic mice had a much higher incidence of micronuclei formation, and a centromeric DNA probe was present inside the majority of the induced micronuclei, indicating that most of these were caused by chromosome nondisjunction. Conversely, diabetic mice treated with saxagliptin exhibited a significant decrease in micronuclei induction, which were centromeric-positive and centromeric-negative. Diabetes also causes significant biochemical changes indicative of oxidative stress, such as increased lipid peroxidation and decreased reduced/oxidized glutathione ratio, which was reversed by saxagliptin administration. Overall, saxagliptin, the non-mutagenic antidiabetic drug, maintains chromosomal integrity in diabetes and reduces micronuclei formation by restoring redox imbalance, further indicating its usefulness in diabetic patients.

随着全球糖尿病患病率的上升,糖尿病相关并发症越来越普遍。糖尿病也与发展癌症的高风险有关。这就提出了一个问题,即癌症的脆弱性是由糖尿病本身还是抗糖尿病药物的使用引起的。染色体不稳定性是遗传修饰的来源,涉及染色体数量或结构的改变,是癌症的标志。沙格列汀已被美国食品药品监督管理局批准用于糖尿病治疗。然而,长期沙格列汀治疗对染色体不稳定性的详细体内影响尚未报道。在这项研究中,链脲佐菌素用于诱导小鼠糖尿病,糖尿病和非糖尿病小鼠均接受沙格列汀治疗五周。荧光原位杂交结合骨髓微核试验进行,以测量染色体不稳定性。我们的结果表明,在给定的治疗方案下,沙格列汀既没有致突变性,也没有细胞毒性。糖尿病小鼠的微核形成率要高得多,并且在大多数诱导的微核内都存在着丝粒DNA探针,这表明大多数微核是由染色体不连接引起的。相反,用沙格列汀治疗的糖尿病小鼠表现出微核诱导的显著降低,微核诱导为着丝粒阳性和着丝粒阴性。糖尿病还会引起指示氧化应激的显著生化变化,如脂质过氧化增加和还原/氧化型谷胱甘肽比率降低,沙格列汀给药可逆转这种变化。总的来说,沙格列汀,一种非致突变的抗糖尿病药物,在糖尿病中保持染色体完整性,并通过恢复氧化还原失衡来减少微核的形成,这进一步表明它对糖尿病患者有用。
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引用次数: 0
Could alder buckthorn (Frangula alnus Mill) be a source of chemotherapeutics effective against hepato- and colorectal carcinoma? An in vitro study alder buckthorn(Frangula alnus Mill)是一种有效治疗肝癌和结直肠癌的化疗药物吗?体外研究
IF 1.9 4区 医学 Q2 Environmental Science Pub Date : 2023-10-14 DOI: 10.1016/j.mrgentox.2023.503706
Stefana Vuletić , Marina Bekić , Sergej Tomić , Biljana Nikolić , Stefana Cvetković , Tea Ganić , Dragana Mitić-Ćulafić

Among numerous types of cancer, hepatocellular and colorectal carcinoma are important causes of mortality. Given the nature of these cancer types and their resistance, it is of great importance to find new chemotherapeutics and therapy targets, so plant products seem to be an excellent choice in such search. The main goal of this study was to investigate anticancer activity of Frangula alnus ethyl-acetate extract (FA) and its dominant constituent emodin (E) on hepatocellular and colorectal carcinoma cell lines, HepG2 and HCT116, as well as on normal MRC-5 fibroblasts. Cytotoxicity was investigated in MTT test and both FA and E showed strong reduction of cell viability in cancer cells. Flow cytometer analysis demonstrated that FA and E led to G1 phase arrest and slight accumulation of cells in the G2/M phase; additionally, annexinV-FITC/7AAD dying showed that FA and E decreased cell viability and triggered apoptosis in all cell lines. FA and E evidenced strong genotoxic potential in comet assay performed on all cell lines, while tests measuring antioxidative potential (DPPH and TBA) demonstrated strong effect of FA. It could be concluded that both FA and E have significant anticancer activity against hepatocellular and colorectal carcinoma cell lines HepG2 and HCT116, but notable selectivity was not observed.

在众多类型的癌症中,肝细胞癌和结直肠癌是导致死亡的重要原因。鉴于这些癌症类型的性质及其耐药性,寻找新的化疗药物和治疗靶点非常重要,因此植物产品似乎是此类研究的绝佳选择。本研究的主要目的是研究番石榴乙酸乙酯提取物(FA)及其主要成分大黄素(E)对肝细胞和结直肠癌细胞系HepG2和HCT116以及正常MRC-5成纤维细胞的抗癌活性。MTT法检测细胞毒性,FA和E均显著降低癌症细胞的细胞活力。流式细胞仪分析表明,FA和E导致G1期阻滞,细胞在G2/M期轻微积聚;此外,annexinV FITC/7AAD染色显示FA和E降低了所有细胞系的细胞活力并引发细胞凋亡。在对所有细胞系进行的彗星试验中,FA和E表现出强大的遗传毒性潜力,而抗氧化潜力(DPPH和TBA)的测试显示FA具有强大的作用。可以得出结论,FA和E对肝细胞和结直肠癌细胞系HepG2和HCT116都具有显著的抗癌活性,但没有观察到显著的选择性。
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引用次数: 1
Nanoplastics from ground polyethylene terephthalate food containers: Genotoxicity in human lung epithelial A549 cells 研磨聚对苯二甲酸乙二醇酯食品容器中的纳米塑料:对人肺上皮A549细胞的遗传毒性
IF 1.9 4区 医学 Q2 Environmental Science Pub Date : 2023-10-10 DOI: 10.1016/j.mrgentox.2023.503705
Mohammad Alzaben , Regina Burve , Katrin Loeschner , Peter Møller , Martin Roursgaard

The ubiquitous pollution of plastic particles in most environmental matrices leads to concern about any potential adverse effects on human health. Most studies on the toxicological effect of nanoplastics has focused on standard particles of polystyrene. In reality humans are exposed to a large variety of different types and sizes of plastic material via oral intake and inhalation. In this study, we investigated the effect of polyethylene terephthalate (PET) nanoplastic particles from ground food containers from a supermarket. The aim was to investigate a possible link between exposure to PET nanoplastics and genotoxic response in a cell model of the human airway epithelial (A549) cells. Further, we investigated the combined effect of PET and chemicals known to alter the cellular redox state, as a model of partially compromised antioxidant defense system. DNA damage was assessed by the alkaline comet assay. The ground PET nanoplastics have a mean hydrodynamic diameter of 136 nm in water. The results showed that PET exposure led to increased reactive oxygen species production (approximately 30 % increase compared to unexposed cells). In addition, exposure to PET nanoplastic increased the level of DNA strand breaks (net increase = 0.10 lesions/106 base pair, 95 % confidence interval: 0.01, 0.18 lesions/106 base pair). Pre- or post-exposure to hydrogen peroxide or buthionine sulfoximine did not lead to a higher level of DNA damage. Overall, the study shows that exposure to PET nanoplastics increases both intracellular reactive oxygen production and DNA damage in A549 cells.

大多数环境基质中普遍存在的塑料颗粒污染导致人们担心对人类健康的任何潜在不利影响。大多数关于纳米塑料毒理学效应的研究都集中在聚苯乙烯的标准颗粒上。事实上,人类通过口服和吸入接触到各种不同类型和大小的塑料材料。在这项研究中,我们调查了来自超市研磨食品容器的聚对苯二甲酸乙二醇酯(PET)纳米塑料颗粒的影响。目的是在人类气道上皮(A549)细胞的细胞模型中研究暴露于PET纳米塑料和基因毒性反应之间的可能联系。此外,我们研究了PET和已知改变细胞氧化还原状态的化学物质的联合作用,作为部分受损的抗氧化防御系统的模型。DNA损伤通过碱性彗星测定法进行评估。研磨的PET纳米塑料在水中具有136nm的平均流体动力学直径。结果表明,PET暴露导致活性氧产生增加(与未暴露的细胞相比增加了约30%)。此外,暴露于PET纳米塑料增加了DNA链断裂水平(净增加=0.10个病变/106个碱基对,95%置信区间:0.010.18个病变/108个碱基对)。暴露于过氧化氢或丁硫醚磺酰亚胺前或后不会导致更高水平的DNA损伤。总体而言,研究表明,暴露于PET纳米塑料会增加A549细胞内活性氧的产生和DNA损伤。
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引用次数: 0
Hazard assessment of antineoplastic drugs and metabolites using cytotoxicity and genotoxicity assays 使用细胞毒性和遗传毒性测定法对抗肿瘤药物和代谢产物进行危险性评估
IF 1.9 4区 医学 Q2 Environmental Science Pub Date : 2023-10-05 DOI: 10.1016/j.mrgentox.2023.503704
Mariana de Oliveira Klein , Luiza Flavia Veiga Francisco , Izabela Natália Faria Gomes , Sergio V. Serrano , Rui M. Reis , Henrique C.S. Silveira

Antineoplastic drugs are among the most toxic pharmaceuticals. Their release into the aquatic ecosystems has been reported, giving rise to concerns about the adverse effects, including cytotoxicity and genotoxicity, that they may have on exposed organisms. In this study, we analyzed the cytotoxicity and genotoxicity of 5-fluorouracil (5-FU) and its metabolite alpha-fluoro-beta-alanine (3-NH2-F); gemcitabine (GEM) and its metabolite 2′-deoxy-2′,2′-difluorouridine (2-DOH-DiF); as well as cyclophosphamide (CP) on the HepG2 cell line. Drug concentrations were based on those previously observed in the effluent of a major cancer hospital in Brazil. The study found that GEM, 2-DOH-DiF and 5-FU resulted in reduced cell viability. No reduction in cell viability was observed for CP and 3-NH2-F. Genotoxic assessment revealed damage in the form of nucleoplasmic bridges for CP and 3-NH2-F. The tested concentrations of all compounds resulted in significantly increased MNi and NBUDs. The results showed that these compounds induced cytotoxic and genotoxic effects in HepG2 cells at concentrations found in the environment. To the best of our knowledge, this study is the first to report on the cytogenotoxic impacts of the metabolites 3-NH2-F and 2-DOH-DiF in HepG2 cells. These findings may help in the development of public policies that could minimize potential environmental contamination.

抗肿瘤药物是毒性最大的药物之一。据报道,它们被释放到水生生态系统中,这引发了人们对它们可能对暴露的生物体产生的不良影响的担忧,包括细胞毒性和遗传毒性。在本研究中,我们分析了5-氟尿嘧啶(5-FU)及其代谢产物α-氟-β-丙氨酸(3-NH2-F)的细胞毒性和遗传毒性;吉西他滨(GEM)及其代谢产物2′-脱氧-2′,2′-二氟尿苷(2-DOH-DiF);以及环磷酰胺(CP)对HepG2细胞系的作用。药物浓度是基于先前在巴西一家大型癌症医院流出物中观察到的药物浓度。研究发现,GEM、2-DOH-DiF和5-FU导致细胞活力降低。未观察到CP和3-NH2-F的细胞活力降低。基因毒性评估显示CP和3-NH2-F以核质桥的形式受损。所有化合物的测试浓度导致MNi和NBUD显著增加。结果表明,在环境中发现的浓度下,这些化合物在HepG2细胞中诱导细胞毒性和基因毒性作用。据我们所知,本研究首次报道了代谢产物3-NH2-F和2-DOH-DiF对HepG2细胞的细胞遗传学毒性影响。这些发现可能有助于制定公共政策,最大限度地减少潜在的环境污染。
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引用次数: 0
Comparison of the transgenic rodent mutation assay, error corrected next generation duplex sequencing, and the alkaline comet assay to detect dose-related mutations following exposure to N-nitrosodiethylamine 转基因啮齿动物突变试验、纠错的下一代双链测序和碱性彗星试验的比较,以检测暴露于N-亚硝基二乙胺后的剂量相关突变。
IF 1.9 4区 医学 Q2 Environmental Science Pub Date : 2023-10-01 DOI: 10.1016/j.mrgentox.2023.503685
Joel P. Bercu , Shaofei Zhang , Zhanna Sobol , Patricia A. Escobar , Phu Van , Maik Schuler

N-Nitrosodiethylamine (NDEA), a well-studied N-nitrosamine, was tested in rats to compare the dose-response relationship of three genotoxicity endpoints. Mutant / mutation frequencies were determined using the transgenic rodent (TGR) gene mutation assay and error corrected next generation sequencing (ecNGS) (i.e., duplex sequencing (DS)), and genetic damage was detected by the alkaline comet assay. Big Blue® (cII Locus) animals (n = 6 per dose group) were administered doses of 0.001, 0.01, 0.1, 1, 3 mg/kg/day NDEA by oral gavage. Samples were collected for cII mutation and DS analyses following 28-days of exposure and 3 days recovery. In a separate study, male Sprague-Dawley (SD) rats (n = 6 per dose group) were administered the same doses by oral gavage for two consecutive days and then samples collected for the alkaline comet assay. A dose-related increase in mutant / mutation frequencies of the liver but not duodenum was observed using the TGR assay and DS with DS resulting in a slightly more sensitive response, with a lower benchmark dose (BMD). In addition, a dose-related increase in percent tail DNA was observed in the liver using the alkaline comet assay. Therefore, DS and comet assays showed good utility for hazard identification and dose-response analysis of a representative N-nitrosamine comparable to the TGR gene mutation assay.

N-亚硝基二乙胺(NDEA)是一种研究广泛的N-亚硝基胺,在大鼠身上进行了测试,以比较三个遗传毒性终点的剂量-反应关系。使用转基因啮齿动物(TGR)基因突变分析和纠错下一代测序(ecNGS)(即双链测序(DS))测定突变/突变频率,并通过碱性彗星分析检测遗传损伤。Big Blue®(cII Locus)动物(每个剂量组n=6)通过灌胃给予0.001、0.01、0.1、1、3 mg/kg/天的NDEA剂量。在暴露28天和恢复3天后收集样本进行cII突变和DS分析。在另一项研究中,雄性Sprague-Dawley(SD)大鼠(每个剂量组n=6)通过连续两天的灌胃给药相同剂量,然后收集样本用于碱性彗星测定。使用TGR测定和DS和DS观察到肝脏而不是十二指肠的突变/突变频率的剂量相关增加,导致反应稍微更敏感,具有较低的基准剂量(BMD)。此外,使用碱性彗星测定法在肝脏中观察到尾部DNA百分比的剂量相关增加。因此,DS和彗星试验在危险性鉴定和代表性N-亚硝胺的剂量反应分析方面显示出良好的实用性,与TGR基因突变试验相当。
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引用次数: 0
DNA integrity under alkaline conditions: An investigation of factors affecting the comet assay 碱性条件下的DNA完整性:彗星测定影响因素的研究。
IF 1.9 4区 医学 Q2 Environmental Science Pub Date : 2023-10-01 DOI: 10.1016/j.mrgentox.2023.503680
Erik Bivehed , Björn Hellman , Yuting Fan , Jakob Haglöf , Sonja Buratovic

The effect of pH on DNA integrity was assessed using a three-step approach. The comet assay was used on a whole genome level, with three different protocols: neutral (no alkaline unwinding), flash (pH 12.5 with 2.5 min unwinding), and the conventional alkaline protocol (pH>13 with 40 min unwinding). Real-time quantitative PCR (RT-qPCR) was then used to study the isolated DNA, revealing that gene amplification decreased with increasing pH, indicating DNA degradation. Specially designed molecular beacons were used to examine DNA at the molecular level, with or without alkali-labile site (ALS) insertions. At pH 12.5, fluorescence in the hairpins with ALS started to increase after 30 min, while at pH> 13, this increase was already observed after 5 min, indicating a significant increase in DNA strand breaks. Liquid chromatography analysis was also used, demonstrating that the hairpins remained intact up to pH 10, even after 1 h exposure, whereas, at pH 12.5, partial conversion into strand breaks occurred after 30 min. At pH> 13, the hairpins were almost completely degraded after 30 min. The flash protocol effectively detects DNA single- and double-strand breaks and identified these damages after 2.5 min of alkaline treatment at pH 12.5. When the hairpins were exposed to pH 12.5 for 60 min, ALS were converted to strand breaks, demonstrating the sensitivity of this approach to detect changes in DNA structure. These findings indicate that pH poses a substantial risk to DNA integrity, leading to significantly higher background levels of DNA damage compared to conditions closer to neutrality. Our study demonstrates the importance of understanding the influence of pH on DNA stability and provides insights into risks associated with alkaline environments, especially at pH> 13.

pH对DNA完整性的影响采用三步法进行评估。彗星试验在全基因组水平上使用,有三种不同的方案:中性(无碱性解链)、闪光(pH 12.5,解链2.5分钟)和常规碱性方案(pH>13,解链40分钟)。然后使用实时定量PCR(RT-qPCR)研究分离的DNA,发现基因扩增随着pH的增加而减少,表明DNA降解。使用专门设计的分子信标在分子水平上检查DNA,无论是否插入碱不稳定位点(ALS)。在pH 12.5时,ALS发夹中的荧光在30分钟后开始增加,而在pH>13时,在5分钟后已经观察到这种增加,表明DNA链断裂显著增加。还使用了液相色谱分析,表明发夹即使在暴露1小时后,也在pH 10下保持完整,而在pH 12.5下,30分钟后发生部分转化为链断裂。在pH>13时,发夹在30min后几乎完全降解。flash方案有效地检测DNA单链和双链断裂,并在pH 12.5的碱性处理2.5分钟后确定这些损伤。当发夹暴露于pH 12.5下60分钟时,ALS转化为链断裂,证明了这种方法对检测DNA结构变化的敏感性。这些发现表明,pH对DNA完整性构成了重大风险,与接近中性的条件相比,导致DNA损伤的背景水平显著更高。我们的研究证明了了解pH对DNA稳定性影响的重要性,并深入了解了与碱性环境相关的风险,尤其是在pH>13时。
{"title":"DNA integrity under alkaline conditions: An investigation of factors affecting the comet assay","authors":"Erik Bivehed ,&nbsp;Björn Hellman ,&nbsp;Yuting Fan ,&nbsp;Jakob Haglöf ,&nbsp;Sonja Buratovic","doi":"10.1016/j.mrgentox.2023.503680","DOIUrl":"10.1016/j.mrgentox.2023.503680","url":null,"abstract":"<div><p>The effect of pH on DNA integrity was assessed using a three-step approach. The comet assay was used on a whole genome level, with three different protocols: neutral (no alkaline unwinding), flash (pH 12.5 with 2.5 min unwinding), and the conventional alkaline protocol (pH&gt;13 with 40 min unwinding). Real-time quantitative PCR (RT-qPCR) was then used to study the isolated DNA, revealing that gene amplification decreased with increasing pH, indicating DNA degradation. Specially designed molecular beacons were used to examine DNA at the molecular level, with or without alkali-labile site (ALS) insertions. At pH 12.5, fluorescence in the hairpins with ALS started to increase after 30 min, while at pH&gt; 13, this increase was already observed after 5 min, indicating a significant increase in DNA strand breaks. Liquid chromatography analysis was also used, demonstrating that the hairpins remained intact up to pH 10, even after 1 h exposure, whereas, at pH 12.5, partial conversion into strand breaks occurred after 30 min. At pH&gt; 13, the hairpins were almost completely degraded after 30 min. The flash protocol effectively detects DNA single- and double-strand breaks and identified these damages after 2.5 min of alkaline treatment at pH 12.5. When the hairpins were exposed to pH 12.5 for 60 min, ALS were converted to strand breaks, demonstrating the sensitivity of this approach to detect changes in DNA structure. These findings indicate that pH poses a substantial risk to DNA integrity, leading to significantly higher background levels of DNA damage compared to conditions closer to neutrality. Our study demonstrates the importance of understanding the influence of pH on DNA stability and provides insights into risks associated with alkaline environments, especially at pH&gt; 13.</p></div>","PeriodicalId":18799,"journal":{"name":"Mutation research. Genetic toxicology and environmental mutagenesis","volume":null,"pages":null},"PeriodicalIF":1.9,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41136077","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Mutation research. Genetic toxicology and environmental mutagenesis
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