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Expression of low molecular weight protein tyrosine phosphatase in gastric cancer and its association with clinical outcomes and oncogenic hallmarks. 低分子蛋白酪氨酸磷酸酶在胃癌中的表达及其与临床结果和致癌标志的关系
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-15 DOI: 10.1186/s10020-025-01418-9
Luochengling Xiang, Ying Zhou, Shanshan Li, Ron Smits, Jun Yu, Maikel P Peppelenbosch, Gwenny M Fuhler

Background: Low molecular weight protein tyrosine phosphatase (LMWPTP), encoded by the ACP1 gene, has been implicated in tumor progression across multiple malignancies. While its oncogenic functions have been reported in colorectal cancer (CRC), its role in gastric cancer (GC) remains poorly defined. This study investigated the expression patterns, functional relevance, and prognostic impact of LMWPTP in GC, with comparative analyses in CRC.

Methods: Gene expression, immune infiltration, and survival analyses were performed using data from The Cancer Genome Altas (TCGA). LMWPTP protein expression was evaluated in a gastric cancer tissue microarray. Functional assays were conducted in GC and CRC cell lines with CRISPR-Cas9-mediated LMWPTP knockout.

Results: ACP1 mRNA expression was significantly upregulated in both GC and CRC compared with adjacent normal tissues. In GC, high LMWPTP expression was associated with poor differentiation in intestinal-type tumors and reduced survival in diffuse-type cases. ACP1 overexpression correlated with an elevated tumor mutation burden but a decreased cytotoxic lymphocyte infiltration signature in GC, indicating a potential relationship between ACP1 expression, tumor mutational load, and tumor immune microenvironment. Functional assays in vitro showed that LMWPTP knockout reduced migration in both GC and CRC cells, whereas a decrease in invasion was observed only in CRC cells. These findings indicate context-dependent contributions of LMWPTP to gastrointestinal tumor biology.

Conclusion: LMWPTP is consistently upregulated in gastric and colorectal cancers and exhibits tumor-type-specific functional and immune associated features. These findings highlight its distinct oncogenic role and potential as a biomarker and therapeutic target in GC.

背景:由ACP1基因编码的低分子量蛋白酪氨酸磷酸酶(LMWPTP)与多种恶性肿瘤的进展有关。虽然其在结直肠癌(CRC)中的致癌功能已被报道,但其在胃癌(GC)中的作用仍不明确。本研究探讨了LMWPTP在GC中的表达模式、功能相关性和预后影响,并对CRC进行了比较分析。方法:利用癌症基因组图谱(TCGA)的数据进行基因表达、免疫浸润和生存分析。用胃癌组织芯片检测LMWPTP蛋白的表达。通过crispr - cas9介导的LMWPTP敲除,对GC和CRC细胞系进行了功能检测。结果:与癌旁正常组织相比,胃癌和结直肠癌中ACP1 mRNA的表达均显著上调。在GC中,LMWPTP高表达与肠型肿瘤分化差和弥漫性肿瘤生存率降低相关。在胃癌中,ACP1过表达与肿瘤突变负荷升高相关,但与细胞毒性淋巴细胞浸润特征降低相关,表明ACP1表达、肿瘤突变负荷和肿瘤免疫微环境之间存在潜在关系。体外功能分析显示,敲除LMWPTP可减少GC和CRC细胞的迁移,而仅在CRC细胞中观察到侵袭减少。这些发现表明LMWPTP在胃肠道肿瘤生物学中的作用依赖于环境。结论:LMWPTP在胃癌和结直肠癌中持续上调,并表现出肿瘤类型特异性功能和免疫相关特征。这些发现突出了其独特的致癌作用和作为GC的生物标志物和治疗靶点的潜力。
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引用次数: 0
Hepatic loss of AATF attenuates MASH by suppressing AKT-mTORC1 signaling and reprogramming lipid metabolism. 肝脏中AATF的缺失通过抑制AKT-mTORC1信号和重编程脂质代谢来减弱MASH。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-13 DOI: 10.1186/s10020-025-01417-w
Akshatha N Srinivas, Diwakar Suresh, Prajna Anirvan, Manju Moorthy, Gopalkrishna Ramaswamy, Suma M Nataraj, Prasanna Kumar Santhekadur, Deepak Suvarna, Shivaram P Singh, Divya P Kumar

Background & aims: Metabolic dysfunction-associated steatohepatitis (MASH) is a multifactorial disease driven by complex molecular mechanisms. Identifying key regulators is critical for developing targeted therapies. Here, we demonstrate the impact of the loss of the apoptosis-antagonizing transcription factor (AATF) on hepatic lipid metabolism and MASH progression.

Methods: A preclinical mouse model recapitulating human MASH was established by feeding C57Bl/6 mice either a chow diet (CD) or a western diet with sugar water (WD). Hepatic AATF silencing was achieved by tail vein injection of siAATF delivered by adeno-associated virus 8 (AAV8) using a liver-specific thyroxine-binding globulin (TBG) promoter. In addition to histological, biochemical, and molecular biology evaluations, mechanistic insights were obtained through whole transcriptomic and untargeted metabolomic analyses.

Results: AAV8-mediated specific knockdown of AATF in hepatocytes significantly reduced body weight, liver weight, and insulin resistance in mice fed a western diet (WD). However, no such effects were observed in mice fed a chow diet (CD). Further analyses showed reduced liver injury, steatosis, and steatohepatitis in WDsiAATF mice. Transcriptomic analysis demonstrated that AATF loss alleviated cellular stress, inflammation, and fibrosis in WD-fed mice. Moreover, AATF silencing altered lipid metabolism, notably by decreasing hepatic lipogenesis in WD mice. Interestingly, untargeted metabolomics revealed increased glycerophospholipid biosynthesis and fatty acid β-oxidation in WDsiAATF mice.

Conclusion: Our findings reveal a previously unrecognized role of AATF as a central regulator of hepatic lipid metabolism in MASH, acting through the AKT-mTORC1 signaling pathway, and establish its inhibition as a promising therapeutic strategy for the treatment of metabolic liver disease.

背景与目的:代谢功能障碍相关脂肪性肝炎(MASH)是一种由复杂分子机制驱动的多因素疾病。确定关键的调节因子对于开发靶向治疗至关重要。在这里,我们证明了凋亡拮抗转录因子(AATF)的丧失对肝脂质代谢和MASH进展的影响。方法:通过给C57Bl/6小鼠喂食鼠粮(CD)和西粮加糖水(WD),建立重现人类MASH的临床前小鼠模型。通过使用肝脏特异性甲状腺素结合球蛋白(TBG)启动子的腺相关病毒8 (AAV8)传递的siAATF,通过尾静脉注射实现肝脏AATF沉默。除了组织学、生化和分子生物学评估外,还通过全转录组学和非靶向代谢组学分析获得了机制见解。结果:aav8介导的肝细胞特异性敲低AATF可显著降低西方饮食小鼠的体重、肝脏重量和胰岛素抵抗。然而,在喂食鼠粮(CD)的小鼠中没有观察到这种影响。进一步的分析显示,WDsiAATF小鼠的肝损伤、脂肪变性和脂肪性肝炎减少。转录组学分析表明,AATF缺失减轻了wd喂养小鼠的细胞应激、炎症和纤维化。此外,AATF沉默改变了脂质代谢,特别是通过减少WD小鼠的肝脏脂肪生成。有趣的是,非靶向代谢组学显示WDsiAATF小鼠甘油磷脂生物合成和脂肪酸β氧化增加。结论:我们的研究结果揭示了AATF在MASH中作为肝脂质代谢的中心调节剂的作用,通过AKT-mTORC1信号通路起作用,并将其抑制作为治疗代谢性肝病的一种有希望的治疗策略。
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引用次数: 0
Structural variations in evolutionary novel genomic regions: new insights into neurodevelopmental disorders by long-read DNA Sequencing. 进化新基因组区域的结构变异:通过长读DNA测序对神经发育障碍的新见解。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-09 DOI: 10.1186/s10020-025-01415-y
Martina Rincic, Janja Kopic, Valentina Klein, Zeljka Krsnik, Thomas Liehr, Sebastian Giesselmann, Ingo Kurth, Florian Kraft
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引用次数: 0
IL17F+ naïve and IFNγ+ memory CD8 T cells drive hepatic dysfunction in the cecal ligation and puncture model of sepsis. IL17F+ naïve和IFNγ+记忆CD8 T细胞驱动败血症盲肠结扎和穿刺模型肝功能障碍。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-08 DOI: 10.1186/s10020-025-01411-2
Matthew D Taylor, Omar Geier, Alexandria Z Byskosh, Ekaterina Murzin, Ana Nedeljkovic-Kurepa, Grace M Fisler, Mabel N Abraham, Mariana R Brewer, James A Lederer, Clifford S Deutschman
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引用次数: 0
CSF metabolomic signature during therapy for childhood acute lymphoblastic leukemia predicts subsequent working memory impairment. 儿童急性淋巴细胞白血病治疗期间脑脊液代谢组学特征预测随后的工作记忆障碍。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-30 DOI: 10.1186/s10020-025-01414-z
Jeremy Willekens, Sameera Ramjan, Stephen A Sands, Yongkyu Park, Nirajan K C, Melissa A Burns, Jennifer J G Welch, Justine Kahn, Kara M Kelly, Thai-Hoa Tran, Bruno Michon, Lisa Gennarini, Andrew Place, Lewis B Silverman, Peter D Cole
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引用次数: 0
Bulk and single-cell transcriptome analysis reveal shared key genes and patterns of immune dysregulation in systemic lupus erythematosus and sepsis. 大量和单细胞转录组分析揭示了系统性红斑狼疮和脓毒症免疫失调的共同关键基因和模式。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-30 DOI: 10.1186/s10020-025-01350-y
Xuehuan Wen, Songjie Bai, Kangwei Sun, Kai Zhang, Ruomeng Hu, Shumin Li, Jie Yang, Lanxin Cao, Zhijian Cai, Gensheng Zhang
{"title":"Bulk and single-cell transcriptome analysis reveal shared key genes and patterns of immune dysregulation in systemic lupus erythematosus and sepsis.","authors":"Xuehuan Wen, Songjie Bai, Kangwei Sun, Kai Zhang, Ruomeng Hu, Shumin Li, Jie Yang, Lanxin Cao, Zhijian Cai, Gensheng Zhang","doi":"10.1186/s10020-025-01350-y","DOIUrl":"https://doi.org/10.1186/s10020-025-01350-y","url":null,"abstract":"","PeriodicalId":18813,"journal":{"name":"Molecular Medicine","volume":" ","pages":""},"PeriodicalIF":6.4,"publicationDate":"2025-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145857050","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sex chromosome aneuploidy impacts on human gene expression and regulation: a systematic review. 性染色体非整倍体对人类基因表达和调控的影响:系统综述。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-30 DOI: 10.1186/s10020-025-01404-1
Marcela Legue, Melanie Staszewski, Maya Mastronardo, Gisela Butera, Aleksandra Dakic, Armin Raznahan
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引用次数: 0
Harnessing m6A-regulated cholesterol biosynthesis helps impede tumor burden and stemness in high-garde serous ovarian carcinoma mesenchymal phenotype. 利用m6a调节的胆固醇生物合成有助于抑制高级别浆液性卵巢癌间充质表型的肿瘤负荷和干性。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-29 DOI: 10.1186/s10020-025-01413-0
Aravindan Narayanan, Kiran Dhenge, Sharmila A Bapat

Post-transcriptional RNA modifications have emerged as critical regulators of stemness, cellular plasticity, adaptation to stress and transformation. Amongst these the N6-methyladenosine (m6A) modification orchestrates a wide range of physiological processes; yet its contribution to metabolic regulation remains poorly addressed. In the present study, differential proteomics revealed enrichment of core components of the m6A machinery, viz. WTAP (writer) and IGF2BP3 (reader) in stem-like cells of the mesenchymal subtype of High-Grade Serous Ovarian Carcinoma (HGSC). Intriguingly, components of de novo cholesterol biosynthesis were also enriched. In investigating the suggested link between m6A regulation and sterol metabolism, we established a m6A-dependent stabilization of transcripts encoding rate-limiting de novo cholesterol biosynthetic enzymes by IGF2BP3 towards sustaining cholesterol production. Disruption of this cross-regulation by pharmacological inhibition impaired cell survival, self-renewal, and migration. Analyses of datasets from The Cancer Genome Atlas (TCGA) assigned a clinical significance to this regulatory axis through correlation of elevated expression of de novo cholesterol biosynthetic genes with poor progression-free survival of serous ovarian carcinoma patients. IGF2BP3 knock down, and chemical blockade of de novo cholesterol biosynthesis, both alone or in combination, achieved attenuated disease progression, in vivo. Effectively, our study links RNA modifications with metabolic reprogramming in the HGSC mesenchymal subtype through delineation of a m6A-IGF2BP3-cholesterol biosynthesis axis-mediated regulation of tumor cell stemness and aggression.

转录后RNA修饰已成为干细胞、细胞可塑性、适应压力和转化的关键调节因子。其中,n6 -甲基腺苷(m6A)修饰协调了广泛的生理过程;然而,它对代谢调节的贡献仍然很少得到解决。在本研究中,差异蛋白质组学揭示了m6A机制的核心成分,即WTAP(写入者)和IGF2BP3(读取者)在高级别浆液性卵巢癌(HGSC)间充质亚型的干细胞样细胞中富集。有趣的是,新生胆固醇生物合成的成分也丰富了。在研究m6A调控与胆固醇代谢之间的联系时,我们通过IGF2BP3建立了m6A依赖性稳定转录物编码速率限制的新生胆固醇生物合成酶,以维持胆固醇的产生。通过药物抑制破坏这种交叉调节会损害细胞存活、自我更新和迁移。来自癌症基因组图谱(TCGA)的数据集分析表明,通过将新生胆固醇生物合成基因的表达升高与浆液性卵巢癌患者较差的无进展生存期相关,这一调节轴具有临床意义。在体内,IGF2BP3基因敲低和对新生胆固醇生物合成的化学阻断,无论是单独的还是联合的,都可以减轻疾病的进展。有效地,我们的研究通过描绘m6a - igf2bp3 -胆固醇生物合成轴介导的肿瘤细胞干性和侵袭性调节,将HGSC间充质亚型的RNA修饰与代谢重编程联系起来。
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引用次数: 0
Tagatose consumption provokes metabolic syndrome features in rat males from mothers that consumed fructose during their pregnancy. 食用塔格糖会引起怀孕期间食用果糖的母鼠的雄性代谢综合征。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-29 DOI: 10.1186/s10020-025-01402-3
Elena Fauste, Madelín Pérez-Armas, Cristina Donis, Paola Otero, Mª Isabel Panadero, Carlos Bocos

Background: Maternal fructose intake induces harmful effects in progeny. However, this sugar is not contraindicated during pregnancy. On the other hand, the use of low-calorie sweeteners, such as tagatose, is increasing. Thus, we have studied whether the consumption of tagatose compared to fructose affects lipid metabolism in the offspring of mothers which were supplemented with fructose during their pregnancy.

Methods: Three-month-old male rat offspring from control or fructose mothers received liquid 10% fructose or tagatose for 21 days. A control group (without any additive) was also included. Biochemical and molecular parameters were determined in plasma, tissues and feces.

Results: Both tagatose and fructose consumption caused hypertriglyceridemia in descendants of fructose-fed mothers. Whereas fructose consumption led to a greater hepatic lipogenesis, tagatose supplementation provoked a higher enterohepatic bile acids recirculation, and therefore a higher intestinal lipid absorption and assembly. However, plasma GLP1, a molecule that affects lipid intestinal absorption, was unchanged. Curiously, FGF21, a molecule which regulates lipid and carbohydrate metabolism and is sensitive to GLP1, was augmented in plasma and liver of tagatose-supplemented descendants regardless of their maternal diet. Interestingly, Angiotensin II (Ang II), which can induce FGF21 production, was increased in plasma of all animals supplemented with tagatose. However, the deleterious effects of Ang II were effectively reversed by FGF21 in males from control mothers, but not in descendants of fructose-fed dams.

Conclusions: Maternal fructose consumption determines the response of the offspring to tagatose intake, causing an increased intestinal lipid absorption, and metabolic changes that are characteristic of metabolic syndrome such as dyslipidaemia, steatosis and oxidative stress.

背景:母体摄取果糖会对后代产生有害影响。然而,这种糖在怀孕期间并不是禁忌。另一方面,使用低热量甜味剂,如塔格糖,正在增加。因此,我们研究了与果糖相比,摄入塔格糖是否会影响在怀孕期间补充果糖的母亲的后代的脂质代谢。方法:对照或果糖母鼠的3月龄雄性大鼠子代给予10%果糖或塔格糖液体21天。另设对照组(不含任何添加剂)。测定血浆、组织和粪便中的生化和分子参数。结果:塔格糖和果糖摄入都会引起果糖喂养母亲后代的高甘油三酯血症。果糖摄入导致肝脏脂肪生成,而塔格糖补充则促进肠肝胆汁酸再循环,从而促进肠道脂质吸收和组装。然而,血浆GLP1(一种影响脂质肠道吸收的分子)没有变化。奇怪的是,FGF21(一种调节脂质和碳水化合物代谢并对GLP1敏感的分子)在补充塔格糖的后代的血浆和肝脏中都有所增加,而与母亲的饮食无关。有趣的是,在所有添加塔格糖的动物血浆中,可以诱导FGF21产生的血管紧张素II (Ang II)都增加了。然而,在对照母鼠的雄性中,FGF21有效地逆转了Ang II的有害影响,但在果糖喂养的后代中却没有。结论:母体果糖的摄入决定了后代对塔格糖摄入的反应,导致肠道脂质吸收增加,代谢变化具有代谢综合征的特征,如血脂异常、脂肪变性和氧化应激。
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引用次数: 0
A SARS-CoV-2 spike-derived adjuvant peptide boosts IL-17/IFN-γ immunity and improves anti-PD-L1 therapy against melanoma. SARS-CoV-2刺突衍生的佐剂肽增强IL-17/IFN-γ免疫并改善抗pd - l1治疗黑色素瘤
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-27 DOI: 10.1186/s10020-025-01384-2
Chia-Hung Chen, Tzu-Han Weng, Ta-Wei Kuo, Kai-Yao Huang, Yu-Chi Chen, Hsiao-Hsuan Huang, Hui-Ju Kao, Chen-Lin Yu, Chen-Chen Huang, Shun-Long Weng, Kuang-Wen Liao

Background: PD-L1 immunotherapy plays a crucial role in cancer treatment, but PD-L1 peptide vaccines have low immunogenicity. A potent peptide derived from the spike protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has a significant adjuvant effect, which may increase the immunogenicity of the PD-L1 peptide. This study evaluates whether the PD-L1-SARS peptide enhances PD-L1 immunotherapy and analyzes its potential synergistic effects with anti-PD-L1 antibodies.

Methods: In vivo experiments compared prevention, therapy, and combination therapy using PD-L1 versus PD-L1-SARS peptides in mice. Cytokine multiplex arrays, ELISpot, and IHC were used to evaluate adjuvant effects. Molecular docking (hypothesis-generating), RNA-seq, and LC-MS/MS were used to explore putative mechanisms.

Results: The PD-L1-SARS peptide enhanced the Th1 immune response and increased CD8 and Th17 cell infiltration, effectively inhibiting tumor growth and liver metastasis. Additionally, it promoted M1 macrophage polarization and improved anti-PD-L1 antibody efficacy. Proteomics and bioinformatic analyses were consistent with IFN-γ-linked pathways, and an exploratory docking screen nominated candidate receptors/pathways potentially connecting the adjuvant motif to innate sensing.

Conclusions: Embedding a SARS-derived adjuvant-like motif within a PD-L1 peptide vaccine and delivering it in situ may re-condition the tumor microenvironment toward an immune-activating, Th1/Th17-biased state and complement PD-L1 blockade.

背景:PD-L1免疫治疗在癌症治疗中起着至关重要的作用,但PD-L1肽疫苗的免疫原性较低。从严重急性呼吸综合征冠状病毒2 (SARS-CoV-2)刺突蛋白中提取的一种强效肽具有显著的佐剂作用,这可能增加PD-L1肽的免疫原性。本研究评估PD-L1- sars肽是否增强PD-L1免疫治疗,并分析其与抗PD-L1抗体的潜在协同作用。方法:在小鼠体内实验比较PD-L1与PD-L1- sars肽的预防、治疗和联合治疗。细胞因子多重阵列、ELISpot和免疫组化(IHC)评价佐剂效果。使用分子对接(假设生成)、RNA-seq和LC-MS/MS来探索可能的机制。结果:PD-L1-SARS肽增强Th1免疫应答,增加CD8和Th17细胞浸润,有效抑制肿瘤生长和肝转移。促进M1巨噬细胞极化,提高抗pd - l1抗体的疗效。蛋白质组学和生物信息学分析与IFN-γ连接通路一致,探索性对接筛选提名候选受体/通路,可能将佐剂基序与先天感应连接起来。结论:在PD-L1肽疫苗中嵌入sars衍生的佐剂样基序并原位递送可能会将肿瘤微环境重新调节为免疫激活、Th1/ th17偏向状态并补体PD-L1阻断。
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引用次数: 0
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