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Human pluripotent stem cell-derived retinal ganglion cells: advances in differentiation and translational applications. 人多能干细胞衍生的视网膜神经节细胞:分化和翻译应用的进展。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-08 DOI: 10.1186/s10020-025-01405-0
Jessica Yuen Wuen Ma, Maciej Daniszewski, Alice Pébay

Retinal ganglion cells (RGCs) are neurons that transmit visual information from the retina to the brain. Their degeneration, as seen in glaucoma and other optic neuropathies, leads to irreversible vision loss. As mature human RGCs are difficult to access, most of their studies rely on rodent models, which do not fully recapitulate human retinal biology. Human pluripotent stem cells (hPSCs) provide a promising source for generating RGCs in vitro, supporting disease modelling, drug screening, and future cell replacement therapies. This review outlines key markers that define RGC identity, maturation stages, and subtype diversity. We summarise recent advances in the differentiation of hPSCs towards RGCs, their functional characterisation, and their applications in disease modelling, drug screening, and transplantation.

视网膜神经节细胞(RGCs)是将视觉信息从视网膜传递到大脑的神经元。在青光眼和其他视神经病变中,它们的退化会导致不可逆的视力丧失。由于成熟的人类RGCs很难获得,他们的大多数研究都依赖于啮齿动物模型,这并不能完全概括人类视网膜生物学。人类多能干细胞(hPSCs)为体外生成RGCs提供了一个有希望的来源,支持疾病建模、药物筛选和未来的细胞替代疗法。本文概述了定义RGC身份、成熟阶段和亚型多样性的关键标记。我们总结了造血干细胞向RGCs分化的最新进展,它们的功能特征,以及它们在疾病建模、药物筛选和移植中的应用。
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引用次数: 0
Loss of Parkinson Disease Protein 7 (PARK7) upregulates ROS and cell migration and is associated with recurrent pregnancy loss. 帕金森病蛋白7 (PARK7)的缺失可上调ROS和细胞迁移,并与复发性妊娠丢失有关。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-05 DOI: 10.1186/s10020-025-01344-w
Zhiqi Yang, Emily Hellwich, Nisha Mohd Rafiq, Alvin Joselin, Doo Soon Im, Gaurav Kaushik, Yogesh Singh, Biserka Mulac-Jericevic, Huanhuan Jiang, Irene Gonzalez-Menendez, Leticia Quintanilla-Martinez, Sara Y Brucker, Tilman E Schäffer, Madhuri S Salker
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引用次数: 0
Hydroxyethylamine & phthalimide analogs restoring defects due to GNE dysfunction: rare disease therapeutic significance. 羟乙胺和邻苯二胺类似物修复GNE功能障碍:罕见病的治疗意义。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-03 DOI: 10.1186/s10020-025-01377-1
Shagun Singh, Meenakshi Bansal, Neha Sharma, Vikas Yadav, Fluencephila Mashangva, Jyoti Oswalia, Vaishali Gautam, Gagan Deep Jhingan, Naidu Subbarao, Brijesh Rathi, Ranjana Arya

Rare diseases refer to a group of neglected diseases with low prevalence that face challenges in diagnostics as well as therapeutics due to phenotypic heterogeneity and ineffective clinical trials. In this study, we evaluated two novel analogs of hydroxyethylamine & phthalimide (LTC-181 and LTC-1717) for their potential effect on the epimerase activity of mutant GNE proteins associated with GNE myopathy. GNE gene encodes a key bifunctional sialic acid biosynthetic enzyme, UDP-N-acetyl Glucosamine 2-epimerase/N-acetyl Mannosamine Kinase; GNE). The compounds have significantly increased the epimerase activity of r-F307C-GNE and r-A555V-GNE mutant proteins in vitro. Reduced GNE epimerase activity and sialic acid content in muscle cell-based model for GNE function (SKM-GNEHz) was increased by 2-fold after addition of these compounds. The proteomic study showed that the compounds affected cytoskeletal organization, autophagy and muscle atrophy. Also, treatment with analogs enhanced the cell viability of SKM-GNEHz cells with increased F-actin polymerization and cell migration, thereby, restoring GNE deficient function. Additionally, effect of these compounds was observed with enhanced autophagy and reduced muscle atrophy function in GNE deficient muscle cell. Docking and interaction studies showed that LTC-1717 stabilize GNE better than LTC-181, indicating better therapeutic potential. Overall, this study indicates that HEA-phthalimide analog could be promising leads for treating GNE myopathy.

罕见病是指由于表型异质性和临床试验无效,在诊断和治疗方面面临挑战的一组被忽视的低患病率疾病。在这项研究中,我们评估了两种新的羟乙胺和邻苯二胺类似物(LTC-181和LTC-1717)对与GNE肌病相关的突变GNE蛋白的epimase活性的潜在影响。GNE基因编码一种关键的双功能唾液酸生物合成酶:udp - n -乙酰氨基葡萄糖2-二聚亚胺酶/ n -乙酰甘露糖胺激酶;斯通)。这些化合物在体外显著提高了r-F307C-GNE和r-A555V-GNE突变蛋白的epimase活性。添加这些化合物后,肌细胞GNE功能模型(SKM-GNEHz)的GNE epimase活性和唾液酸含量增加了2倍。蛋白质组学研究表明,这些化合物影响细胞骨架组织、自噬和肌肉萎缩。此外,用类似物处理可以增强SKM-GNEHz细胞的活力,增加F-actin聚合和细胞迁移,从而恢复GNE缺陷的功能。此外,这些化合物对GNE缺陷肌细胞的自噬增强和肌肉萎缩功能降低的作用也被观察到。对接和相互作用研究表明,LTC-1717比LTC-181更能稳定GNE,具有更好的治疗潜力。总的来说,本研究表明hea -邻苯二胺类似物可能是治疗GNE肌病的有希望的线索。
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引用次数: 0
Rethinking strategies for solving thyroid dysfunction at the heart of cardiovascular disease. 重新思考解决心血管疾病核心甲状腺功能障碍的策略。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-02 DOI: 10.1186/s10020-025-01351-x
Viswanathan Rajagopalan, Kaie Ojamaa, A Martin Gerdes

Throughout a person's lifetime, thyroid hormones (THs) have an outsized impact on cardiovascular health from prenatal heart development to adult cardiac contractile function and blood pressure regulation. Maintaining a healthy functioning hypothalamic-thyroid axis is crucial for preventing cardiac-related and all-cause mortality. Patients with moderate to severe heart failure (HF) often manifest with low or borderline-low TH function. In this review article, we examine the potential of TH therapy in HF management by highlighting outcomes from recent clinical studies. We also address the need for a serum-based biomarker such as brain natriuretic peptide (BNP) that indicates disease stage of HF and that also correlates with cardiac tissue TH status. Recent and newer therapeutic strategies (including the combination of Triiodothyronine and Thyroxine) to advance the management of patients living with HF are proposed including a reassessment of what is normal thyroid status in these patients and the potential of TH treatment.

在一个人的一生中,甲状腺激素(THs)对心血管健康有着巨大的影响,从产前心脏发育到成年心脏收缩功能和血压调节。维持健康的下丘脑-甲状腺轴功能对于预防心脏相关和全因死亡至关重要。中重度心力衰竭(HF)患者通常表现为低或边缘性低TH功能。在这篇综述文章中,我们通过强调最近临床研究的结果来研究TH治疗在心衰管理中的潜力。我们还需要一种基于血清的生物标志物,如脑利钠肽(BNP),它指示HF的疾病阶段,也与心脏组织TH状态相关。最近和更新的治疗策略(包括联合使用三碘甲状腺原氨酸和甲状腺素),以促进心衰患者的管理,包括重新评估这些患者的正常甲状腺状态和甲状腺激素治疗的潜力。
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引用次数: 0
Multi-hit TP53 confers the poorest survival in multiple myeloma in the era of novel therapies. 在新疗法时代,多发性骨髓瘤患者的多靶向TP53生存率最低。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-29 DOI: 10.1186/s10020-025-01392-2
Romana Nesnadna, Anna Petrackova, Jiri Minarik, Vojtech Latal, Jirina Manakova, Tomas Papajik, Eva Kriegova

Multiple myeloma (MM) with high-risk (HR) genetic abnormalities has poor prognosis, despite the use of novel therapeutic agents. However, the individual contribution of specific HR genetic abnormalities or their co-occurrence to poor outcomes, especially in the era of novel agents, remains unclear. This study evaluated the impact of multi-hit TP53 (del(17p) and TP53 mutation or ≥ 2 TP53 mutations) compared with other HR abnormalities on progression-free survival (PFS), overall survival (OS) and blood signature in a real-world cohort of 204 patients with MM treated with novel agents (median follow-up 28 months). Patients with multi-hit TP53 (10.4%) had the shortest PFS and OS compared with those with single HR abnormalities (p ≤ 0.011) or with co-occurrence of ≥ 2 other HR abnormalities (p ≤ 0.002), regardless of therapy line. The relative risk of early progression in patients with multi-hit TP53 was almost three times higher than that of patients with other HR abnormalities. The prevalence of TP53 alterations increased in later disease stages: multi-hit TP53 was detected in 7.6% of patients with ≤ 1 prior therapy line and in 36.4% of patients with ≥ 2 prior lines. Patients with multi-hit TP53 also differed in blood signature, particularly in counts of white blood cells, lymphocytes, serum creatinine and β2-microglobulin levels compared with those with other HR abnormalities. In conclusion, multi-hit TP53 is associated with the poorest survival among all HR subgroups in MM. Considering that TP53 alterations accumulate during MM progression and are associated with drug resistance even in the context of novel therapies, our study further emphasizes the need for routine evaluation of both del(17p) and TP53 mutations. Patients with multi-hit TP53 should be prioritized for inclusion in trials of novel therapeutic strategies.

高风险遗传异常的多发性骨髓瘤(MM)预后较差,尽管使用了新的治疗药物。然而,具体的HR遗传异常或其共同发生对不良结果的个体贡献,特别是在新药物时代,仍不清楚。该研究评估了多靶点TP53 (del(17p)和TP53突变或≥2个TP53突变)与其他HR异常相比,对204名接受新药治疗的MM患者的无进展生存期(PFS)、总生存期(OS)和血液特征的影响(中位随访28个月)。与单一HR异常(p≤0.011)或合并≥2种其他HR异常(p≤0.002)的患者相比,无论采用何种治疗方式,多重命中TP53患者(10.4%)的PFS和OS最短。多发TP53患者早期进展的相对风险几乎是其他HR异常患者的3倍。TP53改变的患病率在疾病晚期增加:7.6%的既往治疗≤1个治疗线的患者检测到多重TP53, 36.4%的既往治疗≥2个治疗线的患者检测到多重TP53。与其他HR异常患者相比,多发TP53患者在血液特征上也存在差异,尤其是白细胞、淋巴细胞、血清肌酐和β2微球蛋白水平。总之,在MM的所有HR亚组中,多发TP53与最低生存率相关。考虑到TP53改变在MM进展过程中积累,即使在新疗法的背景下也与耐药有关,我们的研究进一步强调了对del(17p)和TP53突变进行常规评估的必要性。多发TP53患者应优先纳入新治疗策略的试验。
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引用次数: 0
Microgravity activates monocyte ERK1/2 signaling and modulates the response to lipopolysaccharide. 微重力激活单核细胞ERK1/2信号并调节对脂多糖的反应。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-29 DOI: 10.1186/s10020-025-01407-y
Ruslan A Mammadov, Melle P C van Hulten, Max K Bakker, Auke P Verhaar, Maikel P Peppelenbosch

Background: Microgravity alters immune cell function, potentially compromising host defense during spaceflight. Because appropriate immune regulation is also critical in chronic inflammatory and autoimmune conditions, insights from spaceflight biology may have broader implications for human health. Monocyte activation via the p44/42 MAPK pathway is central to inflammatory responses, yet the influence of microgravity on this signaling cascade remains incompletely understood. This study aimed to determine how microgravity affects basal and lipopolysaccharide (LPS)-stimulated ERK1/2 kinases (also known as p44/42 MAP kinases) activity in human monocytes, focusing on signaling state redistribution at both single-cell and population levels.

Methods: Monocytes were cultured during spaceflight under either normal gravity (1G) or microgravity (µG) and exposed to LPS or control conditions. MAPK activity was quantified and analysed to assess basal signaling, stimulus responsiveness, and variability within the population.

Results: Basal MAPK activity was significantly elevated in µG compared with 1G monocytes (p = 0.0181). LPS stimulation robustly increased MAPK activity in 1G cells (p = 0.0267) but not in µG (p = 0.6752). Although baseline signaling was higher in µG, LPS responses in µG and 1G were not significantly different (p = 0.7905). Under microgravity, the cell population displayed broader signaling distribution and a larger non-responsive fraction. Although baseline signaling was higher in µG net LPS responsiveness was diminished compared with 1G.

Conclusion: Microgravity redistributes monocyte signaling states, increasing basal ERK1/2 activity while attenuating rapid stimulus-induced activation and expanding the non-responsive cell fraction. These findings provide new mechanistic insight into how microgravity shapes immune signaling and highlight cellular heterogenety as a critical determinant of immune regulation during spaceflight.

背景:微重力会改变免疫细胞的功能,在太空飞行中可能危及宿主的防御。由于适当的免疫调节在慢性炎症和自身免疫性疾病中也至关重要,航天生物学的见解可能对人类健康产生更广泛的影响。单核细胞通过p44/42 MAPK通路激活是炎症反应的核心,然而微重力对这一信号级联的影响仍不完全清楚。本研究旨在确定微重力如何影响基础和脂多糖(LPS)刺激的ERK1/2激酶(也称为p44/42 MAP激酶)在人单核细胞中的活性,重点关注单细胞和群体水平上的信号状态再分配。方法:在正常重力(1G)和微重力(µG)条件下培养单核细胞,LPS和对照条件下培养。对MAPK活性进行量化和分析,以评估群体内的基础信号、刺激反应和变异性。结果:与1G单核细胞相比,µG组MAPK基础活性显著升高(p = 0.0181)。LPS刺激可显著增加1G细胞的MAPK活性(p = 0.0267),但在µG细胞中无显著增加(p = 0.6752)。虽然基线信号在µG时更高,但在µG和1G时LPS反应没有显著差异(p = 0.7905)。在微重力条件下,细胞群表现出更广泛的信号分布和更大的无反应比例。尽管基线信号在µG时较高,但与1G相比,LPS反应性降低。结论:微重力重新分配单核细胞信号状态,增加基础ERK1/2活性,同时减弱快速刺激诱导的激活,增加无反应细胞的比例。这些发现为微重力如何塑造免疫信号提供了新的机制见解,并突出了细胞异质性作为太空飞行期间免疫调节的关键决定因素。
{"title":"Microgravity activates monocyte ERK1/2 signaling and modulates the response to lipopolysaccharide.","authors":"Ruslan A Mammadov, Melle P C van Hulten, Max K Bakker, Auke P Verhaar, Maikel P Peppelenbosch","doi":"10.1186/s10020-025-01407-y","DOIUrl":"10.1186/s10020-025-01407-y","url":null,"abstract":"<p><strong>Background: </strong>Microgravity alters immune cell function, potentially compromising host defense during spaceflight. Because appropriate immune regulation is also critical in chronic inflammatory and autoimmune conditions, insights from spaceflight biology may have broader implications for human health. Monocyte activation via the p44/42 MAPK pathway is central to inflammatory responses, yet the influence of microgravity on this signaling cascade remains incompletely understood. This study aimed to determine how microgravity affects basal and lipopolysaccharide (LPS)-stimulated ERK1/2 kinases (also known as p44/42 MAP kinases) activity in human monocytes, focusing on signaling state redistribution at both single-cell and population levels.</p><p><strong>Methods: </strong>Monocytes were cultured during spaceflight under either normal gravity (1G) or microgravity (µG) and exposed to LPS or control conditions. MAPK activity was quantified and analysed to assess basal signaling, stimulus responsiveness, and variability within the population.</p><p><strong>Results: </strong>Basal MAPK activity was significantly elevated in µG compared with 1G monocytes (p = 0.0181). LPS stimulation robustly increased MAPK activity in 1G cells (p = 0.0267) but not in µG (p = 0.6752). Although baseline signaling was higher in µG, LPS responses in µG and 1G were not significantly different (p = 0.7905). Under microgravity, the cell population displayed broader signaling distribution and a larger non-responsive fraction. Although baseline signaling was higher in µG net LPS responsiveness was diminished compared with 1G.</p><p><strong>Conclusion: </strong>Microgravity redistributes monocyte signaling states, increasing basal ERK1/2 activity while attenuating rapid stimulus-induced activation and expanding the non-responsive cell fraction. These findings provide new mechanistic insight into how microgravity shapes immune signaling and highlight cellular heterogenety as a critical determinant of immune regulation during spaceflight.</p>","PeriodicalId":18813,"journal":{"name":"Molecular Medicine","volume":" ","pages":"2"},"PeriodicalIF":6.4,"publicationDate":"2025-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12763956/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145636196","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metabolic toxicity and neurological dysfunction in methylmalonic acidemia: from mechanisms to therapeutics. 甲基丙二酸血症的代谢毒性和神经功能障碍:从机制到治疗。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-26 DOI: 10.1186/s10020-025-01395-z
Mengmeng Du, Miaomiao Li, Shengnan Wu, Xue Wu, Yongxing Chen, Changlian Zhu

Methylmalonic acidemia (MMAemia) is an inborn error of organic acid metabolism characterized by the accumulation of toxic metabolites-including methylmalonic acid (MMA), 2-methylcitric acid (2-MCA), propionic acid (PA), homocysteine (Hcy), ammonia, and lactate-due to defects in methylmalonyl-CoA mutase or impaired cobalamin metabolism. These metabolites exert profound effects on the central nervous system, contributing to neurological injury through tightly interconnected mechanisms, including mitochondrial dysfunction, neuroinflammation, and excitotoxicity. This review synthesizes current evidence on how these metabolites trigger neurological dysfunction, integrating findings from clinical studies, animal models, and cellular systems. We also highlight the increasingly recognized role of aberrant post-translational modifications (e.g., methylmalonylation, propionylation, lactylation) in disrupting metabolic network architecture and reprogramming cellular metabolism. Despite advances in supportive therapies, intracerebral metabolite accumulation remains a therapeutic challenge. We discuss emerging strategies targeting mitochondrial protection, redox homeostasis, and inflammation-including enzyme replacement, gene therapy, antioxidant regimens, and exosome-based delivery. A deeper mechanistic understanding of metabolite-driven neurotoxicity is critical to the development of targeted interventions that can improve neurological outcomes in MMAemia.

甲基丙二酸血症(MMAemia)是一种先天性有机酸代谢错误,其特征是由于甲基丙二酸(MMA)、2-甲基柠檬酸(2-MCA)、丙酸(PA)、同型半胱氨酸(Hcy)、氨和乳酸等有毒代谢物的积累,这是由于甲基丙二酸辅酶a变化酶缺陷或钴胺素代谢受损所致。这些代谢物对中枢神经系统产生深远的影响,并通过密切相关的机制导致神经损伤,包括线粒体功能障碍、神经炎症和兴奋性毒性。这篇综述综合了目前关于这些代谢物如何引发神经功能障碍的证据,整合了临床研究、动物模型和细胞系统的发现。我们还强调了越来越多的异常翻译后修饰(例如,甲基丙二酰化,丙酰化,乳酸化)在破坏代谢网络结构和重编程细胞代谢中的作用。尽管支持疗法取得了进展,但脑内代谢物积累仍然是治疗上的挑战。我们讨论了针对线粒体保护、氧化还原稳态和炎症的新兴策略,包括酶替代、基因治疗、抗氧化方案和基于外泌体的递送。对代谢物驱动的神经毒性的更深入的机制理解对于开发能够改善MMAemia神经预后的靶向干预措施至关重要。
{"title":"Metabolic toxicity and neurological dysfunction in methylmalonic acidemia: from mechanisms to therapeutics.","authors":"Mengmeng Du, Miaomiao Li, Shengnan Wu, Xue Wu, Yongxing Chen, Changlian Zhu","doi":"10.1186/s10020-025-01395-z","DOIUrl":"https://doi.org/10.1186/s10020-025-01395-z","url":null,"abstract":"<p><p>Methylmalonic acidemia (MMAemia) is an inborn error of organic acid metabolism characterized by the accumulation of toxic metabolites-including methylmalonic acid (MMA), 2-methylcitric acid (2-MCA), propionic acid (PA), homocysteine (Hcy), ammonia, and lactate-due to defects in methylmalonyl-CoA mutase or impaired cobalamin metabolism. These metabolites exert profound effects on the central nervous system, contributing to neurological injury through tightly interconnected mechanisms, including mitochondrial dysfunction, neuroinflammation, and excitotoxicity. This review synthesizes current evidence on how these metabolites trigger neurological dysfunction, integrating findings from clinical studies, animal models, and cellular systems. We also highlight the increasingly recognized role of aberrant post-translational modifications (e.g., methylmalonylation, propionylation, lactylation) in disrupting metabolic network architecture and reprogramming cellular metabolism. Despite advances in supportive therapies, intracerebral metabolite accumulation remains a therapeutic challenge. We discuss emerging strategies targeting mitochondrial protection, redox homeostasis, and inflammation-including enzyme replacement, gene therapy, antioxidant regimens, and exosome-based delivery. A deeper mechanistic understanding of metabolite-driven neurotoxicity is critical to the development of targeted interventions that can improve neurological outcomes in MMAemia.</p>","PeriodicalId":18813,"journal":{"name":"Molecular Medicine","volume":"31 1","pages":"333"},"PeriodicalIF":6.4,"publicationDate":"2025-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12659462/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145636234","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Differential protein expression and enriched pathways in pediatric sepsis: identification of novel brain-associated biomarkers revealed through proteomic profiling. 儿童败血症的差异蛋白表达和富集途径:通过蛋白质组学分析发现新的脑相关生物标志物。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-26 DOI: 10.1186/s10020-025-01397-x
Vincenzo Stranges, David Tweddell, Enis Cela, Maria Morello, Mark Daley, Gediminas Cepinskas, Douglas D Fraser
{"title":"Differential protein expression and enriched pathways in pediatric sepsis: identification of novel brain-associated biomarkers revealed through proteomic profiling.","authors":"Vincenzo Stranges, David Tweddell, Enis Cela, Maria Morello, Mark Daley, Gediminas Cepinskas, Douglas D Fraser","doi":"10.1186/s10020-025-01397-x","DOIUrl":"10.1186/s10020-025-01397-x","url":null,"abstract":"","PeriodicalId":18813,"journal":{"name":"Molecular Medicine","volume":" ","pages":"14"},"PeriodicalIF":6.4,"publicationDate":"2025-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12875032/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145636225","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of osteoarthritis-related genes and potential drugs based on single cell RNA-seq data. 基于单细胞RNA-seq数据鉴定骨关节炎相关基因和潜在药物。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-25 DOI: 10.1186/s10020-025-01379-z
Ning Wang, Kun Liu, Jia-Li Li, Wei-Wei Pang, Fu-Rong Zhang, Qin Zeng, Yun Deng, Xiao-Chao Qu, Xiang-Ding Chen, Hong-Wen Deng, Li-Jun Tan

Osteoarthritis (OA) is a global problem that seriously affects human health. At present, there is still a lack of effective drugs to treat OA. Therefore, we need to find more drugs with preventive and therapeutic effects on OA. In this study, we obtained single-cell RNA sequencing (scRNA-seq) and bulk-RNA seq datasets from Gene Expression Omnibus (GEO). By using high-dimensional weighted correlation network analysis (hdWGCNA), random forest method and protein-protein interaction (PPI) network analyses, five key genes (CXCL8, CCL20, MMP3, BIRC3 and ICAM1) related to OA were identified and the RT-qPCR experiments verified the differential expression of CXCL8, CCL20 and BIRC3 between Triclocarban (TCC) treated zebrafishes and controls. The SAVERUNNER algorithm predicted 42 candidate drugs. Mendelian randomization (MR) of the candidate drugs showed that the increased expression of TUBB1 led to a reduced risk of OA (β = -0.08, P-value = 4.56E-04), while Cabazitaxel (a microtubule dynamics inhibitor commonly used in the treatment of advanced prostate cancer) inhibits the expression of TUBB1, thus increases the risk of OA. Pitavastatin (a statin lipid-lowering drug that can reduce blood lipid levels and the risk of cardiovascular diseases) target genes expression (for HMGCR [Formula: see text]= 0.13, P-value = 2.67E-06, for ITGAL [Formula: see text]= 0.08, P-value = 6.57E-08) leads to an increased risk of OA, while Pitavastatin inhibits the expression of target genes, thus reduces risk of OA. The zebrafish experiments showed that Pitavastatin can increase the joint space of TCC treated OA zebrafish, while Cabazitaxel can decrease the joint space of TCC treated OA zebrafish. The RT-qPCR results of zebrafish verified that Pitavastatin inhibited the expression of HMGCR, while Cabazitaxel inhibited the expression of TUBB1. Our study suggested that Pitavastatin has therapeutic effects on OA, while Cabazitaxel increases the risk of OA.

骨关节炎是严重影响人类健康的全球性问题。目前,仍缺乏治疗OA的有效药物。因此,我们需要寻找更多对OA有预防和治疗作用的药物。在这项研究中,我们从Gene Expression Omnibus (GEO)获得了单细胞RNA测序(scRNA-seq)和大量RNA测序数据集。通过高维加权相关网络分析(hdWGCNA)、随机森林法和蛋白-蛋白相互作用(PPI)网络分析,鉴定出OA相关的5个关键基因(CXCL8、CCL20、MMP3、BIRC3和ICAM1),并通过RT-qPCR实验验证了三氯卡班(TCC)处理斑马鱼和对照斑马鱼CXCL8、CCL20和BIRC3的表达差异。SAVERUNNER算法预测了42种候选药物。候选药物的孟德尔随机化(Mendelian randomization, MR)结果显示,TUBB1表达增加导致OA风险降低(β = -0.08, p值= 4.56E-04),而卡巴他axel(一种常用的微管动力学抑制剂,用于治疗晚期前列腺癌)抑制TUBB1表达,从而增加OA风险。匹伐他汀(一种他汀类降脂药,可降低血脂水平,降低心血管疾病风险)靶基因表达(HMGCR[公式:见文]= 0.13,p值= 2.67E-06, ITGAL[公式:见文]= 0.08,p值= 6.57E-08)导致OA风险增加,而匹伐他汀抑制靶基因表达,从而降低OA风险。斑马鱼实验表明,匹伐他汀可以增加TCC治疗的OA斑马鱼的关节间隙,而卡巴他赛可以减少TCC治疗的OA斑马鱼的关节间隙。斑马鱼的RT-qPCR结果证实,匹伐他汀抑制HMGCR的表达,卡巴他axel抑制TUBB1的表达。我们的研究表明,匹伐他汀对OA有治疗作用,而卡巴他赛增加OA的风险。
{"title":"Identification of osteoarthritis-related genes and potential drugs based on single cell RNA-seq data.","authors":"Ning Wang, Kun Liu, Jia-Li Li, Wei-Wei Pang, Fu-Rong Zhang, Qin Zeng, Yun Deng, Xiao-Chao Qu, Xiang-Ding Chen, Hong-Wen Deng, Li-Jun Tan","doi":"10.1186/s10020-025-01379-z","DOIUrl":"10.1186/s10020-025-01379-z","url":null,"abstract":"<p><p>Osteoarthritis (OA) is a global problem that seriously affects human health. At present, there is still a lack of effective drugs to treat OA. Therefore, we need to find more drugs with preventive and therapeutic effects on OA. In this study, we obtained single-cell RNA sequencing (scRNA-seq) and bulk-RNA seq datasets from Gene Expression Omnibus (GEO). By using high-dimensional weighted correlation network analysis (hdWGCNA), random forest method and protein-protein interaction (PPI) network analyses, five key genes (CXCL8, CCL20, MMP3, BIRC3 and ICAM1) related to OA were identified and the RT-qPCR experiments verified the differential expression of CXCL8, CCL20 and BIRC3 between Triclocarban (TCC) treated zebrafishes and controls. The SAVERUNNER algorithm predicted 42 candidate drugs. Mendelian randomization (MR) of the candidate drugs showed that the increased expression of TUBB1 led to a reduced risk of OA (β = -0.08, P-value = 4.56E-04), while Cabazitaxel (a microtubule dynamics inhibitor commonly used in the treatment of advanced prostate cancer) inhibits the expression of TUBB1, thus increases the risk of OA. Pitavastatin (a statin lipid-lowering drug that can reduce blood lipid levels and the risk of cardiovascular diseases) target genes expression (for HMGCR [Formula: see text]= 0.13, P-value = 2.67E-06, for ITGAL [Formula: see text]= 0.08, P-value = 6.57E-08) leads to an increased risk of OA, while Pitavastatin inhibits the expression of target genes, thus reduces risk of OA. The zebrafish experiments showed that Pitavastatin can increase the joint space of TCC treated OA zebrafish, while Cabazitaxel can decrease the joint space of TCC treated OA zebrafish. The RT-qPCR results of zebrafish verified that Pitavastatin inhibited the expression of HMGCR, while Cabazitaxel inhibited the expression of TUBB1. Our study suggested that Pitavastatin has therapeutic effects on OA, while Cabazitaxel increases the risk of OA.</p>","PeriodicalId":18813,"journal":{"name":"Molecular Medicine","volume":" ","pages":"1"},"PeriodicalIF":6.4,"publicationDate":"2025-11-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12763847/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145604967","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Microglia-mediated BLA glutamatergic neuronal hyperactivity in the BLA-ACC pathway contributes to stress-induced visceral hypersensitivity and anxiety in rats. 在BLA- acc通路中,小胶质细胞介导的BLA谷氨酸能神经元过度活跃有助于应激诱导的大鼠内脏过敏和焦虑。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-23 DOI: 10.1186/s10020-025-01398-w
Guang-Bing Duan, Jun-Wen Wang, Hui-Hui Sun, Ying Chen, Ewan St John Smith, Ying Huang, Shu-Chang Xu
{"title":"Microglia-mediated BLA glutamatergic neuronal hyperactivity in the BLA-ACC pathway contributes to stress-induced visceral hypersensitivity and anxiety in rats.","authors":"Guang-Bing Duan, Jun-Wen Wang, Hui-Hui Sun, Ying Chen, Ewan St John Smith, Ying Huang, Shu-Chang Xu","doi":"10.1186/s10020-025-01398-w","DOIUrl":"10.1186/s10020-025-01398-w","url":null,"abstract":"","PeriodicalId":18813,"journal":{"name":"Molecular Medicine","volume":" ","pages":"343"},"PeriodicalIF":6.4,"publicationDate":"2025-11-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12751297/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145588088","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Molecular Medicine
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