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Structural variations in evolutionary novel genomic regions: new insights into neurodevelopmental disorders by long-read DNA Sequencing. 进化新基因组区域的结构变异:通过长读DNA测序对神经发育障碍的新见解。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-09 DOI: 10.1186/s10020-025-01415-y
Martina Rincic, Janja Kopic, Valentina Klein, Zeljka Krsnik, Thomas Liehr, Sebastian Giesselmann, Ingo Kurth, Florian Kraft
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引用次数: 0
IL17F+ naïve and IFNγ+ memory CD8 T cells drive hepatic dysfunction in the cecal ligation and puncture model of sepsis. IL17F+ naïve和IFNγ+记忆CD8 T细胞驱动败血症盲肠结扎和穿刺模型肝功能障碍。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-08 DOI: 10.1186/s10020-025-01411-2
Matthew D Taylor, Omar Geier, Alexandria Z Byskosh, Ekaterina Murzin, Ana Nedeljkovic-Kurepa, Grace M Fisler, Mabel N Abraham, Mariana R Brewer, James A Lederer, Clifford S Deutschman
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引用次数: 0
CSF metabolomic signature during therapy for childhood acute lymphoblastic leukemia predicts subsequent working memory impairment. 儿童急性淋巴细胞白血病治疗期间脑脊液代谢组学特征预测随后的工作记忆障碍。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-30 DOI: 10.1186/s10020-025-01414-z
Jeremy Willekens, Sameera Ramjan, Stephen A Sands, Yongkyu Park, Nirajan K C, Melissa A Burns, Jennifer J G Welch, Justine Kahn, Kara M Kelly, Thai-Hoa Tran, Bruno Michon, Lisa Gennarini, Andrew Place, Lewis B Silverman, Peter D Cole
{"title":"CSF metabolomic signature during therapy for childhood acute lymphoblastic leukemia predicts subsequent working memory impairment.","authors":"Jeremy Willekens, Sameera Ramjan, Stephen A Sands, Yongkyu Park, Nirajan K C, Melissa A Burns, Jennifer J G Welch, Justine Kahn, Kara M Kelly, Thai-Hoa Tran, Bruno Michon, Lisa Gennarini, Andrew Place, Lewis B Silverman, Peter D Cole","doi":"10.1186/s10020-025-01414-z","DOIUrl":"10.1186/s10020-025-01414-z","url":null,"abstract":"","PeriodicalId":18813,"journal":{"name":"Molecular Medicine","volume":" ","pages":"12"},"PeriodicalIF":6.4,"publicationDate":"2025-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12865937/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145864089","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bulk and single-cell transcriptome analysis reveal shared key genes and patterns of immune dysregulation in systemic lupus erythematosus and sepsis. 大量和单细胞转录组分析揭示了系统性红斑狼疮和脓毒症免疫失调的共同关键基因和模式。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-30 DOI: 10.1186/s10020-025-01350-y
Xuehuan Wen, Songjie Bai, Kangwei Sun, Kai Zhang, Ruomeng Hu, Shumin Li, Jie Yang, Lanxin Cao, Zhijian Cai, Gensheng Zhang
{"title":"Bulk and single-cell transcriptome analysis reveal shared key genes and patterns of immune dysregulation in systemic lupus erythematosus and sepsis.","authors":"Xuehuan Wen, Songjie Bai, Kangwei Sun, Kai Zhang, Ruomeng Hu, Shumin Li, Jie Yang, Lanxin Cao, Zhijian Cai, Gensheng Zhang","doi":"10.1186/s10020-025-01350-y","DOIUrl":"10.1186/s10020-025-01350-y","url":null,"abstract":"","PeriodicalId":18813,"journal":{"name":"Molecular Medicine","volume":" ","pages":"18"},"PeriodicalIF":6.4,"publicationDate":"2025-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12888134/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145857050","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sex chromosome aneuploidy impacts on human gene expression and regulation: a systematic review. 性染色体非整倍体对人类基因表达和调控的影响:系统综述。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-30 DOI: 10.1186/s10020-025-01404-1
Marcela Legue, Melanie Staszewski, Maya Mastronardo, Gisela Butera, Aleksandra Dakic, Armin Raznahan
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引用次数: 0
Harnessing m6A-regulated cholesterol biosynthesis helps impede tumor burden and stemness in high-garde serous ovarian carcinoma mesenchymal phenotype. 利用m6a调节的胆固醇生物合成有助于抑制高级别浆液性卵巢癌间充质表型的肿瘤负荷和干性。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-29 DOI: 10.1186/s10020-025-01413-0
Aravindan Narayanan, Kiran Dhenge, Sharmila A Bapat

Post-transcriptional RNA modifications have emerged as critical regulators of stemness, cellular plasticity, adaptation to stress and transformation. Amongst these the N6-methyladenosine (m6A) modification orchestrates a wide range of physiological processes; yet its contribution to metabolic regulation remains poorly addressed. In the present study, differential proteomics revealed enrichment of core components of the m6A machinery, viz. WTAP (writer) and IGF2BP3 (reader) in stem-like cells of the mesenchymal subtype of High-Grade Serous Ovarian Carcinoma (HGSC). Intriguingly, components of de novo cholesterol biosynthesis were also enriched. In investigating the suggested link between m6A regulation and sterol metabolism, we established a m6A-dependent stabilization of transcripts encoding rate-limiting de novo cholesterol biosynthetic enzymes by IGF2BP3 towards sustaining cholesterol production. Disruption of this cross-regulation by pharmacological inhibition impaired cell survival, self-renewal, and migration. Analyses of datasets from The Cancer Genome Atlas (TCGA) assigned a clinical significance to this regulatory axis through correlation of elevated expression of de novo cholesterol biosynthetic genes with poor progression-free survival of serous ovarian carcinoma patients. IGF2BP3 knock down, and chemical blockade of de novo cholesterol biosynthesis, both alone or in combination, achieved attenuated disease progression, in vivo. Effectively, our study links RNA modifications with metabolic reprogramming in the HGSC mesenchymal subtype through delineation of a m6A-IGF2BP3-cholesterol biosynthesis axis-mediated regulation of tumor cell stemness and aggression.

转录后RNA修饰已成为干细胞、细胞可塑性、适应压力和转化的关键调节因子。其中,n6 -甲基腺苷(m6A)修饰协调了广泛的生理过程;然而,它对代谢调节的贡献仍然很少得到解决。在本研究中,差异蛋白质组学揭示了m6A机制的核心成分,即WTAP(写入者)和IGF2BP3(读取者)在高级别浆液性卵巢癌(HGSC)间充质亚型的干细胞样细胞中富集。有趣的是,新生胆固醇生物合成的成分也丰富了。在研究m6A调控与胆固醇代谢之间的联系时,我们通过IGF2BP3建立了m6A依赖性稳定转录物编码速率限制的新生胆固醇生物合成酶,以维持胆固醇的产生。通过药物抑制破坏这种交叉调节会损害细胞存活、自我更新和迁移。来自癌症基因组图谱(TCGA)的数据集分析表明,通过将新生胆固醇生物合成基因的表达升高与浆液性卵巢癌患者较差的无进展生存期相关,这一调节轴具有临床意义。在体内,IGF2BP3基因敲低和对新生胆固醇生物合成的化学阻断,无论是单独的还是联合的,都可以减轻疾病的进展。有效地,我们的研究通过描绘m6a - igf2bp3 -胆固醇生物合成轴介导的肿瘤细胞干性和侵袭性调节,将HGSC间充质亚型的RNA修饰与代谢重编程联系起来。
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引用次数: 0
Tagatose consumption provokes metabolic syndrome features in rat males from mothers that consumed fructose during their pregnancy. 食用塔格糖会引起怀孕期间食用果糖的母鼠的雄性代谢综合征。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-29 DOI: 10.1186/s10020-025-01402-3
Elena Fauste, Madelín Pérez-Armas, Cristina Donis, Paola Otero, Mª Isabel Panadero, Carlos Bocos

Background: Maternal fructose intake induces harmful effects in progeny. However, this sugar is not contraindicated during pregnancy. On the other hand, the use of low-calorie sweeteners, such as tagatose, is increasing. Thus, we have studied whether the consumption of tagatose compared to fructose affects lipid metabolism in the offspring of mothers which were supplemented with fructose during their pregnancy.

Methods: Three-month-old male rat offspring from control or fructose mothers received liquid 10% fructose or tagatose for 21 days. A control group (without any additive) was also included. Biochemical and molecular parameters were determined in plasma, tissues and feces.

Results: Both tagatose and fructose consumption caused hypertriglyceridemia in descendants of fructose-fed mothers. Whereas fructose consumption led to a greater hepatic lipogenesis, tagatose supplementation provoked a higher enterohepatic bile acids recirculation, and therefore a higher intestinal lipid absorption and assembly. However, plasma GLP1, a molecule that affects lipid intestinal absorption, was unchanged. Curiously, FGF21, a molecule which regulates lipid and carbohydrate metabolism and is sensitive to GLP1, was augmented in plasma and liver of tagatose-supplemented descendants regardless of their maternal diet. Interestingly, Angiotensin II (Ang II), which can induce FGF21 production, was increased in plasma of all animals supplemented with tagatose. However, the deleterious effects of Ang II were effectively reversed by FGF21 in males from control mothers, but not in descendants of fructose-fed dams.

Conclusions: Maternal fructose consumption determines the response of the offspring to tagatose intake, causing an increased intestinal lipid absorption, and metabolic changes that are characteristic of metabolic syndrome such as dyslipidaemia, steatosis and oxidative stress.

背景:母体摄取果糖会对后代产生有害影响。然而,这种糖在怀孕期间并不是禁忌。另一方面,使用低热量甜味剂,如塔格糖,正在增加。因此,我们研究了与果糖相比,摄入塔格糖是否会影响在怀孕期间补充果糖的母亲的后代的脂质代谢。方法:对照或果糖母鼠的3月龄雄性大鼠子代给予10%果糖或塔格糖液体21天。另设对照组(不含任何添加剂)。测定血浆、组织和粪便中的生化和分子参数。结果:塔格糖和果糖摄入都会引起果糖喂养母亲后代的高甘油三酯血症。果糖摄入导致肝脏脂肪生成,而塔格糖补充则促进肠肝胆汁酸再循环,从而促进肠道脂质吸收和组装。然而,血浆GLP1(一种影响脂质肠道吸收的分子)没有变化。奇怪的是,FGF21(一种调节脂质和碳水化合物代谢并对GLP1敏感的分子)在补充塔格糖的后代的血浆和肝脏中都有所增加,而与母亲的饮食无关。有趣的是,在所有添加塔格糖的动物血浆中,可以诱导FGF21产生的血管紧张素II (Ang II)都增加了。然而,在对照母鼠的雄性中,FGF21有效地逆转了Ang II的有害影响,但在果糖喂养的后代中却没有。结论:母体果糖的摄入决定了后代对塔格糖摄入的反应,导致肠道脂质吸收增加,代谢变化具有代谢综合征的特征,如血脂异常、脂肪变性和氧化应激。
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引用次数: 0
A SARS-CoV-2 spike-derived adjuvant peptide boosts IL-17/IFN-γ immunity and improves anti-PD-L1 therapy against melanoma. SARS-CoV-2刺突衍生的佐剂肽增强IL-17/IFN-γ免疫并改善抗pd - l1治疗黑色素瘤
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-27 DOI: 10.1186/s10020-025-01384-2
Chia-Hung Chen, Tzu-Han Weng, Ta-Wei Kuo, Kai-Yao Huang, Yu-Chi Chen, Hsiao-Hsuan Huang, Hui-Ju Kao, Chen-Lin Yu, Chen-Chen Huang, Shun-Long Weng, Kuang-Wen Liao

Background: PD-L1 immunotherapy plays a crucial role in cancer treatment, but PD-L1 peptide vaccines have low immunogenicity. A potent peptide derived from the spike protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has a significant adjuvant effect, which may increase the immunogenicity of the PD-L1 peptide. This study evaluates whether the PD-L1-SARS peptide enhances PD-L1 immunotherapy and analyzes its potential synergistic effects with anti-PD-L1 antibodies.

Methods: In vivo experiments compared prevention, therapy, and combination therapy using PD-L1 versus PD-L1-SARS peptides in mice. Cytokine multiplex arrays, ELISpot, and IHC were used to evaluate adjuvant effects. Molecular docking (hypothesis-generating), RNA-seq, and LC-MS/MS were used to explore putative mechanisms.

Results: The PD-L1-SARS peptide enhanced the Th1 immune response and increased CD8 and Th17 cell infiltration, effectively inhibiting tumor growth and liver metastasis. Additionally, it promoted M1 macrophage polarization and improved anti-PD-L1 antibody efficacy. Proteomics and bioinformatic analyses were consistent with IFN-γ-linked pathways, and an exploratory docking screen nominated candidate receptors/pathways potentially connecting the adjuvant motif to innate sensing.

Conclusions: Embedding a SARS-derived adjuvant-like motif within a PD-L1 peptide vaccine and delivering it in situ may re-condition the tumor microenvironment toward an immune-activating, Th1/Th17-biased state and complement PD-L1 blockade.

背景:PD-L1免疫治疗在癌症治疗中起着至关重要的作用,但PD-L1肽疫苗的免疫原性较低。从严重急性呼吸综合征冠状病毒2 (SARS-CoV-2)刺突蛋白中提取的一种强效肽具有显著的佐剂作用,这可能增加PD-L1肽的免疫原性。本研究评估PD-L1- sars肽是否增强PD-L1免疫治疗,并分析其与抗PD-L1抗体的潜在协同作用。方法:在小鼠体内实验比较PD-L1与PD-L1- sars肽的预防、治疗和联合治疗。细胞因子多重阵列、ELISpot和免疫组化(IHC)评价佐剂效果。使用分子对接(假设生成)、RNA-seq和LC-MS/MS来探索可能的机制。结果:PD-L1-SARS肽增强Th1免疫应答,增加CD8和Th17细胞浸润,有效抑制肿瘤生长和肝转移。促进M1巨噬细胞极化,提高抗pd - l1抗体的疗效。蛋白质组学和生物信息学分析与IFN-γ连接通路一致,探索性对接筛选提名候选受体/通路,可能将佐剂基序与先天感应连接起来。结论:在PD-L1肽疫苗中嵌入sars衍生的佐剂样基序并原位递送可能会将肿瘤微环境重新调节为免疫激活、Th1/ th17偏向状态并补体PD-L1阻断。
{"title":"A SARS-CoV-2 spike-derived adjuvant peptide boosts IL-17/IFN-γ immunity and improves anti-PD-L1 therapy against melanoma.","authors":"Chia-Hung Chen, Tzu-Han Weng, Ta-Wei Kuo, Kai-Yao Huang, Yu-Chi Chen, Hsiao-Hsuan Huang, Hui-Ju Kao, Chen-Lin Yu, Chen-Chen Huang, Shun-Long Weng, Kuang-Wen Liao","doi":"10.1186/s10020-025-01384-2","DOIUrl":"10.1186/s10020-025-01384-2","url":null,"abstract":"<p><strong>Background: </strong>PD-L1 immunotherapy plays a crucial role in cancer treatment, but PD-L1 peptide vaccines have low immunogenicity. A potent peptide derived from the spike protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has a significant adjuvant effect, which may increase the immunogenicity of the PD-L1 peptide. This study evaluates whether the PD-L1-SARS peptide enhances PD-L1 immunotherapy and analyzes its potential synergistic effects with anti-PD-L1 antibodies.</p><p><strong>Methods: </strong>In vivo experiments compared prevention, therapy, and combination therapy using PD-L1 versus PD-L1-SARS peptides in mice. Cytokine multiplex arrays, ELISpot, and IHC were used to evaluate adjuvant effects. Molecular docking (hypothesis-generating), RNA-seq, and LC-MS/MS were used to explore putative mechanisms.</p><p><strong>Results: </strong>The PD-L1-SARS peptide enhanced the Th1 immune response and increased CD8 and Th17 cell infiltration, effectively inhibiting tumor growth and liver metastasis. Additionally, it promoted M1 macrophage polarization and improved anti-PD-L1 antibody efficacy. Proteomics and bioinformatic analyses were consistent with IFN-γ-linked pathways, and an exploratory docking screen nominated candidate receptors/pathways potentially connecting the adjuvant motif to innate sensing.</p><p><strong>Conclusions: </strong>Embedding a SARS-derived adjuvant-like motif within a PD-L1 peptide vaccine and delivering it in situ may re-condition the tumor microenvironment toward an immune-activating, Th1/Th17-biased state and complement PD-L1 blockade.</p>","PeriodicalId":18813,"journal":{"name":"Molecular Medicine","volume":"31 1","pages":"338"},"PeriodicalIF":6.4,"publicationDate":"2025-12-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12743402/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145846698","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Ghrelin mitigates partial body irradiation-induced gastrointestinal acute radiation syndrome by promoting intestinal stem cell regeneration. 胃饥饿素通过促进肠道干细胞再生减轻部分体辐照诱导的胃肠道急性辐射综合征。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-24 DOI: 10.1186/s10020-025-01399-9
Satoshi Yamaga, Atsushi Murao, Wayne Chaung, Dmitriy Lapin, Yongchan Lee, Ping Wang, Max Brenner

Background: Gastrointestinal acute radiation syndrome (GI-ARS) is characterized by disruption of the intestinal barrier function, leading to bacterial translocation and sepsis. Intestinal stem cells are highly radiosensitive and dramatically reduced after radiation injury. Clusterin (Clu)-positive revival stem cells contribute to the restoration of intestinal stem cells. Ghrelin, a gastric peptide hormone, has been shown to improve intestinal integrity in models of inflammatory enteropathy. In this study, we investigated the effects of ghrelin on intestinal stem cell recovery and its potential to mitigate radiation-induced intestinal injury.

Methods: Mice were subjected to 12 Gy partial body irradiation (PBI). Ghrelin at the doses of 2 to 6 nmol per mouse was administered daily for 4 consecutive days, starting at 24 h post-PBI, and survival was monitored for 30 days. To assess intestinal histology, cell proliferation, and intestinal stem cell markers, mice were treated with 6 nmol of ghrelin on days 1, 2, and 3 post-PBI, and on day 4 jejunal samples were collected for qPCR, immunofluorescence, and microcolony assays. Intestinal permeability was assessed in vivo by the leakage of gavage-fed 4-kDa FITC-dextran into the circulation.

Results: Ghrelin administration significantly improved 30-day survival rate following 12-Gy PBI in a dose-dependent manner. Treatment with ghrelin restored villus length and enhanced intestinal barrier integrity. Ghrelin also significantly increased the expression of proliferation markers in the jejunum. Microcolony assays revealed that ghrelin reversed the decrease in BrdU-positive cells following PBI. The mRNA and protein expression of intestinal stem cell markers was decreased after PBI but was restored by ghrelin treatment. Finally, ghrelin significantly increased the population of Clu+ population following irradiation.

Conclusions: These findings indicate that ghrelin mitigates radiation-induced intestinal injury by promoting the expansion of Clu+ revival stem cells and the recovery of intestinal stem cells. This study highlights the therapeutic potential and identifies the mechanism of action of ghrelin as a medical countermeasure against GI-ARS.

背景:胃肠道急性放射综合征(GI-ARS)的特点是肠道屏障功能破坏,导致细菌易位和败血症。肠道干细胞具有高度的辐射敏感性,在辐射损伤后显著降低。Clusterin (Clu)阳性的再生干细胞有助于肠道干细胞的修复。胃饥饿素,一种胃肽激素,已被证明可以改善炎症性肠病模型的肠道完整性。在这项研究中,我们研究了胃饥饿素对肠道干细胞恢复的影响及其减轻辐射诱导的肠道损伤的潜力。方法:小鼠局部体照射(PBI) 12 Gy。从pbi后24小时开始,每天给药2 - 6 nmol /只小鼠Ghrelin,连续4天,监测生存30天。为了评估肠道组织学、细胞增殖和肠道干细胞标志物,小鼠在pbi后第1、2和3天接受6 nmol胃饥饿素治疗,并在第4天收集空肠样本进行qPCR、免疫荧光和微集落检测。通过灌胃4-kDa fitc -葡聚糖进入循环,评估体内肠道通透性。结果:Ghrelin以剂量依赖的方式显著提高了12 gy PBI后30天生存率。胃饥饿素治疗恢复了绒毛长度,增强了肠屏障的完整性。Ghrelin还显著增加了空肠中增殖标志物的表达。微菌落试验显示,胃饥饿素逆转了PBI后brdu阳性细胞的减少。肠道干细胞标志物mRNA和蛋白表达在PBI后下降,但经胃饥饿素处理后恢复。最后,辐照后ghrelin显著增加了Clu+种群的数量。结论:这些发现提示ghrelin通过促进Clu+复苏干细胞的扩增和肠道干细胞的恢复来减轻辐射诱导的肠道损伤。本研究强调了ghrelin的治疗潜力,并确定了ghrelin作为对抗GI-ARS的医学对策的作用机制。
{"title":"Ghrelin mitigates partial body irradiation-induced gastrointestinal acute radiation syndrome by promoting intestinal stem cell regeneration.","authors":"Satoshi Yamaga, Atsushi Murao, Wayne Chaung, Dmitriy Lapin, Yongchan Lee, Ping Wang, Max Brenner","doi":"10.1186/s10020-025-01399-9","DOIUrl":"10.1186/s10020-025-01399-9","url":null,"abstract":"<p><strong>Background: </strong>Gastrointestinal acute radiation syndrome (GI-ARS) is characterized by disruption of the intestinal barrier function, leading to bacterial translocation and sepsis. Intestinal stem cells are highly radiosensitive and dramatically reduced after radiation injury. Clusterin (Clu)-positive revival stem cells contribute to the restoration of intestinal stem cells. Ghrelin, a gastric peptide hormone, has been shown to improve intestinal integrity in models of inflammatory enteropathy. In this study, we investigated the effects of ghrelin on intestinal stem cell recovery and its potential to mitigate radiation-induced intestinal injury.</p><p><strong>Methods: </strong>Mice were subjected to 12 Gy partial body irradiation (PBI). Ghrelin at the doses of 2 to 6 nmol per mouse was administered daily for 4 consecutive days, starting at 24 h post-PBI, and survival was monitored for 30 days. To assess intestinal histology, cell proliferation, and intestinal stem cell markers, mice were treated with 6 nmol of ghrelin on days 1, 2, and 3 post-PBI, and on day 4 jejunal samples were collected for qPCR, immunofluorescence, and microcolony assays. Intestinal permeability was assessed in vivo by the leakage of gavage-fed 4-kDa FITC-dextran into the circulation.</p><p><strong>Results: </strong>Ghrelin administration significantly improved 30-day survival rate following 12-Gy PBI in a dose-dependent manner. Treatment with ghrelin restored villus length and enhanced intestinal barrier integrity. Ghrelin also significantly increased the expression of proliferation markers in the jejunum. Microcolony assays revealed that ghrelin reversed the decrease in BrdU-positive cells following PBI. The mRNA and protein expression of intestinal stem cell markers was decreased after PBI but was restored by ghrelin treatment. Finally, ghrelin significantly increased the population of Clu<sup>+</sup> population following irradiation.</p><p><strong>Conclusions: </strong>These findings indicate that ghrelin mitigates radiation-induced intestinal injury by promoting the expansion of Clu<sup>+</sup> revival stem cells and the recovery of intestinal stem cells. This study highlights the therapeutic potential and identifies the mechanism of action of ghrelin as a medical countermeasure against GI-ARS.</p>","PeriodicalId":18813,"journal":{"name":"Molecular Medicine","volume":"31 1","pages":"337"},"PeriodicalIF":6.4,"publicationDate":"2025-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12729164/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145827661","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Microbial metabolite 5-formamidoimidazole-4-carboxamide ribotide targets METTL1 to inhibit m7G modification of BRCA1 mRNA to inhibit high-grade serous ovarian cancer. 微生物代谢物5-甲脒咪唑-4-羧酰胺核糖肽靶向METTL1,抑制BRCA1 mRNA的m7G修饰,抑制高级别浆液性卵巢癌。
IF 6.4 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-22 DOI: 10.1186/s10020-025-01396-y
Lixing Chen, Sili He

Background: This study explored the impact of vaginal microbes, metabolites, and METTL1-mediated m7G modification of BRCA1 mRNA on High-Grade Serous Ovarian Cancer (HGSOC).

Methods: METTL1 and BRCA1 expression levels were assessed via bioinformatics, Western blotting, and RT-qPCR. Their interaction was studied using RNA co-immunoprecipitation and RNA pull-down assays. The functions and mechanisms of METTL1 and BRCA1 in HGSOC were investigated through CCK-8 assays, flow cytometry, transwell migration assays, and nude mouse xenograft models. We analyzed vaginal microbial and metabolite differences in HGSOC patients with varying BRCA1 expression using 16 S rRNA sequencing and liquid chromatography. Associations were evaluated with Spearman correlation and heat maps, while molecular docking assessed key metabolite binding to METTL1. The roles and interactions of selected metabolites with METTL1/BRCA1 in HGSOC were validated through in vivo and in vitro experiments.

Results: In HGSOC, both METTL1 and BRCA1 were up-regulated. METTL1 enhanced BRCA1 expression via m7G modification, boosting cell proliferation and tumor growth. Elevated BRCA1 levels were associated with changes in vaginal microbiota, particularly increased Lactobacillus, and alterations in metabolic pathways. Correlation analysis indicated that Lactobacillus was significantly negatively correlated with 5-formamidoimidazole-4-carboxamide ribotide, inosine, cobalt-precorrin-7, and uridine, but positively correlated with L-lysine. The strongest correlation was with 5-formamidoimidazole-4-carboxamide ribotide. Molecular docking showed that this compound binds strongly to METTL1. Functional tests demonstrated that it inhibits HGSOC cell proliferation and tumor growth by disrupting METTL1-mediated m7G modification of BRCA1. Overexpression of METTL1 or BRCA1 negated its anti-tumor effects.

Conclusion: The vaginal microbial metabolite 5-formamidoimidazole-4-carboxamide ribotide reduces BRCA1 expression and slows HGSOC progression by modifying BRCA1 m7G through METTL1, suggesting its potential as an HGSOC treatment.

背景:本研究探讨阴道微生物、代谢物和mettl1介导的BRCA1 mRNA m7G修饰对高级别浆液性卵巢癌(HGSOC)的影响。方法:通过生物信息学、Western blotting和RT-qPCR检测METTL1和BRCA1的表达水平。采用RNA共免疫沉淀法和RNA下拉法研究它们的相互作用。通过CCK-8检测、流式细胞术、跨井迁移实验和裸鼠异种移植模型研究METTL1和BRCA1在HGSOC中的功能和机制。我们使用16s rRNA测序和液相色谱分析了BRCA1表达不同的HGSOC患者阴道微生物和代谢物的差异。通过Spearman相关性和热图评估相关性,而分子对接评估与METTL1结合的关键代谢物。通过体内和体外实验验证了选定代谢物与METTL1/BRCA1在HGSOC中的作用和相互作用。结果:在HGSOC中,METTL1和BRCA1均上调。METTL1通过m7G修饰增强BRCA1表达,促进细胞增殖和肿瘤生长。BRCA1水平升高与阴道微生物群的变化有关,特别是乳酸杆菌的增加,以及代谢途径的改变。相关分析表明,乳酸菌与5-甲脒咪唑-4-羧酰胺核糖肽、肌苷、钴-预corrin-7、尿苷呈显著负相关,与l -赖氨酸呈显著正相关。相关性最强的是5-甲脒-咪唑-4-羧酰胺核肽。分子对接表明,该化合物与METTL1结合较强。功能测试表明,它通过破坏mettl1介导的BRCA1的m7G修饰来抑制HGSOC细胞的增殖和肿瘤生长。METTL1或BRCA1的过表达否定了其抗肿瘤作用。结论:阴道微生物代谢物5-甲脒咪唑-4-羧酰胺核糖肽通过METTL1修饰BRCA1 m7G,降低BRCA1表达,减缓HGSOC进展,提示其治疗HGSOC的潜力。
{"title":"Microbial metabolite 5-formamidoimidazole-4-carboxamide ribotide targets METTL1 to inhibit m7G modification of BRCA1 mRNA to inhibit high-grade serous ovarian cancer.","authors":"Lixing Chen, Sili He","doi":"10.1186/s10020-025-01396-y","DOIUrl":"10.1186/s10020-025-01396-y","url":null,"abstract":"<p><strong>Background: </strong>This study explored the impact of vaginal microbes, metabolites, and METTL1-mediated m7G modification of BRCA1 mRNA on High-Grade Serous Ovarian Cancer (HGSOC).</p><p><strong>Methods: </strong>METTL1 and BRCA1 expression levels were assessed via bioinformatics, Western blotting, and RT-qPCR. Their interaction was studied using RNA co-immunoprecipitation and RNA pull-down assays. The functions and mechanisms of METTL1 and BRCA1 in HGSOC were investigated through CCK-8 assays, flow cytometry, transwell migration assays, and nude mouse xenograft models. We analyzed vaginal microbial and metabolite differences in HGSOC patients with varying BRCA1 expression using 16 S rRNA sequencing and liquid chromatography. Associations were evaluated with Spearman correlation and heat maps, while molecular docking assessed key metabolite binding to METTL1. The roles and interactions of selected metabolites with METTL1/BRCA1 in HGSOC were validated through in vivo and in vitro experiments.</p><p><strong>Results: </strong>In HGSOC, both METTL1 and BRCA1 were up-regulated. METTL1 enhanced BRCA1 expression via m7G modification, boosting cell proliferation and tumor growth. Elevated BRCA1 levels were associated with changes in vaginal microbiota, particularly increased Lactobacillus, and alterations in metabolic pathways. Correlation analysis indicated that Lactobacillus was significantly negatively correlated with 5-formamidoimidazole-4-carboxamide ribotide, inosine, cobalt-precorrin-7, and uridine, but positively correlated with L-lysine. The strongest correlation was with 5-formamidoimidazole-4-carboxamide ribotide. Molecular docking showed that this compound binds strongly to METTL1. Functional tests demonstrated that it inhibits HGSOC cell proliferation and tumor growth by disrupting METTL1-mediated m7G modification of BRCA1. Overexpression of METTL1 or BRCA1 negated its anti-tumor effects.</p><p><strong>Conclusion: </strong>The vaginal microbial metabolite 5-formamidoimidazole-4-carboxamide ribotide reduces BRCA1 expression and slows HGSOC progression by modifying BRCA1 m7G through METTL1, suggesting its potential as an HGSOC treatment.</p>","PeriodicalId":18813,"journal":{"name":"Molecular Medicine","volume":" ","pages":"8"},"PeriodicalIF":6.4,"publicationDate":"2025-12-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12825273/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145810599","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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