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Questioning claims of monitoring the Michael addition reaction at the single-molecule level 质疑在单分子水平上监测迈克尔加成反应的说法
IF 19.2 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-23 DOI: 10.1038/s41557-024-01631-9
Latha Venkataraman, Jan van Ruitenbeek
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引用次数: 0
Intramolecular alkene and functional group translocation 分子内烯和官能团易位
IF 19.2 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-23 DOI: 10.1038/s41557-024-01640-8
Zhu Cao, Chen Zhu
The translocation of alkenes and remote functional groups is an ingenious strategy to reorganize complex structures, yet it is rarely investigated, owing to the challenges in controlling multiple selectivities. Now, an efficient photo/cobalt dual-catalytic method has been developed to accomplish alkene difunctionalization.
烯和远程官能团的易位是重组复杂结构的一种巧妙策略,但由于在控制多选择性方面的挑战,这种策略很少被研究。现在,我们开发出了一种高效的光/钴双催化方法来实现烯的双官能化。
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引用次数: 0
Reply to: Questioning claims of monitoring the Michael addition reaction at the single-molecule level 答复质疑在单分子水平上监测迈克尔加成反应的说法
IF 19.2 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-23 DOI: 10.1038/s41557-024-01632-8
Chen Yang, Kendall N. Houk, Yonatan Dubi, Xuefeng Guo
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引用次数: 0
Modular enantioselective assembly of multi-substituted boron-stereogenic BODIPYs. 模块化对映体选择性组装多取代硼甾原 BODIPY。
IF 19.2 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-20 DOI: 10.1038/s41557-024-01649-z
Li-Qing Ren, Baoquan Zhan, Jiayi Zhao, Yonghong Guo, Bing Zu, Yingzi Li, Chuan He

Boron dipyrromethenes (BODIPYs) are some of the most popular and indispensable tetracoordinate boron compounds and have found widespread applications owing to their excellent spectroscopic and photophysical properties. BODIPYs possessing boron-stereogenic centres are scarce, and strategies for the synthesis of enantioenriched boron-stereogenic BODIPYs with structural diversity remain underdeveloped. In theory, the BODIPY core skeleton has several sites that could be decorated with different substituents. However, due to the lack of general and efficient asymmetric synthetic methods, this potential diversity of chiral BODIPYs has not been exploited. Here we demonstrate a modular enantioselective assembly of multi-substituted boron-stereogenic BODIPYs in high efficiency with excellent enantioselectivities. Key to the success is the Pd-catalysed desymmetric Suzuki cross-coupling, enabling the precise discrimination of the two α C-Cl bonds of the designed prochiral BODIPY scaffold, giving access to a wide range of highly functionalized boron-stereogenic BODIPYs. Derivatizations, photophysical properties and applications in chiral recognition of the obtained optical BODIPYs are further explored.

硼二吡咯烷酮(BODIPYs)是一些最常见且不可或缺的四配位硼化合物,由于其出色的光谱和光物理特性,已被广泛应用。具有固态硼中心的 BODIPYs 非常稀少,而合成具有结构多样性的对映体富硼固态 BODIPYs 的策略仍未得到充分发展。理论上,BODIPY 核心骨架有多个位点,可以用不同的取代基修饰。然而,由于缺乏通用、高效的不对称合成方法,手性 BODIPY 的这种潜在多样性尚未得到开发。在这里,我们展示了一种模块化对映体选择性组装的多取代硼苯乙烯基 BODIPYs,它具有高效率和优异的对映体选择性。成功的关键在于 Pd 催化的不对称铃木交叉耦合,它可以精确区分所设计的原手性 BODIPY 支架的两个 α C-Cl 键,从而获得多种高度官能化的固态硼 BODIPY。我们还进一步探讨了所获得的光学 BODIPY 的衍生化、光物理性质以及在手性识别中的应用。
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引用次数: 0
Ultrafast and scalable materials synthesis with flash-within-flash Joule heating 利用闪中闪焦耳加热技术进行超快、可扩展的材料合成。
IF 19.2 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-20 DOI: 10.1038/s41557-024-01645-3
A method called flash-within-flash Joule heating (FWF) has been developed based on a dual reactor design, enabling the gram-scale synthesis of diverse inorganic materials within seconds. Comparison with commercially available materials suggests that FWF products can offer comparable, or superior, electronic characteristics and tribological performance.
在双反应器设计的基础上开发出了一种名为 "闪中闪焦耳加热"(FWF)的方法,可在几秒钟内合成克级的各种无机材料。与市售材料的比较表明,FWF 产品可提供相当或更优越的电子特性和摩擦学性能。
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引用次数: 0
Fused radical SAM and αKG-HExxH domain proteins contain a distinct structural fold and catalyse cyclophane formation and β-hydroxylation 融合自由基 SAM 和 αKG-HExxH 结构域蛋白含有不同的结构折叠,可催化环烷形成和 β- 羟基化作用
IF 19.2 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-18 DOI: 10.1038/s41557-024-01596-9
Yohei Morishita, Suze Ma, Eugenio De La Mora, He Li, Heng Chen, Xinjian Ji, Anthony Usclat, Patricia Amara, Ryosuke Sugiyama, Yi Wei Tooh, Gregory Gunawan, Julien Pérard, Yvain Nicolet, Qi Zhang, Brandon I. Morinaka
Two of nature’s recurring binding motifs in metalloproteins are the CxxxCxxC motif in radical SAM enzymes and the 2-His-1-carboxylate motif found both in zincins and α-ketoglutarate and non-haem iron enzymes. Here we show the confluence of these two domains in a single post-translational modifying enzyme containing an N-terminal radical S-adenosylmethionine domain fused to a C-terminal 2-His-1-carboxylate (HExxH) domain. The radical SAM domain catalyses three-residue cyclophane formation and is the signature modification of triceptides, a class of ribosomally synthesized and post-translationally modified peptides. The HExxH domain is a defining feature of zinc metalloproteases. Yet the HExxH motif-containing domain studied here catalyses β-hydroxylation and is an α-ketoglutarate non-haem iron enzyme. We determined the crystal structure for this HExxH protein at 2.8 Å, unveiling a distinct structural fold, thus expanding the family of α-ketoglutarate non-haem iron enzymes with a class that we propose to name αKG-HExxH. αKG-HExxH proteins represent a unique family of ribosomally synthesized and post-translationally modified peptide modifying enzymes that can furnish opportunities for genome mining, synthetic biology and enzymology. Radical SAM (rSAM) and 2-His-1-carboxylate enzymes are known to co-occur in RiPP biosynthetic pathways. Here we show the fusion of these enzymes in a single protein where the rSAM enzyme catalyzes cyclophane formation. The 2-His-1-carboxylate enzymes—termed αKG-HExxH—are α-ketoglutarate non-haem iron enzymes that harbour a distinct fold and catalyse β-hydroxylation.
在金属蛋白中,有两个自然界反复出现的结合基团,一个是自由基 SAM 酶中的 CxxxCxxC 基团,另一个是在锌蛋白和 α-酮戊二酸及非血铁酶中发现的 2-His-1-羧酸基团。在这里,我们展示了这两个结构域在一个单一的翻译后修饰酶中的融合,该酶包含一个 N 端自由基 S-腺苷蛋氨酸结构域和一个 C 端 2-His-1-羧酸(HExxH)结构域。自由基 SAM 结构域催化三残基环烷的形成,是三肽这种由核糖体合成并经翻译后修饰的肽类的标志性修饰。HExxH 结构域是锌金属蛋白酶的一个显著特征。然而,本文研究的含 HExxH 主题结构域可催化β-羟基化反应,是一种α-酮戊二酸非血铁酶。我们测定了这种 HExxH 蛋白 2.8 Å 的晶体结构,揭示了一个独特的结构折叠,从而扩展了α-酮戊二酸非血红素铁酶家族,我们建议将其命名为αKG-HExxH。
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引用次数: 0
A single diiron enzyme catalyses the oxidative rearrangement of tryptophan to indole nitrile 一种二铁酶催化色氨酸与吲哚腈的氧化重排反应
IF 21.8 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-16 DOI: 10.1038/s41557-024-01603-z
Sanjoy Adak, Naike Ye, Logan A. Calderone, Meng Duan, Wilson Lubeck, Rebecca J. B. Schäfer, April L. Lukowski, K. N. Houk, Maria-Eirini Pandelia, Catherine L. Drennan, Bradley S. Moore

Nitriles are uncommon in nature and are typically constructed from oximes through the oxidative decarboxylation of amino acid substrates or from the derivatization of carboxylic acids. Here we report a third nitrile biosynthesis strategy featuring the cyanobacterial nitrile synthase AetD. During the biosynthesis of the eagle-killing neurotoxin, aetokthonotoxin, AetD transforms the 2-aminopropionate portion of 5,7-dibromo-l-tryptophan to a nitrile. Employing a combination of structural, biochemical and biophysical techniques, we characterized AetD as a non-haem diiron enzyme that belongs to the emerging haem-oxygenase-like dimetal oxidase superfamily. High-resolution crystal structures of AetD together with the identification of catalytically relevant products provide mechanistic insights into how AetD affords this unique transformation, which we propose proceeds via an aziridine intermediate. Our work presents a unique template for nitrile biogenesis and portrays a substrate binding and metallocofactor assembly mechanism that may be shared among other haem-oxygenase-like dimetal oxidase enzymes.

腈在自然界中并不常见,通常是通过氨基酸底物的氧化脱羧作用或羧酸的衍生作用从肟中合成的。在这里,我们报告了以蓝藻腈合成酶 AetD 为特征的第三种腈类生物合成策略。在杀鹰神经毒素(aetokthonotoxin)的生物合成过程中,AetD 将 5,7-二溴-l-色氨酸的 2-氨基丙酸酯部分转化为腈类。通过综合运用结构、生物化学和生物物理技术,我们将 AetD 定性为一种非血红素二铁酶,属于新兴的血红素氧化酶样二金属氧化酶超家族。AetD 的高分辨率晶体结构以及催化相关产物的鉴定,从机理上揭示了 AetD 如何实现这种独特的转化,我们认为这种转化是通过氮丙啶中间体进行的。我们的工作为腈类的生物生成提供了一个独特的模板,并描绘了一种底物结合和金属因子组装机制,这种机制可能是其他血红素氧化酶类二元氧化酶所共有的。
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引用次数: 0
Small-molecule properties define partitioning into biomolecular condensates 小分子特性决定了生物分子凝聚物的分区
IF 19.2 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-13 DOI: 10.1038/s41557-024-01630-w
Sabareesan Ambadi Thody, Hanna D. Clements, Hamid Baniasadi, Andrew S. Lyon, Matthew S. Sigman, Michael K. Rosen
Biomolecular condensates regulate cellular function by compartmentalizing molecules without a surrounding membrane. Condensate function arises from the specific exclusion or enrichment of molecules. Thus, understanding condensate composition is critical to characterizing condensate function. Whereas principles defining macromolecular composition have been described, understanding of small-molecule composition remains limited. Here we quantified the partitioning of ~1,700 biologically relevant small molecules into condensates composed of different macromolecules. Partitioning varied nearly a million-fold across compounds but was correlated among condensates, indicating that disparate condensates are physically similar. For one system, the enriched compounds did not generally bind macromolecules with high affinity under conditions where condensates do not form, suggesting that partitioning is not governed by site-specific interactions. Correspondingly, a machine learning model accurately predicts partitioning using only computed physicochemical features of the compounds, chiefly those related to solubility and hydrophobicity. These results suggest that a hydrophobic environment emerges upon condensate formation, driving the enrichment and exclusion of small molecules. Biomolecular condensates compartmentalize molecules without membranes. Understanding condensate composition is important given that their function relies on the selective exclusion or enrichment of molecules. Now, investigating small-molecule partitioning reveals variations across compounds, yet correlations indicate physical similarities between disparate condensates. Machine learning accurately predicts partitioning on the basis of physicochemical features, demonstrating the role of a hydrophobic environment in driving enrichment and exclusion.
生物分子凝集物通过在没有周围膜的情况下分隔分子来调节细胞功能。凝聚态的功能源于分子的特定排斥或富集。因此,了解凝结物的组成对于鉴定凝结物的功能至关重要。虽然定义大分子组成的原理已被描述,但对小分子组成的了解仍然有限。在这里,我们量化了 ~1,700 种生物相关小分子在由不同大分子组成的凝聚物中的分配。不同化合物的分区相差近一百万倍,但不同凝聚物之间是相关的,这表明不同的凝聚物在物理上是相似的。在一个系统中,富集的化合物在不形成凝聚态的条件下一般不会与大分子产生高亲和力的结合,这表明分区不受特定位点相互作用的影响。相应地,机器学习模型仅利用计算的化合物理化特征(主要是与溶解度和疏水性有关的特征)就能准确预测分配。这些结果表明,冷凝物形成后会出现疏水环境,推动小分子的富集和排斥。
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引用次数: 0
Stereoselective and site-divergent synthesis of C-glycosides C -糖苷的立体选择性和位点发散合成
IF 21.8 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-13 DOI: 10.1038/s41557-024-01629-3
Sheng Xu, Yuanyuan Ping, Minghao Xu, Guozhen Wu, Yang Ke, Rui Miao, Xiaotian Qi, Wangqing Kong

Carbohydrates play important roles in medicinal chemistry and biochemistry. However, their synthesis relies on specially designed glycosyl donors, which are often unstable and require multi-step synthesis. Furthermore, the catalytic and stereoselective installation of arylated quaternary stereocentres on sugar rings remains a formidable challenge. Here we report a facile and versatile method for the synthesis of diverse C–R (where R is an aryl, heteroaryl, alkenyl, alkynyl or alkyl) glycosides from readily available and bench-stable 1-deoxyglycosides. The reaction proceeds under mild conditions and exhibits high stereoselectivity across a broad range of glycosyl units. This protocol can be used to synthesize challenging 2-deoxyglycosides, unprotected glycosides, non-classical glycosides and deuterated glycosides. We further developed the catalyst-controlled site-divergent functionalization of carbohydrates for the synthesis of various unexplored carbohydrates containing arylated quaternary stereocentres that are inaccessible by existing methods. The synthetic utility of this strategy is further demonstrated in the synthesis of pharmaceutically relevant molecules and carbohydrates.

碳水化合物在药物化学和生物化学中发挥着重要作用。然而,它们的合成依赖于专门设计的糖基供体,这些供体通常不稳定,需要多步合成。此外,在糖环上催化和立体选择性地安装芳基化季铵盐立体中心仍然是一项艰巨的挑战。在此,我们报告了一种简便、多用途的方法,可从易于获得且稳定的 1-脱氧糖苷合成多种 C-R(其中 R 为芳基、杂芳基、烯基、炔基或烷基)糖苷。该反应在温和的条件下进行,在广泛的糖基单元范围内具有很高的立体选择性。该方案可用于合成具有挑战性的 2-脱氧糖苷、无保护糖苷、非经典糖苷和氘代糖苷。我们进一步开发了碳水化合物的催化剂控制位点发散官能化技术,用于合成现有方法无法合成的、含有芳基化季铵盐立体中心的各种未开发碳水化合物。在合成医药相关分子和碳水化合物时,进一步证明了这一策略的合成效用。
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引用次数: 0
Isolation of a NHC-stabilized heavier nitrile and its conversion into an isonitrile analogue 分离 NHC 稳定的重腈并将其转化为异腈类似物
IF 21.8 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-10 DOI: 10.1038/s41557-024-01618-6
Martin E. Doleschal, Arseni Kostenko, Jin Yu Liu, Shigeyoshi Inoue

Nitriles (R–C≡N) have been investigated since the late eighteenth century and are ubiquitous encounters in organic and inorganic syntheses. In contrast, heavier nitriles, which contain the heavier analogues of carbon and nitrogen, are sparsely investigated species. Here we report the synthesis and isolation of a phosphino-silylene featuring an N-heterocyclic carbene-phosphinidene and a highly sterically demanding silyl group as substituents. Due to its unique structural motif, it can be regarded as a Lewis base-stabilized heavier nitrile. The Si–P bond displays multiple bond character and a bent R–Si–P geometry, the latter indicating fundamental differences between heavier and classical nitriles. In solution, a quantitative unusual rearrangement to a phosphasilenylidene occurs. This rearrangement is consistent with theoretical predictions of rearrangements from heavier nitriles to heavier isonitriles. Our preliminary reactivity studies revealed that both isomers exhibit highly nucleophilic silicon centres capable of oxidative addition and coordination to iron tetracarbonyl.

腈(R-C≡N)自十八世纪末以来就一直受到研究,在有机和无机合成中无处不在。相比之下,含有碳和氮的较重类似物的较重腈纶却鲜有研究。在此,我们报告了一种膦基亚硅烷的合成和分离过程,其取代基为一个 N-杂环碳化膦和一个立体要求极高的硅基。由于其独特的结构模式,它可被视为路易斯碱稳定的重腈。Si-P 键显示出多重键特性和弯曲的 R-Si-P 几何形状,后者表明了较重腈与传统腈的根本区别。在溶液中,会发生定量的不寻常重排,生成亚磷酰亚胺。这种重排与理论上从较重的腈类到较重的异腈类的重排预测相一致。我们的初步反应研究表明,这两种异构体都显示出高度亲核的硅中心,能够与四羰基铁发生氧化加成和配位反应。
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引用次数: 0
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Nature chemistry
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