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Developing a scoring system for gene curation prioritization in lysosomal diseases 开发溶酶体疾病基因整理优先级评分系统
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108572
<div><h3>Introduction</h3><p>Diseases caused by lysosomal dysfunction often exhibit multisystemic involvement, resulting in substantial morbidity and mortality. Ensuring accurate diagnoses for individuals with lysosomal diseases (LD) is of great importance, especially with the increasing prominence of genetic testing as a primary diagnostic method. As the list of genes associated with LD continues to expand due to the use of more comprehensive tests such as exome and genome sequencing, it is imperative to understand the clinical validity of the genes, as well as identify appropriate genes for inclusion in multi-gene testing and sequencing panels. The Clinical Genome Resource (ClinGen) works to determine the clinical importance of genes and variants to support precision medicine. As part of this work, ClinGen has developed a semi-quantitative framework to assess the strength of evidence for the role of a gene in a disease. Given the diversity in gene composition across LD panels offered by various laboratories and the evolving comprehension of genetic variants affecting secondary lysosomal functions, we developed a scoring system to define LD (Lysosomal Disease Scoring System - LDSS). This system sought to aid in the prioritization of genes for clinical validity curation and assess their suitability for LD-targeted sequencing panels.</p></div><div><h3>Methods</h3><p>Through literature review encompassing terms associated with both classically designated LD and LFRD, we identified 14 criteria grouped into “Overall Definition,” “Phenotype,” and “Pathophysiology.” These criteria included concepts such as the “accumulation of undigested or partially digested macromolecules within the lysosome” and being “associated with a wide spectrum of clinical manifestations impacting multiple organs and systems.” The criteria, along with their respective weighted values, underwent refinement through expert panel evaluation differentiating them between “major” and “minor” criteria. Subsequently, the LDSS underwent validation on 12 widely acknowledged LD and was later tested by applying these criteria to the Lysosomal Disease Network's (LDN) official Gene List.</p></div><div><h3>Results</h3><p>The final LDSS comprised 4 major criteria and 10 minor criteria, with a cutoff of 2 major or 1 major and 3 minor criteria established to define LD. Interestingly, when applied to both the LDN list and a comprehensive gene list encompassing genes included in clinical panels and published as LFRD genes, we identified four genes (<em>GRN, SLC29A3, CLN7</em> and <em>VPS33A</em>) absent from the LDN list, that were deemed associated with LD. Conversely, a subset of non-classic genes included in the LDN list, such as <em>MTOR</em>, <em>OCRL</em>, and <em>SLC9A6</em>, received lower LDSS scores for their associated disease entities. While these genes may not be suitable for inclusion in clinical LD multi-gene panels, they could be considered for inclusion on other, non-LD gene panel
导言溶酶体功能障碍引起的疾病往往涉及多个系统,导致大量的发病率和死亡率。确保溶酶体疾病(LD)患者的准确诊断非常重要,尤其是随着基因检测作为主要诊断方法的地位日益突出。随着外显子组和基因组测序等更全面检测方法的使用,与溶酶体疾病相关的基因列表不断扩大,了解这些基因的临床有效性以及确定适合纳入多基因检测和测序面板的基因势在必行。临床基因组资源(ClinGen)致力于确定基因和变异的临床重要性,以支持精准医疗。作为这项工作的一部分,ClinGen 开发了一个半定量框架,用于评估基因在疾病中作用的证据强度。考虑到不同实验室提供的 LD 面板中基因组成的多样性,以及对影响次级溶酶体功能的基因变异不断发展的理解,我们开发了一套定义 LD 的评分系统(溶酶体疾病评分系统 - LDSS)。该系统旨在帮助确定基因的优先级,以便进行临床有效性整理,并评估基因是否适合用于 LD 靶向测序板。方法通过文献综述(包括与经典指定的 LD 和 LFRD 相关的术语),我们确定了 14 项标准,分为 "整体定义"、"表型 "和 "病理生理学"。这些标准包括 "未消化或部分消化的大分子在溶酶体内积聚 "和 "与影响多个器官和系统的广泛临床表现相关 "等概念。这些标准及其各自的加权值通过专家小组的评估进行了完善,将其区分为 "主要 "和 "次要 "标准。结果最终的 LDSS 包括 4 个主要标准和 10 个次要标准,定义 LD 的临界值为 2 个主要标准或 1 个主要标准和 3 个次要标准。有趣的是,当同时应用 LDN 列表和包含临床面板中的基因并作为 LFRD 基因公布的综合基因列表时,我们发现了 4 个基因(GRN、SLC29A3、CLN7 和 VPS33A)不在 LDN 列表中,但被认为与 LD 相关。相反,LDN 列表中的一些非经典基因,如 MTOR、OCRL 和 SLC9A6,因其相关疾病实体而获得的 LDSS 分数较低。虽然这些基因可能不适合纳入临床 LD 多基因小组,但可以考虑将它们纳入其他非 LD 基因小组。通过识别在 LDSS 中得分较高的基因,该方法提高了 ClinGen LD GCEP 基因筛选的效率。结论 LDSS 不仅是在临床有效性筛选之前确定基因优先级的工具,还有助于目前关于 LD 定义的讨论。此外,LDSS 还提供了一个灵活的框架,可以适应未来的发现,从而确保其在不断扩展的 LD 研究领域中的相关性。
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引用次数: 0
Treatment of congenital disorders of glycosylation: An overview 先天性糖基化紊乱的治疗:概述
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108567

While the identification and diagnosis of congenital disorders of glycosylation (CDG) have rapidly progressed, the available treatment options are still quite limited. Mostly, we are only able to manage the disease symptoms rather than to address the underlying cause. However, recent years have brought about remarkable advances in treatment approaches for some CDG. Innovative therapies, targeting both the root cause and resulting manifestations, have transitioned from the research stage to practical application. The present paper aims to provide a detailed overview of these exciting developments and the rising concepts that are used to treat these ultra-rare diseases.

虽然先天性糖基化紊乱(CDG)的识别和诊断工作进展迅速,但现有的治疗方案仍然相当有限。大多数情况下,我们只能控制疾病症状,而不能解决根本原因。然而,近年来一些 CDG 的治疗方法取得了显著进展。针对疾病根源和表现的创新疗法已从研究阶段过渡到实际应用阶段。本文旨在详细概述这些令人振奋的进展以及用于治疗这些超罕见疾病的新兴概念。
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引用次数: 0
Assessing carnosinase 1 activity for diagnosing congenital disorders of glycosylation 评估肌肽酶 1 的活性以诊断先天性糖基化紊乱。
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108571

Diagnosing Congenital Disorders of Glycosylation (CDG) is challenging due to clinical heterogeneity and the limited sensitivity of the classic serum transferrin isoelectric focusing (IEF) or capillary zone electrophoresis test. This study investigates the potential of using the glycoprotein carnosinase 1 (CN1) activity as a diagnostic marker for CDG patients. CN1 activity was measured photometrically in serum from 81 genetically confirmed CDG patients and healthy individuals. While the IEF transferrin method detected 77 patients, four remained undetected.

In healthy individuals, serum CN1 activity ranged from 0.1 to 6.4 μmol/ml/h depending on age, with mean CN1 activities up to four-fold higher than in CDG patients. CDG patients´ CN1 activities never exceeded 2,04 μmol/ml/h. Using the 25th percentile to differentiate between groups, the test performance varied by age. For children over 10 years old, the sensitivity and specificity were 96 % and 83 %, respectively. For those under 10, sensitivity and specificity dropped to 71 % and to 64 %. However, CN1 activity successfully identified three of four patients with normal IEF patterns.

Although mean CN1 activity in CDG patients is significantly lower than in healthy controls, the test's reliability for classic CDG diagnosis is limited, as the diagnosis is usually made at a young age. Nevertheless, it is a simple, cost-effective assay that can complement classic tests, especially in settings with limited access to complex methods or for patients with normal transferrin patterns but suspicious for CDG.

由于临床异质性和经典的血清转铁蛋白等电聚焦(IEF)或毛细管区带电泳检测的灵敏度有限,诊断先天性糖基化紊乱(CDG)具有挑战性。本研究探讨了使用糖蛋白肌球蛋白酶 1(CN1)活性作为 CDG 患者诊断标志物的可能性。通过光度法测量了 81 名经基因确诊的 CDG 患者和健康人血清中的 CN1 活性。虽然 IEF 转铁蛋白法检测出 77 名患者,但仍有 4 名患者未被检测出来。健康人血清中的 CN1 活性从 0.1 到 6.4 μmol/ml/h 不等,取决于年龄,平均 CN1 活性是 CDG 患者的四倍。CDG 患者的 CN1 活性从未超过 2.04 μmol/ml/h。以第 25 百分位数来区分不同组别,测试结果因年龄而异。10 岁以上儿童的灵敏度和特异性分别为 96 % 和 83 %。对于 10 岁以下的儿童,灵敏度和特异性分别下降到 71% 和 64%。不过,CN1 活性成功识别了四名 IEF 模式正常的患者中的三名。虽然 CDG 患者的 CN1 平均活性明显低于健康对照组,但由于 CDG 通常在幼年时就能确诊,因此该检测对典型 CDG 诊断的可靠性有限。不过,这是一种简单、经济有效的检测方法,可以作为传统检测方法的补充,尤其是在无法使用复杂方法的情况下,或者对于转铁蛋白模式正常但疑似 CDG 的患者。
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引用次数: 0
Continuous glucose monitoring metrics in people with liver glycogen storage disease and idiopathic ketotic hypoglycemia: A single-center, retrospective, observational study 肝糖原贮积症和特发性酮症性低血糖患者的连续血糖监测指标:一项单中心、回顾性、观察性研究。
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108573

Background

Cohort data on continuous glucose monitoring (CGM) metrics are scarce for liver glycogen storage diseases (GSDs) and idiopathic ketotic hypoglycemia (IKH). The aim of this study was to retrospectively describe CGM metrics for people with liver GSDs and IKH.

Patients and methods

CGM metrics (descriptive, glycemic variation and glycemic control parameters) were calculated for 47 liver GSD and 14 IKH patients, categorized in cohorts by disease subtype, age and treatment status, and compared to published age-matched CGM metrics from healthy individuals. Glycemic control was assessed as time-in-range (TIR; ≥3.9 - ≤7.8 and ≥3.9 - ≤10.0 mmol/L), time-below-range (TBR; <3.0 mmol/L and ≥3.0 - ≤3.9 mmol/L), and time-above-range (TAR; >7.8 and >10.0 mmol/L).

Results

Despite all patients receiving dietary treatment, GSD cohorts displayed significantly different CGM metrics compared to healthy individuals. Decreased TIR together with increased TAR were noted in GSD I, GSD III, and GSD XI (Fanconi-Bickel syndrome) cohorts (all p < 0.05). In addition, all GSD I cohorts showed increased TBR (all p < 0.05). In GSD IV an increased TBR (p < 0.05) and decreased TAR were noted (p < 0.05). In GSD IX only increased TAR was observed (p < 0.05). IKH patient cohorts, both with and without treatment, presented CGM metrics similar to healthy individuals.

Conclusion

Despite dietary treatment, most liver GSD cohorts do not achieve CGM metrics comparable to healthy individuals. International recommendations on the use of CGM and clinical targets for CGM metrics in liver GSD patients are warranted, both for patient care and clinical trials.

背景:肝糖原贮积症(GSD)和特发性酮症性低血糖(IKH)的连续血糖监测(CGM)指标的队列数据很少。本研究旨在回顾性描述肝糖原贮积症和特发性酮症低血糖症患者的 CGM 指标:对 47 名肝脏 GSD 患者和 14 名 IKH 患者的 CGM 指标(描述性、血糖变化和血糖控制参数)进行了计算,并按疾病亚型、年龄和治疗状态进行了分组,与已发表的健康人的年龄匹配 CGM 指标进行了比较。评估血糖控制情况的标准是血糖在量程内的时间(TIR;≥3.9 -≤7.8 和 ≥3.9 -≤10.0 mmol/L)、血糖在量程外的时间(TBR;7.8 和 >10.0 mmol/L):结果:尽管所有患者都接受了饮食治疗,但与健康人相比,GSD 组群的 CGM 指标有显著差异。在 GSD I、GSD III 和 GSD XI(范康尼-比克尔综合征)队列中,TIR 降低,TAR 升高(均为 p):尽管进行了饮食治疗,但大多数肝脏 GSD 队列的 CGM 指标仍无法与健康人相媲美。有必要就肝脏 GSD 患者 CGM 的使用和 CGM 指标的临床目标提出国际建议,这既适用于患者护理,也适用于临床试验。
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引用次数: 0
Severity-adjusted evaluation of initial dialysis on short-term health outcomes in urea cycle disorders
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108566

Objective

In individuals with urea cycle disorders (UCDs) and neonatal disease onset, extracorporeal detoxification by continuous kidney replacement therapy is considered the therapeutic method of choice in addition to metabolic emergency treatment to resolve hyperammonemic decompensation. However, the indications for the initiation of dialysis are heterogeneously implemented transnationally, thereby hampering our understanding of (optimal) short-term health outcomes.

Methods

We performed a retrospective comparative analysis evaluating the therapeutic effects of initial dialysis on survival as well as neurocognitive outcome parameters in individuals with UCDs in comparison to a severity-adjusted non-dialyzed control cohort. Overall, 108 individuals with a severe phenotype of male ornithine transcarbamylase deficiency (mOTC-D), citrullinemia type 1 (CTLN1) and argininosuccinic aciduria (ASA) were investigated by stratification based on a recently established and validated genotype-specific disease prediction model.

Results

Mortality is associated with the height of initial peak plasma ammonium concentration, but appears to be independent from treatment with initial dialysis in mOTC-D. However, improved survival after initial dialysis was observed in CTLN1, while there was a trend towards improved survival in ASA. In survivors, annual frequency of (subsequent) metabolic decompensations did not differ between the dialyzed and non-dialyzed cohorts. Moreover, treatment with initial dialysis was not associated with improved neurocognitive outcomes.

Interpretation

The present severity-adjusted comparative analysis reveals that general practice of initial dialysis is neither associated with improved survival in individuals with mOTC-D nor does it differ with regard to the neurocognitive outcome for the investigated UCD subtypes. However, initial dialysis might potentially prove beneficial for survival in CTLN1 and ASA.

Clinical trial registration: The UCDC database is recorded at the US National Library of Medicine (https://clinicaltrials.gov).

目的 在患有尿素循环障碍(UCD)和新生儿疾病的患者中,通过持续肾脏替代疗法进行体外排毒被认为是除代谢紧急治疗外解决高血氨症失代偿的首选治疗方法。我们进行了一项回顾性比较分析,评估了初始透析对 UCD 患者生存期和神经认知结果参数的治疗效果,并与严重程度调整后的非透析对照组进行了比较。根据最近建立并验证的基因型特异性疾病预测模型进行分层,对108名患有男性鸟氨酸转氨酶缺乏症(mOTC-D)、瓜氨酸血症1型(CTLN1)和精氨酸琥珀酸尿症(ASA)的严重表型患者进行了调查。然而,在 CTLN1 中观察到初始透析后存活率有所提高,而在 ASA 中则有提高存活率的趋势。在幸存者中,透析组和非透析组每年发生(后续)代谢失代偿的频率没有差异。此外,初始透析治疗与神经认知结果的改善无关。 本严重程度调整比较分析显示,初始透析的一般做法既与 mOTC-D 患者生存率的改善无关,也与所调查的 UCD 亚型的神经认知结果无关。不过,初次透析可能会对 CTLN1 和 ASA 患者的生存率有利:UCDC 数据库记录在美国国家医学图书馆 (https://clinicaltrials.gov) 中。
{"title":"Severity-adjusted evaluation of initial dialysis on short-term health outcomes in urea cycle disorders","authors":"","doi":"10.1016/j.ymgme.2024.108566","DOIUrl":"10.1016/j.ymgme.2024.108566","url":null,"abstract":"<div><h3>Objective</h3><p>In individuals with urea cycle disorders (UCDs) and neonatal disease onset, extracorporeal detoxification by continuous kidney replacement therapy is considered the therapeutic method of choice in addition to metabolic emergency treatment to resolve hyperammonemic decompensation. However, the indications for the initiation of dialysis are heterogeneously implemented transnationally, thereby hampering our understanding of (optimal) short-term health outcomes.</p></div><div><h3>Methods</h3><p>We performed a retrospective comparative analysis evaluating the therapeutic effects of initial dialysis on survival as well as neurocognitive outcome parameters in individuals with UCDs in comparison to a severity-adjusted non-dialyzed control cohort. Overall, 108 individuals with a severe phenotype of male ornithine transcarbamylase deficiency (mOTC-D), citrullinemia type 1 (CTLN1) and argininosuccinic aciduria (ASA) were investigated by stratification based on a recently established and validated genotype-specific disease prediction model.</p></div><div><h3>Results</h3><p>Mortality is associated with the height of initial peak plasma ammonium concentration, but appears to be independent from treatment with initial dialysis in mOTC-D. However, improved survival after initial dialysis was observed in CTLN1, while there was a trend towards improved survival in ASA. In survivors, annual frequency of (subsequent) metabolic decompensations did not differ between the dialyzed and non-dialyzed cohorts. Moreover, treatment with initial dialysis was not associated with improved neurocognitive outcomes.</p></div><div><h3>Interpretation</h3><p>The present severity-adjusted comparative analysis reveals that general practice of initial dialysis is neither associated with improved survival in individuals with mOTC-D nor does it differ with regard to the neurocognitive outcome for the investigated UCD subtypes. However, initial dialysis might potentially prove beneficial for survival in CTLN1 and ASA.</p><p><strong>Clinical trial registration</strong>: The UCDC database is recorded at the US National Library of Medicine (<span><span>https://clinicaltrials.gov</span><svg><path></path></svg></span>).</p></div>","PeriodicalId":18937,"journal":{"name":"Molecular genetics and metabolism","volume":null,"pages":null},"PeriodicalIF":3.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1096719224004505/pdfft?md5=95d6eb8d68af172011e052eabd55c6b2&pid=1-s2.0-S1096719224004505-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142240409","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Maple syrup urine disease diagnosis in Brazilian patients by massive parallel sequencing 通过大规模平行测序诊断巴西患者的枫糖尿病
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108569

Biallelic pathogenic variants cause maple syrup urine disease (MSUD) in one of the branched-chain α-keto acid dehydrogenase (BCKDH) complex genes (BCKDHA, BCKDHB, DBT, DLD, and PPM1K) leading to the accumulation of leucine, isoleucine, and valine. This study aimed to perform a molecular diagnosis of Brazilian patients with MSUD using gene panels and massive parallel sequencing. Eighteen Brazilian patients with a biochemical diagnosis of MSUD were analyzed by massive parallel sequencing in the Ion PGM Torrent Server using a gene panel with the BCKDHA, BCKDHB, and DBT genes. The American College of Medical Genetics and Genomics guidelines were used to determine variant pathogenicity. Thirteen patients had both variants found by massive parallel sequencing, whereas 3 patients had only one variant found. In 2 patients, the variants were not found by this analysis. These 5 patients required additional Sanger sequencing to confirm their genotype. Twenty-five pathogenic variants were identified in the 3 MSUD-related genes (BCKDHA, BCKDHB, and DBT). Most variants were present in the BCKDHB gene, and no common variants were found. Nine novel variants were observed: c.922 A > G, c.964C > A, and c.1237 T > C in the BCKDHA gene; and c.80_90dup, c.384delA, c.478 A > T, c.528C > G, c.977 T > C, and c.1039-2 A > G in the BCKDHB gene. All novel variants were classified as pathogenic. Molecular modeling of the novel variants indicated that the binding of monomers was affected in the BCKDH complex tetramer, which could lead to a change in the stability and activity of the enzyme. Massive parallel sequencing with targeted gene panels seems to be a cost-effective method that can provide a molecular diagnosis of MSUD.

支链α-酮酸脱氢酶(BCKDH)复合基因(BCKDHA、BCKDHB、DBT、DLD 和 PPM1K)中的一个基因的双叶致病变体会导致亮氨酸、异亮氨酸和缬氨酸的积累,从而引起枫糖尿病(MSUD)。本研究旨在利用基因组和大规模平行测序技术对巴西的 MSUD 患者进行分子诊断。研究人员在 Ion PGM Torrent 服务器上使用 BCKDHA、BCKDHB 和 DBT 基因组成的基因面板,对 18 名生化诊断为 MSUD 的巴西患者进行了大规模平行测序分析。美国医学遗传学和基因组学学院指南用于确定变体的致病性。有13名患者通过大规模平行测序发现了两个变异体,而有3名患者只发现了一个变异体。有 2 名患者的变异体没有被这项分析发现。这 5 名患者需要额外的 Sanger 测序来确认其基因型。在 3 个 MSUD 相关基因(BCKDHA、BCKDHB 和 DBT)中发现了 25 个致病变体。大多数变异出现在 BCKDHB 基因中,没有发现常见变异。在 BCKDHA 基因中发现了 9 个新变异:c.922 A >G、c.964C >A、c.1237 T >C;在 BCKDHB 基因中发现了 c.80_90dup、c.384delA、c.478 A >T、c.528C >G、c.977 T >C、c.1039-2 A >G。所有新型变异都被归类为致病性变异。新型变异体的分子建模表明,BCKDH 复合物四聚体中单体的结合受到了影响,这可能会导致酶的稳定性和活性发生变化。使用靶向基因组进行大规模平行测序似乎是一种经济有效的方法,可对 MSUD 进行分子诊断。
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引用次数: 0
CIC variants and folinic acid-responsive seizures CIC变体和亚叶酸反应性癫痫发作
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108574
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引用次数: 0
Sensitivity of transferrin isoform analysis for PMM2-CDG 转铁蛋白同工酶分析对 PMM2-CDG 的敏感性
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108564

Transferrin isoform analysis is an established laboratory test for congenital disorders of glycosylation (CDG). Despite its long history of clinical use, little has been published about its empirical sensitivity for specific conditions. We conducted a retrospective analysis of ten years of testing data and report our experience with transferrin testing for type I profiles and its sensitivity for the most common congenital disorder of glycosylation, PMM2-CDG. The data demonstrate 94% overall test sensitivity for PMM2-CDG and importantly demonstrate two known, recurrent variants enriched in false positive cases highlighting an important limitation of the test. The data confirm the clinical validity of transferrin isotype analysis as a screening test for disorders of protein N-linked glycosylation and as functional test for PMM2 genotypes of uncertain significance.

转铁蛋白同工酶分析是检测先天性糖基化紊乱(CDG)的一种成熟的实验室检测方法。尽管转铁蛋白的临床应用历史悠久,但有关其对特定病症的经验灵敏度却鲜有报道。我们对十年来的检测数据进行了回顾性分析,报告了转铁蛋白检测I型轮廓的经验及其对最常见的先天性糖基化紊乱(PMM2-CDG)的敏感性。数据显示 PMM2-CDG 的总体检测灵敏度为 94%,重要的是,数据显示假阳性病例中富含两种已知的复发性变异,这凸显了该检测的一个重要局限性。这些数据证实了转铁蛋白异型分析作为蛋白质N-连接糖基化紊乱筛查检验和意义不确定的PMM2基因型功能检验的临床有效性。
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引用次数: 0
Development of a signs and symptoms outcome measure for caregivers of patients with methylmalonic acidemia and propionic acidemia (MMAPAQ)
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108577
<div><h3>Background and objective</h3><p>Methylmalonic acidemia (MMA) and propionic acidemia (PA) are rare inborn errors of metabolism with shared signs and symptoms that are associated with significant morbidity and mortality. No disease-specific clinical outcomes assessment instruments for MMA and/or PA currently exist to capture the patient perspective in clinical trials. Because patients with these conditions are generally young and have cognitive impairments, an observer-reported outcome (ObsRO) instrument is crucial. We report results from qualitative research supporting development of the Methylmalonic Acidemia and Propionic Acidemia Questionnaire (MMAPAQ), a signs and symptoms ObsRO measure for caregivers of patients with MMA and/or PA.</p></div><div><h3>Methods</h3><p>Concept elicitation (CE) interviews were conducted with 35 participants across 2 studies who were aged ≥18 years and caregivers of patients with a confirmed diagnosis of MMA or PA, and an additional 5 patients aged ≥6 years with MMA or PA in Study 1, to identify core signs/symptoms for inclusion in the MMAPAQ. All interviews were conducted in English. Study 2 included cognitive interviews (CI) with caregivers and clinical experts to further assess content validity. CE and a conceptual framework review were also conducted with clinical experts to further support findings.</p></div><div><h3>Results</h3><p>A consistent set of signs/symptoms of MMA and PA were reported by eligible caregivers interviewed in study 1 (<em>n</em> = 21) and study 2 (<em>n</em> = 14), representing 11 patients with MMA and 20 with PA. Based on concepts reported in study 1, a draft instrument was constructed and compared with the Pediatric Quality of Life Inventory™ (PedsQL™) and Family Impact module, demonstrating face validity for measuring key signs/symptoms important to patients and caregivers. The PedsQL™ and Family Impact modules were preferred to assess patient and caregiver impacts. Two waves of CE and CIs were conducted in study 2, with wave 1 resulting in removal of 7 items and other revisions to improve clarity, and wave 2 resulting in modification of examples used for 2 items. The final instrument consisted of the following 7 items assessed over the past 7 days using a Likert-type response scale ranging from “never” to “very often”: uncontrollable or involuntary movements, dehydration, rapid breathing at rest, appearing lethargic, appearing disinterested in eating, refusing to eat, and vomiting.</p></div><div><h3>Conclusions</h3><p>This study establishes the content validity of the MMAPAQ as the first ObsRO questionnaire for measuring core signs and symptoms of MMA and PA in clinical trials and community research. Scoring and psychometric measurement properties of the MMAPAQ will be established in future studies. The PedsQL™ was found to have face validity in measuring concepts that affect the MMA and PA patient populations and should also be considered for use in clinical trials in MMA and
背景和目的甲基丙二酸血症(MMA)和丙酸血症(PA)是罕见的先天性代谢异常,具有共同的体征和症状,与严重的发病率和死亡率相关。目前还没有针对 MMA 和/或 PA 的特定疾病临床结果评估工具,无法在临床试验中从患者的角度进行评估。由于这些疾病的患者一般都很年轻,而且有认知障碍,因此观察者报告结果(ObsRO)工具至关重要。我们报告了支持甲基丙二酸血症和丙酸血症问卷(MMAPAQ)开发的定性研究结果,该问卷是针对甲基丙二酸血症和/或丙酸血症患者护理人员的体征和症状观察结果评估工具。方法在两项研究中,我们对年龄≥18岁的35名参与者和确诊为甲基丙二酸血症或丙酸血症患者的护理人员进行了概念激发(CE)访谈,并在研究1中对另外5名年龄≥6岁的甲基丙二酸血症或丙酸血症患者进行了访谈,以确定纳入MMAPAQ的核心体征/症状。所有访谈均以英语进行。研究 2 包括对护理人员和临床专家进行认知访谈 (CI),以进一步评估内容效度。结果在研究 1(n = 21)和研究 2(n = 14)中,符合条件的护理人员报告了一组一致的 MMA 和 PA 体征/症状,分别代表 11 名 MMA 患者和 20 名 PA 患者。根据研究 1 中报告的概念,我们构建了一个工具草案,并与儿科生活质量量表™ (PedsQL™) 和家庭影响模块进行了比较,结果表明该工具在测量对患者和护理人员非常重要的关键体征/症状方面具有表面效度。PedsQL™ 和家庭影响模块是评估患者和护理人员影响的首选。在研究 2 中进行了两波 CE 和 CI,第一波删除了 7 个项目,并进行了其他修改以提高清晰度,第二波修改了 2 个项目所用的示例。最终的问卷包括以下 7 个项目,采用李克特(Likert)式反应量表,从 "从不 "到 "非常频繁 "对过去 7 天的情况进行评估:无法控制或不自主的运动、脱水、休息时呼吸急促、昏昏欲睡、对进食不感兴趣、拒绝进食和呕吐。MMAPAQ 的评分和心理测量特性将在今后的研究中确定。研究发现 PedsQL™ 在测量影响 MMA 和 PA 患者群体的概念方面具有表面效度,因此也应考虑用于 MMA 和 PA 的临床试验。
{"title":"Development of a signs and symptoms outcome measure for caregivers of patients with methylmalonic acidemia and propionic acidemia (MMAPAQ)","authors":"","doi":"10.1016/j.ymgme.2024.108577","DOIUrl":"10.1016/j.ymgme.2024.108577","url":null,"abstract":"&lt;div&gt;&lt;h3&gt;Background and objective&lt;/h3&gt;&lt;p&gt;Methylmalonic acidemia (MMA) and propionic acidemia (PA) are rare inborn errors of metabolism with shared signs and symptoms that are associated with significant morbidity and mortality. No disease-specific clinical outcomes assessment instruments for MMA and/or PA currently exist to capture the patient perspective in clinical trials. Because patients with these conditions are generally young and have cognitive impairments, an observer-reported outcome (ObsRO) instrument is crucial. We report results from qualitative research supporting development of the Methylmalonic Acidemia and Propionic Acidemia Questionnaire (MMAPAQ), a signs and symptoms ObsRO measure for caregivers of patients with MMA and/or PA.&lt;/p&gt;&lt;/div&gt;&lt;div&gt;&lt;h3&gt;Methods&lt;/h3&gt;&lt;p&gt;Concept elicitation (CE) interviews were conducted with 35 participants across 2 studies who were aged ≥18 years and caregivers of patients with a confirmed diagnosis of MMA or PA, and an additional 5 patients aged ≥6 years with MMA or PA in Study 1, to identify core signs/symptoms for inclusion in the MMAPAQ. All interviews were conducted in English. Study 2 included cognitive interviews (CI) with caregivers and clinical experts to further assess content validity. CE and a conceptual framework review were also conducted with clinical experts to further support findings.&lt;/p&gt;&lt;/div&gt;&lt;div&gt;&lt;h3&gt;Results&lt;/h3&gt;&lt;p&gt;A consistent set of signs/symptoms of MMA and PA were reported by eligible caregivers interviewed in study 1 (&lt;em&gt;n&lt;/em&gt; = 21) and study 2 (&lt;em&gt;n&lt;/em&gt; = 14), representing 11 patients with MMA and 20 with PA. Based on concepts reported in study 1, a draft instrument was constructed and compared with the Pediatric Quality of Life Inventory™ (PedsQL™) and Family Impact module, demonstrating face validity for measuring key signs/symptoms important to patients and caregivers. The PedsQL™ and Family Impact modules were preferred to assess patient and caregiver impacts. Two waves of CE and CIs were conducted in study 2, with wave 1 resulting in removal of 7 items and other revisions to improve clarity, and wave 2 resulting in modification of examples used for 2 items. The final instrument consisted of the following 7 items assessed over the past 7 days using a Likert-type response scale ranging from “never” to “very often”: uncontrollable or involuntary movements, dehydration, rapid breathing at rest, appearing lethargic, appearing disinterested in eating, refusing to eat, and vomiting.&lt;/p&gt;&lt;/div&gt;&lt;div&gt;&lt;h3&gt;Conclusions&lt;/h3&gt;&lt;p&gt;This study establishes the content validity of the MMAPAQ as the first ObsRO questionnaire for measuring core signs and symptoms of MMA and PA in clinical trials and community research. Scoring and psychometric measurement properties of the MMAPAQ will be established in future studies. The PedsQL™ was found to have face validity in measuring concepts that affect the MMA and PA patient populations and should also be considered for use in clinical trials in MMA and","PeriodicalId":18937,"journal":{"name":"Molecular genetics and metabolism","volume":null,"pages":null},"PeriodicalIF":3.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S109671922400461X/pdfft?md5=2f6d364f0bed4c7573b3801b3060eed7&pid=1-s2.0-S109671922400461X-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142240410","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterisation of infantile cardiomyopathy in Alström syndrome using ALMS1 knockout induced pluripotent stem cell derived cardiomyocyte model 利用 ALMS1 基因敲除诱导多能干细胞衍生的心肌细胞模型描述阿尔斯特罗姆综合征婴儿心肌病的特征。
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108575

Alström syndrome (AS) is an inherited rare ciliopathy characterised by multi-organ dysfunction and premature cardiovascular disease. This may manifest as an infantile-onset dilated cardiomyopathy with significant associated mortality. An adult-onset restrictive cardiomyopathy may also feature later in life. Loss of function pathogenic variants in ALMS1 have been identified in AS patients, leading to a lack of ALMS1 protein. The biological role of ALMS1 is unknown, particularly in a cardiovascular context. To understand the role of ALMS1 in infantile cardiomyopathy, the reduction of ALMS1 protein seen in AS patients was modelled using human induced pluripotent stem cell-derived cardiomyocytes (iPSC-CMs), in which ALMS1 was knocked out. MuscleMotion analysis and calcium optical mapping experiments suggest that ALMS1 knockout (KO) cells have increased contractility, with altered calcium extrusion and impaired calcium handling dynamics compared to wildtype (WT) counterparts. Seahorse metabolic assays showed ALMS1 knockout iPSC-CMs had increased glycolytic and mitochondrial respiration rates, with ALMS1 knockout cells portraying increased energetic demand and respiratory capacity than WT counterparts. Using senescence associated β-galactosidase (SA-β gal) staining assay, we identified increased senescence of ALMS1 knockout iPSC-CMs. Overall, this study provides insights into the molecular mechanisms in AS, particularly the role of ALMS1 in infantile cardiomyopathy in AS, using iPSC-CMs as a ‘disease in a dish’ model to provide insights into multiple aspects of this complex disease.

阿尔斯特罗姆综合征(AS)是一种遗传性罕见纤毛病,以多器官功能障碍和过早出现心血管疾病为特征。这种病可能表现为婴儿期发病的扩张型心肌病,死亡率很高。成年后也可能出现限制性心肌病。在强直性脊柱炎患者中发现了 ALMS1 的功能缺失致病变体,导致 ALMS1 蛋白缺乏。ALMS1的生物学作用尚不清楚,尤其是在心血管方面。为了了解ALMS1在婴幼儿心肌病中的作用,我们使用敲除了ALMS1的人类诱导多能干细胞衍生心肌细胞(iPSC-CMs)模拟了AS患者体内ALMS1蛋白的减少。肌肉运动分析和钙光学映射实验表明,与野生型(WT)细胞相比,ALMS1基因敲除(KO)细胞的收缩力增强,钙挤出发生改变,钙处理动力学受损。海马代谢测定显示,ALMS1基因敲除iPSC-CMs的糖酵解和线粒体呼吸速率增加,ALMS1基因敲除细胞的能量需求和呼吸能力均高于WT细胞。通过衰老相关的β-半乳糖苷酶(SA-β gal)染色检测,我们发现 ALMS1 基因敲除 iPSC-CMs 的衰老程度增加。总之,这项研究深入揭示了强直性脊柱炎的分子机制,特别是ALMS1在强直性脊柱炎婴儿心肌病中的作用,利用iPSC-CMs作为 "皿中疾病 "模型,深入揭示了这种复杂疾病的多个方面。
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Molecular genetics and metabolism
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