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Developing a scoring system for gene curation prioritization in lysosomal diseases 开发溶酶体疾病基因整理优先级评分系统
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108572
Matheus Vernet Machado Bressan Wilke , Jennifer Goldstein , Emily Groopman , Shruthi Mohan , Amber Waddell , Raquel Fernandez , Hongjie Chen , Deeksha Bali , Heather Baudet , Lorne Clarke , Christina Hung , Rong Mao , Tatiana Yuzyuk , William J. Craigen , Filippo Pinto e Vairo
<div><h3>Introduction</h3><p>Diseases caused by lysosomal dysfunction often exhibit multisystemic involvement, resulting in substantial morbidity and mortality. Ensuring accurate diagnoses for individuals with lysosomal diseases (LD) is of great importance, especially with the increasing prominence of genetic testing as a primary diagnostic method. As the list of genes associated with LD continues to expand due to the use of more comprehensive tests such as exome and genome sequencing, it is imperative to understand the clinical validity of the genes, as well as identify appropriate genes for inclusion in multi-gene testing and sequencing panels. The Clinical Genome Resource (ClinGen) works to determine the clinical importance of genes and variants to support precision medicine. As part of this work, ClinGen has developed a semi-quantitative framework to assess the strength of evidence for the role of a gene in a disease. Given the diversity in gene composition across LD panels offered by various laboratories and the evolving comprehension of genetic variants affecting secondary lysosomal functions, we developed a scoring system to define LD (Lysosomal Disease Scoring System - LDSS). This system sought to aid in the prioritization of genes for clinical validity curation and assess their suitability for LD-targeted sequencing panels.</p></div><div><h3>Methods</h3><p>Through literature review encompassing terms associated with both classically designated LD and LFRD, we identified 14 criteria grouped into “Overall Definition,” “Phenotype,” and “Pathophysiology.” These criteria included concepts such as the “accumulation of undigested or partially digested macromolecules within the lysosome” and being “associated with a wide spectrum of clinical manifestations impacting multiple organs and systems.” The criteria, along with their respective weighted values, underwent refinement through expert panel evaluation differentiating them between “major” and “minor” criteria. Subsequently, the LDSS underwent validation on 12 widely acknowledged LD and was later tested by applying these criteria to the Lysosomal Disease Network's (LDN) official Gene List.</p></div><div><h3>Results</h3><p>The final LDSS comprised 4 major criteria and 10 minor criteria, with a cutoff of 2 major or 1 major and 3 minor criteria established to define LD. Interestingly, when applied to both the LDN list and a comprehensive gene list encompassing genes included in clinical panels and published as LFRD genes, we identified four genes (<em>GRN, SLC29A3, CLN7</em> and <em>VPS33A</em>) absent from the LDN list, that were deemed associated with LD. Conversely, a subset of non-classic genes included in the LDN list, such as <em>MTOR</em>, <em>OCRL</em>, and <em>SLC9A6</em>, received lower LDSS scores for their associated disease entities. While these genes may not be suitable for inclusion in clinical LD multi-gene panels, they could be considered for inclusion on other, non-LD gene panel
导言溶酶体功能障碍引起的疾病往往涉及多个系统,导致大量的发病率和死亡率。确保溶酶体疾病(LD)患者的准确诊断非常重要,尤其是随着基因检测作为主要诊断方法的地位日益突出。随着外显子组和基因组测序等更全面检测方法的使用,与溶酶体疾病相关的基因列表不断扩大,了解这些基因的临床有效性以及确定适合纳入多基因检测和测序面板的基因势在必行。临床基因组资源(ClinGen)致力于确定基因和变异的临床重要性,以支持精准医疗。作为这项工作的一部分,ClinGen 开发了一个半定量框架,用于评估基因在疾病中作用的证据强度。考虑到不同实验室提供的 LD 面板中基因组成的多样性,以及对影响次级溶酶体功能的基因变异不断发展的理解,我们开发了一套定义 LD 的评分系统(溶酶体疾病评分系统 - LDSS)。该系统旨在帮助确定基因的优先级,以便进行临床有效性整理,并评估基因是否适合用于 LD 靶向测序板。方法通过文献综述(包括与经典指定的 LD 和 LFRD 相关的术语),我们确定了 14 项标准,分为 "整体定义"、"表型 "和 "病理生理学"。这些标准包括 "未消化或部分消化的大分子在溶酶体内积聚 "和 "与影响多个器官和系统的广泛临床表现相关 "等概念。这些标准及其各自的加权值通过专家小组的评估进行了完善,将其区分为 "主要 "和 "次要 "标准。结果最终的 LDSS 包括 4 个主要标准和 10 个次要标准,定义 LD 的临界值为 2 个主要标准或 1 个主要标准和 3 个次要标准。有趣的是,当同时应用 LDN 列表和包含临床面板中的基因并作为 LFRD 基因公布的综合基因列表时,我们发现了 4 个基因(GRN、SLC29A3、CLN7 和 VPS33A)不在 LDN 列表中,但被认为与 LD 相关。相反,LDN 列表中的一些非经典基因,如 MTOR、OCRL 和 SLC9A6,因其相关疾病实体而获得的 LDSS 分数较低。虽然这些基因可能不适合纳入临床 LD 多基因小组,但可以考虑将它们纳入其他非 LD 基因小组。通过识别在 LDSS 中得分较高的基因,该方法提高了 ClinGen LD GCEP 基因筛选的效率。结论 LDSS 不仅是在临床有效性筛选之前确定基因优先级的工具,还有助于目前关于 LD 定义的讨论。此外,LDSS 还提供了一个灵活的框架,可以适应未来的发现,从而确保其在不断扩展的 LD 研究领域中的相关性。
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引用次数: 0
Assessing carnosinase 1 activity for diagnosing congenital disorders of glycosylation 评估肌肽酶 1 的活性以诊断先天性糖基化紊乱。
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108571
Livia Interdonato , Nastassja Himmelreich , Sven F. Garbade , Dan Wen , Marina Morath , Rosanna Di Paola , Vittorio Calabrese , Christian Thiel , Verena Peters

Diagnosing Congenital Disorders of Glycosylation (CDG) is challenging due to clinical heterogeneity and the limited sensitivity of the classic serum transferrin isoelectric focusing (IEF) or capillary zone electrophoresis test. This study investigates the potential of using the glycoprotein carnosinase 1 (CN1) activity as a diagnostic marker for CDG patients. CN1 activity was measured photometrically in serum from 81 genetically confirmed CDG patients and healthy individuals. While the IEF transferrin method detected 77 patients, four remained undetected.

In healthy individuals, serum CN1 activity ranged from 0.1 to 6.4 μmol/ml/h depending on age, with mean CN1 activities up to four-fold higher than in CDG patients. CDG patients´ CN1 activities never exceeded 2,04 μmol/ml/h. Using the 25th percentile to differentiate between groups, the test performance varied by age. For children over 10 years old, the sensitivity and specificity were 96 % and 83 %, respectively. For those under 10, sensitivity and specificity dropped to 71 % and to 64 %. However, CN1 activity successfully identified three of four patients with normal IEF patterns.

Although mean CN1 activity in CDG patients is significantly lower than in healthy controls, the test's reliability for classic CDG diagnosis is limited, as the diagnosis is usually made at a young age. Nevertheless, it is a simple, cost-effective assay that can complement classic tests, especially in settings with limited access to complex methods or for patients with normal transferrin patterns but suspicious for CDG.

由于临床异质性和经典的血清转铁蛋白等电聚焦(IEF)或毛细管区带电泳检测的灵敏度有限,诊断先天性糖基化紊乱(CDG)具有挑战性。本研究探讨了使用糖蛋白肌球蛋白酶 1(CN1)活性作为 CDG 患者诊断标志物的可能性。通过光度法测量了 81 名经基因确诊的 CDG 患者和健康人血清中的 CN1 活性。虽然 IEF 转铁蛋白法检测出 77 名患者,但仍有 4 名患者未被检测出来。健康人血清中的 CN1 活性从 0.1 到 6.4 μmol/ml/h 不等,取决于年龄,平均 CN1 活性是 CDG 患者的四倍。CDG 患者的 CN1 活性从未超过 2.04 μmol/ml/h。以第 25 百分位数来区分不同组别,测试结果因年龄而异。10 岁以上儿童的灵敏度和特异性分别为 96 % 和 83 %。对于 10 岁以下的儿童,灵敏度和特异性分别下降到 71% 和 64%。不过,CN1 活性成功识别了四名 IEF 模式正常的患者中的三名。虽然 CDG 患者的 CN1 平均活性明显低于健康对照组,但由于 CDG 通常在幼年时就能确诊,因此该检测对典型 CDG 诊断的可靠性有限。不过,这是一种简单、经济有效的检测方法,可以作为传统检测方法的补充,尤其是在无法使用复杂方法的情况下,或者对于转铁蛋白模式正常但疑似 CDG 的患者。
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引用次数: 0
Continuous glucose monitoring metrics in people with liver glycogen storage disease and idiopathic ketotic hypoglycemia: A single-center, retrospective, observational study 肝糖原贮积症和特发性酮症性低血糖患者的连续血糖监测指标:一项单中心、回顾性、观察性研究。
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108573
Ruben J. Overduin , Annieke Venema , Charlotte M.A. Lubout , Marieke J. Fokkert-Wilts , Foekje De Boer , Andrea B. Schreuder , Alessandro Rossi , Terry G.J. Derks

Background

Cohort data on continuous glucose monitoring (CGM) metrics are scarce for liver glycogen storage diseases (GSDs) and idiopathic ketotic hypoglycemia (IKH). The aim of this study was to retrospectively describe CGM metrics for people with liver GSDs and IKH.

Patients and methods

CGM metrics (descriptive, glycemic variation and glycemic control parameters) were calculated for 47 liver GSD and 14 IKH patients, categorized in cohorts by disease subtype, age and treatment status, and compared to published age-matched CGM metrics from healthy individuals. Glycemic control was assessed as time-in-range (TIR; ≥3.9 - ≤7.8 and ≥3.9 - ≤10.0 mmol/L), time-below-range (TBR; <3.0 mmol/L and ≥3.0 - ≤3.9 mmol/L), and time-above-range (TAR; >7.8 and >10.0 mmol/L).

Results

Despite all patients receiving dietary treatment, GSD cohorts displayed significantly different CGM metrics compared to healthy individuals. Decreased TIR together with increased TAR were noted in GSD I, GSD III, and GSD XI (Fanconi-Bickel syndrome) cohorts (all p < 0.05). In addition, all GSD I cohorts showed increased TBR (all p < 0.05). In GSD IV an increased TBR (p < 0.05) and decreased TAR were noted (p < 0.05). In GSD IX only increased TAR was observed (p < 0.05). IKH patient cohorts, both with and without treatment, presented CGM metrics similar to healthy individuals.

Conclusion

Despite dietary treatment, most liver GSD cohorts do not achieve CGM metrics comparable to healthy individuals. International recommendations on the use of CGM and clinical targets for CGM metrics in liver GSD patients are warranted, both for patient care and clinical trials.

背景:肝糖原贮积症(GSD)和特发性酮症性低血糖(IKH)的连续血糖监测(CGM)指标的队列数据很少。本研究旨在回顾性描述肝糖原贮积症和特发性酮症低血糖症患者的 CGM 指标:对 47 名肝脏 GSD 患者和 14 名 IKH 患者的 CGM 指标(描述性、血糖变化和血糖控制参数)进行了计算,并按疾病亚型、年龄和治疗状态进行了分组,与已发表的健康人的年龄匹配 CGM 指标进行了比较。评估血糖控制情况的标准是血糖在量程内的时间(TIR;≥3.9 -≤7.8 和 ≥3.9 -≤10.0 mmol/L)、血糖在量程外的时间(TBR;7.8 和 >10.0 mmol/L):结果:尽管所有患者都接受了饮食治疗,但与健康人相比,GSD 组群的 CGM 指标有显著差异。在 GSD I、GSD III 和 GSD XI(范康尼-比克尔综合征)队列中,TIR 降低,TAR 升高(均为 p):尽管进行了饮食治疗,但大多数肝脏 GSD 队列的 CGM 指标仍无法与健康人相媲美。有必要就肝脏 GSD 患者 CGM 的使用和 CGM 指标的临床目标提出国际建议,这既适用于患者护理,也适用于临床试验。
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引用次数: 0
Severity-adjusted evaluation of initial dialysis on short-term health outcomes in urea cycle disorders 尿素循环障碍患者初始透析对短期健康结果的严重程度调整评估
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108566
Matthias Zielonka , Stefan Kölker , Sven F. Garbade , Florian Gleich , Sandesh C.S. Nagamani , Andrea L. Gropman , Ann-Catrin Druck , Nesrine Ramdhouni , Laura Göde , Georg F. Hoffmann , Roland Posset

Objective

In individuals with urea cycle disorders (UCDs) and neonatal disease onset, extracorporeal detoxification by continuous kidney replacement therapy is considered the therapeutic method of choice in addition to metabolic emergency treatment to resolve hyperammonemic decompensation. However, the indications for the initiation of dialysis are heterogeneously implemented transnationally, thereby hampering our understanding of (optimal) short-term health outcomes.

Methods

We performed a retrospective comparative analysis evaluating the therapeutic effects of initial dialysis on survival as well as neurocognitive outcome parameters in individuals with UCDs in comparison to a severity-adjusted non-dialyzed control cohort. Overall, 108 individuals with a severe phenotype of male ornithine transcarbamylase deficiency (mOTC-D), citrullinemia type 1 (CTLN1) and argininosuccinic aciduria (ASA) were investigated by stratification based on a recently established and validated genotype-specific disease prediction model.

Results

Mortality is associated with the height of initial peak plasma ammonium concentration, but appears to be independent from treatment with initial dialysis in mOTC-D. However, improved survival after initial dialysis was observed in CTLN1, while there was a trend towards improved survival in ASA. In survivors, annual frequency of (subsequent) metabolic decompensations did not differ between the dialyzed and non-dialyzed cohorts. Moreover, treatment with initial dialysis was not associated with improved neurocognitive outcomes.

Interpretation

The present severity-adjusted comparative analysis reveals that general practice of initial dialysis is neither associated with improved survival in individuals with mOTC-D nor does it differ with regard to the neurocognitive outcome for the investigated UCD subtypes. However, initial dialysis might potentially prove beneficial for survival in CTLN1 and ASA.

Clinical trial registration: The UCDC database is recorded at the US National Library of Medicine (https://clinicaltrials.gov).

目的 在患有尿素循环障碍(UCD)和新生儿疾病的患者中,通过持续肾脏替代疗法进行体外排毒被认为是除代谢紧急治疗外解决高血氨症失代偿的首选治疗方法。我们进行了一项回顾性比较分析,评估了初始透析对 UCD 患者生存期和神经认知结果参数的治疗效果,并与严重程度调整后的非透析对照组进行了比较。根据最近建立并验证的基因型特异性疾病预测模型进行分层,对108名患有男性鸟氨酸转氨酶缺乏症(mOTC-D)、瓜氨酸血症1型(CTLN1)和精氨酸琥珀酸尿症(ASA)的严重表型患者进行了调查。然而,在 CTLN1 中观察到初始透析后存活率有所提高,而在 ASA 中则有提高存活率的趋势。在幸存者中,透析组和非透析组每年发生(后续)代谢失代偿的频率没有差异。此外,初始透析治疗与神经认知结果的改善无关。 本严重程度调整比较分析显示,初始透析的一般做法既与 mOTC-D 患者生存率的改善无关,也与所调查的 UCD 亚型的神经认知结果无关。不过,初次透析可能会对 CTLN1 和 ASA 患者的生存率有利:UCDC 数据库记录在美国国家医学图书馆 (https://clinicaltrials.gov) 中。
{"title":"Severity-adjusted evaluation of initial dialysis on short-term health outcomes in urea cycle disorders","authors":"Matthias Zielonka ,&nbsp;Stefan Kölker ,&nbsp;Sven F. Garbade ,&nbsp;Florian Gleich ,&nbsp;Sandesh C.S. Nagamani ,&nbsp;Andrea L. Gropman ,&nbsp;Ann-Catrin Druck ,&nbsp;Nesrine Ramdhouni ,&nbsp;Laura Göde ,&nbsp;Georg F. Hoffmann ,&nbsp;Roland Posset","doi":"10.1016/j.ymgme.2024.108566","DOIUrl":"10.1016/j.ymgme.2024.108566","url":null,"abstract":"<div><h3>Objective</h3><p>In individuals with urea cycle disorders (UCDs) and neonatal disease onset, extracorporeal detoxification by continuous kidney replacement therapy is considered the therapeutic method of choice in addition to metabolic emergency treatment to resolve hyperammonemic decompensation. However, the indications for the initiation of dialysis are heterogeneously implemented transnationally, thereby hampering our understanding of (optimal) short-term health outcomes.</p></div><div><h3>Methods</h3><p>We performed a retrospective comparative analysis evaluating the therapeutic effects of initial dialysis on survival as well as neurocognitive outcome parameters in individuals with UCDs in comparison to a severity-adjusted non-dialyzed control cohort. Overall, 108 individuals with a severe phenotype of male ornithine transcarbamylase deficiency (mOTC-D), citrullinemia type 1 (CTLN1) and argininosuccinic aciduria (ASA) were investigated by stratification based on a recently established and validated genotype-specific disease prediction model.</p></div><div><h3>Results</h3><p>Mortality is associated with the height of initial peak plasma ammonium concentration, but appears to be independent from treatment with initial dialysis in mOTC-D. However, improved survival after initial dialysis was observed in CTLN1, while there was a trend towards improved survival in ASA. In survivors, annual frequency of (subsequent) metabolic decompensations did not differ between the dialyzed and non-dialyzed cohorts. Moreover, treatment with initial dialysis was not associated with improved neurocognitive outcomes.</p></div><div><h3>Interpretation</h3><p>The present severity-adjusted comparative analysis reveals that general practice of initial dialysis is neither associated with improved survival in individuals with mOTC-D nor does it differ with regard to the neurocognitive outcome for the investigated UCD subtypes. However, initial dialysis might potentially prove beneficial for survival in CTLN1 and ASA.</p><p><strong>Clinical trial registration</strong>: The UCDC database is recorded at the US National Library of Medicine (<span><span>https://clinicaltrials.gov</span><svg><path></path></svg></span>).</p></div>","PeriodicalId":18937,"journal":{"name":"Molecular genetics and metabolism","volume":"143 1","pages":"Article 108566"},"PeriodicalIF":3.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1096719224004505/pdfft?md5=95d6eb8d68af172011e052eabd55c6b2&pid=1-s2.0-S1096719224004505-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142240409","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Systemic complications of Aicardi Goutières syndrome using real-world data 利用真实世界的数据研究艾卡迪-古蒂耶尔综合征的全身并发症
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108578
Isabella Peixoto de Barcelos , Amanda K. Jan , Nicholson Modesti , Sarah Woidill , Francesco Gavazzi , David Isaacs , Russell D'Aiello , Anjana Sevagamoorthy , Lauren Charlton , Amy Pizzino , Johanna Schmidt , Keith van Haren , Stephanie Keller , Florian Eichler , Lisa T. Emrick , Jamie L. Fraser , Justine Shults , Adeline Vanderver , Laura A. Adang
<div><h3>Objective</h3><div>Aicardi Goutières Syndrome (AGS) is a rare genetic interferonopathy associated with diverse multisystemic complications. A critical gap exists in our understanding of its longitudinal, systemic disease burden, complicated by delayed diagnosis. To address this need, real-world data extracted from existing medical records were used to characterize the longitudinal disease burden.</div></div><div><h3>Methods</h3><div>All subjects (<em>n</em> = 167) with genetically confirmed AGS enrolled in the Myelin Disorders Biorepository Project (MDBP) were included. As available in medical records, information was collected on subject demographics, age of onset, and disease complications. Information from published cases of AGS (2007–2022; <em>n</em> = 129) with individual-level data was also collected. Neurologic severity at the last available encounter was determined by retrospectively assigning the AGS Severity Scale [severe (0–3), moderate (4–8), and mild (9–11)].</div></div><div><h3>Results</h3><div>The genotype frequency in the natural history cohort was <em>TREX1</em> (<em>n</em> = 26, 15.6 %), <em>RNASEH2B</em> (<em>n</em> = 50, 29.9 %), <em>RNASEH2C</em> (<em>n</em> = 3, 1.8 %), <em>RNASEH2A</em> (<em>n</em> = 7, 4.2 %), <em>SAMHD1</em> (<em>n</em> = 25, 15.0 %), <em>ADAR</em> (<em>n</em> = 34, 20.4 %), <em>IFIH1</em> (<em>n</em> = 19, 11.4 %), and <em>RNU7–1</em> (n = 3, 1.8 %). The median age of systemic onset was 0.15 years [IQR = 0.67 years; median range by genotype: 0 (<em>TREX1</em>) - 0.62 (<em>ADAR)</em> years], while the median neurological onset was 0.33 years [IQR = 0.82 years; median range by genotype: 0.08 (<em>TREX1</em>) - 0.90 (<em>ADAR)</em> year].</div><div>The most common early systemic complications were gastrointestinal, including dysphagia or feeding intolerance (<em>n</em> = 124) and liver abnormalities (<em>n</em> = 67). Among postnatal complications, thrombocytopenia appeared earliest (<em>n</em> = 29, median 0.06 years). Tone abnormalities (axial hypotonia: <em>n</em> = 145, 86.8 %; dystonia: <em>n</em> = 123, 73.7 %), irritability (<em>n</em> = 115, 68.9 %), and gross motor delay (<em>n</em> = 112, 7.1 %) emerged as the most prevalent neurological symptoms. Previously published case reports demonstrated similar patterns.</div><div>The median AGS score for the entire cohort was 4 (IQR = 7). The most severe neurologic phenotype occurred in <em>TREX1-</em>related AGS (<em>n</em> = 19, median AGS severity score 2, IQR = 2). Time to feeding tube placement, chilblains, early gross motor delay, early cognitive delay, and motor regression were significantly associated with genotype (Fleming-Harrington log-rank: <em>p</em> = 0.0002, <em>p</em> < 0.0001, <em>p</em> = 0.0038, p < 0.0001, <em>p</em> = 0.0001, respectively). Microcephaly, feeding tube placement, and seizures were associated with lower AGS scores (All: Wilcoxon rank sum test, p < 0.0001).</div><div>Among the qualifying case reports (<em
目标阿卡迪-古蒂耶尔综合征(AGS)是一种罕见的遗传性干扰素病,伴有多种多系统并发症。我们对该病的纵向、系统性疾病负担的了解存在严重不足,而诊断延迟又使这一问题变得更加复杂。为了满足这一需求,我们使用从现有医疗记录中提取的真实世界数据来描述纵向疾病负担的特征。方法纳入所有参加髓鞘疾病生物储存库项目(MDBP)、经基因证实患有 AGS 的受试者(n = 167)。根据医疗记录,收集了受试者的人口统计学特征、发病年龄和疾病并发症等信息。此外,还收集了已发表的 AGS 病例(2007-2022 年;n = 129)的个人数据信息。结果自然病史队列中的基因型频率为 TREX1(n = 26,15.6%)、RNASEH2B(n = 50,29.9%)、RNASEH2C(n = 3,1.8%)、RNASEH2A(n = 7,4.2%)、SAMHD1(n = 25,15.0%)、ADAR(n = 34,20.4%)、IFIH1(n = 19,11.4%)和 RNU7-1(n = 3,1.8%)。全身发病的中位年龄为 0.15 岁 [IQR = 0.67 岁;不同基因型的中位范围:0(TREX1)- 0.62(ADAR)岁],而神经系统发病的中位年龄为 0.33 岁 [IQR = 0.最常见的早期全身并发症是胃肠道并发症,包括吞咽困难或进食不耐受(124 例)和肝功能异常(67 例)。在产后并发症中,血小板减少最早出现(29 例,中位数为 0.06 年)。音调异常(轴性肌张力低下:145 人,占 86.8%;肌张力障碍:123 人,占 73.7%)、易激惹(115 人,占 68.9%)和大运动迟缓(112 人,占 7.1%)是最常见的神经系统症状。此前发表的病例报告也显示了类似的模式。整个队列的 AGS 评分中位数为 4(IQR = 7)。最严重的神经系统表型出现在与 TREX1 相关的 AGS 中(n = 19,中位 AGS 严重度评分为 2,IQR = 2)。安置喂食管的时间、皲裂、早期粗大运动迟缓、早期认知迟缓和运动退行与基因型显著相关(Fleming-Harrington log-rank:分别为 p = 0.0002、p < 0.0001、p = 0.0038、p < 0.0001、p = 0.0001)。在合格的病例报告(n = 129)中,张力异常是最常见的疾病特征,96 例病例中有 37 例(38.结论AGS是一种多器官系统功能障碍的异质性疾病,在整个临床过程中会不断加重,从而对神经系统和神经系统外的疾病产生深远的影响。大多数病例的全身症状先于神经系统疾病特征。一岁前发病、小头畸形、安置喂食管和癫痫发作与较差的神经系统预后有关。这项工作将为循证临床监测指南和临床试验设计提供依据。
{"title":"Systemic complications of Aicardi Goutières syndrome using real-world data","authors":"Isabella Peixoto de Barcelos ,&nbsp;Amanda K. Jan ,&nbsp;Nicholson Modesti ,&nbsp;Sarah Woidill ,&nbsp;Francesco Gavazzi ,&nbsp;David Isaacs ,&nbsp;Russell D'Aiello ,&nbsp;Anjana Sevagamoorthy ,&nbsp;Lauren Charlton ,&nbsp;Amy Pizzino ,&nbsp;Johanna Schmidt ,&nbsp;Keith van Haren ,&nbsp;Stephanie Keller ,&nbsp;Florian Eichler ,&nbsp;Lisa T. Emrick ,&nbsp;Jamie L. Fraser ,&nbsp;Justine Shults ,&nbsp;Adeline Vanderver ,&nbsp;Laura A. Adang","doi":"10.1016/j.ymgme.2024.108578","DOIUrl":"10.1016/j.ymgme.2024.108578","url":null,"abstract":"&lt;div&gt;&lt;h3&gt;Objective&lt;/h3&gt;&lt;div&gt;Aicardi Goutières Syndrome (AGS) is a rare genetic interferonopathy associated with diverse multisystemic complications. A critical gap exists in our understanding of its longitudinal, systemic disease burden, complicated by delayed diagnosis. To address this need, real-world data extracted from existing medical records were used to characterize the longitudinal disease burden.&lt;/div&gt;&lt;/div&gt;&lt;div&gt;&lt;h3&gt;Methods&lt;/h3&gt;&lt;div&gt;All subjects (&lt;em&gt;n&lt;/em&gt; = 167) with genetically confirmed AGS enrolled in the Myelin Disorders Biorepository Project (MDBP) were included. As available in medical records, information was collected on subject demographics, age of onset, and disease complications. Information from published cases of AGS (2007–2022; &lt;em&gt;n&lt;/em&gt; = 129) with individual-level data was also collected. Neurologic severity at the last available encounter was determined by retrospectively assigning the AGS Severity Scale [severe (0–3), moderate (4–8), and mild (9–11)].&lt;/div&gt;&lt;/div&gt;&lt;div&gt;&lt;h3&gt;Results&lt;/h3&gt;&lt;div&gt;The genotype frequency in the natural history cohort was &lt;em&gt;TREX1&lt;/em&gt; (&lt;em&gt;n&lt;/em&gt; = 26, 15.6 %), &lt;em&gt;RNASEH2B&lt;/em&gt; (&lt;em&gt;n&lt;/em&gt; = 50, 29.9 %), &lt;em&gt;RNASEH2C&lt;/em&gt; (&lt;em&gt;n&lt;/em&gt; = 3, 1.8 %), &lt;em&gt;RNASEH2A&lt;/em&gt; (&lt;em&gt;n&lt;/em&gt; = 7, 4.2 %), &lt;em&gt;SAMHD1&lt;/em&gt; (&lt;em&gt;n&lt;/em&gt; = 25, 15.0 %), &lt;em&gt;ADAR&lt;/em&gt; (&lt;em&gt;n&lt;/em&gt; = 34, 20.4 %), &lt;em&gt;IFIH1&lt;/em&gt; (&lt;em&gt;n&lt;/em&gt; = 19, 11.4 %), and &lt;em&gt;RNU7–1&lt;/em&gt; (n = 3, 1.8 %). The median age of systemic onset was 0.15 years [IQR = 0.67 years; median range by genotype: 0 (&lt;em&gt;TREX1&lt;/em&gt;) - 0.62 (&lt;em&gt;ADAR)&lt;/em&gt; years], while the median neurological onset was 0.33 years [IQR = 0.82 years; median range by genotype: 0.08 (&lt;em&gt;TREX1&lt;/em&gt;) - 0.90 (&lt;em&gt;ADAR)&lt;/em&gt; year].&lt;/div&gt;&lt;div&gt;The most common early systemic complications were gastrointestinal, including dysphagia or feeding intolerance (&lt;em&gt;n&lt;/em&gt; = 124) and liver abnormalities (&lt;em&gt;n&lt;/em&gt; = 67). Among postnatal complications, thrombocytopenia appeared earliest (&lt;em&gt;n&lt;/em&gt; = 29, median 0.06 years). Tone abnormalities (axial hypotonia: &lt;em&gt;n&lt;/em&gt; = 145, 86.8 %; dystonia: &lt;em&gt;n&lt;/em&gt; = 123, 73.7 %), irritability (&lt;em&gt;n&lt;/em&gt; = 115, 68.9 %), and gross motor delay (&lt;em&gt;n&lt;/em&gt; = 112, 7.1 %) emerged as the most prevalent neurological symptoms. Previously published case reports demonstrated similar patterns.&lt;/div&gt;&lt;div&gt;The median AGS score for the entire cohort was 4 (IQR = 7). The most severe neurologic phenotype occurred in &lt;em&gt;TREX1-&lt;/em&gt;related AGS (&lt;em&gt;n&lt;/em&gt; = 19, median AGS severity score 2, IQR = 2). Time to feeding tube placement, chilblains, early gross motor delay, early cognitive delay, and motor regression were significantly associated with genotype (Fleming-Harrington log-rank: &lt;em&gt;p&lt;/em&gt; = 0.0002, &lt;em&gt;p&lt;/em&gt; &lt; 0.0001, &lt;em&gt;p&lt;/em&gt; = 0.0038, p &lt; 0.0001, &lt;em&gt;p&lt;/em&gt; = 0.0001, respectively). Microcephaly, feeding tube placement, and seizures were associated with lower AGS scores (All: Wilcoxon rank sum test, p &lt; 0.0001).&lt;/div&gt;&lt;div&gt;Among the qualifying case reports (&lt;em","PeriodicalId":18937,"journal":{"name":"Molecular genetics and metabolism","volume":"143 1","pages":"Article 108578"},"PeriodicalIF":3.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142323196","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Base editing of the GLB1 gene is therapeutic in GM1 gangliosidosis patient-derived cells 碱基编辑 GLB1 基因对 GM1 神经节苷脂病患者衍生细胞有治疗作用
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108568
Allisandra K. Rha , Shih-Hsin Kan , Perla Andrade-Heckman , Chloe L. Christensen , Jerry F. Harb , Raymond Y. Wang

GM1 gangliosidosis is an autosomal recessive neurodegenerative lysosomal storage disease caused by pathogenic variants in the GLB1 gene, limiting the production of active lysosomal β-galactosidase. Phenotypic heterogeneity is due in part to variant type, location within GLB1, and the amount of residual enzyme activity; in the most severe form, death occurs in infancy. With no FDA approved therapeutics, development of efficacious strategies for the disease is pivotal. CRISPR/Cas based approaches have revolutionized precision medicine and have been indispensable to the development of treatments for several monogenic disorders with bespoke strategies central to current research pipelines. We used CRISPR/Cas-adenine base editing to correct the GLB1 c.380G>A (p.Cys127Tyr) variant in patient-derived dermal fibroblasts compound heterozygous with the GLB1 c.481T>G (p.Trp161Gly) pathogenic variant. Nucleofection of plasmids encoding the target sgRNA and ABEmax restored the canonical guanine (32.2 ± 2.2 % of the target allele) and synthesis of active β-galactosidase. Analysis of cellular markers of pathology revealed normalization of both primary glycoconjugate storage and lysosomal pathology. Furthermore, analysis of off-target sites nominated by the in silico tools Cas-OFFinder and/or CRISTA revealed no significant editing or indels. This study supports the use of CRISPR/Cas-based approaches for the treatment of GM1 gangliosidosis, and provides foundational data for future translational studies.

GM1神经节苷脂病是一种常染色体隐性神经退行性溶酶体贮积病,由GLB1基因中的致病变体引起,限制了活性溶酶体β-半乳糖苷酶的产生。表型的异质性部分是由于变异类型、GLB1 基因的位置和残余酶活性的数量造成的;在最严重的情况下,患者会在婴儿期死亡。由于没有获得美国食品及药物管理局批准的治疗方法,开发治疗该疾病的有效策略至关重要。基于CRISPR/Cas的方法为精准医疗带来了革命性的变化,对于开发几种单基因疾病的治疗方法是不可或缺的,其中定制策略是目前研究管线的核心。我们利用CRISPR/Cas腺嘌呤碱基编辑技术纠正了GLB1 c.380G>A(p.Cys127Tyr)变体,该变体存在于与GLB1 c.481T>G(p.Trp161Gly)致病变体复合杂合的患者真皮成纤维细胞中。对编码目标 sgRNA 和 ABEmax 的质粒进行核感染,可恢复典型鸟嘌呤(目标等位基因的 32.2 ± 2.2 %)和活性 β-半乳糖苷酶的合成。对细胞病理学标志物的分析表明,原生糖苷酸贮存和溶酶体病理学均恢复正常。此外,通过硅学工具 Cas-OFFinder 和/或 CRISTA 对指定的脱靶位点进行分析,没有发现明显的编辑或嵌合。这项研究支持使用基于CRISPR/Cas的方法治疗GM1神经节苷脂病,并为未来的转化研究提供了基础数据。
{"title":"Base editing of the GLB1 gene is therapeutic in GM1 gangliosidosis patient-derived cells","authors":"Allisandra K. Rha ,&nbsp;Shih-Hsin Kan ,&nbsp;Perla Andrade-Heckman ,&nbsp;Chloe L. Christensen ,&nbsp;Jerry F. Harb ,&nbsp;Raymond Y. Wang","doi":"10.1016/j.ymgme.2024.108568","DOIUrl":"10.1016/j.ymgme.2024.108568","url":null,"abstract":"<div><p>GM1 gangliosidosis is an autosomal recessive neurodegenerative lysosomal storage disease caused by pathogenic variants in the <em>GLB1</em> gene, limiting the production of active lysosomal β-galactosidase. Phenotypic heterogeneity is due in part to variant type, location within <em>GLB1</em>, and the amount of residual enzyme activity; in the most severe form, death occurs in infancy. With no FDA approved therapeutics, development of efficacious strategies for the disease is pivotal. CRISPR/Cas based approaches have revolutionized precision medicine and have been indispensable to the development of treatments for several monogenic disorders with bespoke strategies central to current research pipelines. We used CRISPR/Cas-adenine base editing to correct the <em>GLB1</em> c.380G&gt;A (p.Cys127Tyr) variant in patient-derived dermal fibroblasts compound heterozygous with the <em>GLB1</em> c.481T&gt;G (p.Trp161Gly) pathogenic variant. Nucleofection of plasmids encoding the target sgRNA and ABEmax restored the canonical guanine (32.2 ± 2.2 % of the target allele) and synthesis of active β-galactosidase. Analysis of cellular markers of pathology revealed normalization of both primary glycoconjugate storage and lysosomal pathology. Furthermore, analysis of off-target sites nominated by the <em>in silico</em> tools Cas-OFFinder and/or CRISTA revealed no significant editing or indels. This study supports the use of CRISPR/Cas-based approaches for the treatment of GM1 gangliosidosis, and provides foundational data for future translational studies.</p></div>","PeriodicalId":18937,"journal":{"name":"Molecular genetics and metabolism","volume":"143 1","pages":"Article 108568"},"PeriodicalIF":3.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1096719224004529/pdfft?md5=caf784a9b2901b28fddc7475115c9100&pid=1-s2.0-S1096719224004529-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142274475","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Standardized emergency protocols to improve the management of patients with suspected or confirmed inherited metabolic disorders (IMDs): An initiative of the French IMDs Healthcare Network for Rare Diseases 标准化急救协议,改善对疑似或确诊遗传性代谢紊乱(IMDs)患者的管理:法国IMDs罕见病医疗网络的一项倡议
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108579
Juliette Bouchereau , Camille Wicker , Karine Mention , Clothilde Marbach , Jeremy Do Cao , Claire-Marine Berat , Marianne Jaroussie , Aline Cano , Magali Gorce , Alexa Garros , Alice Kuster , Célia Hoebeke , Claire Mayer , Anaïs Brassier , Laurent Gouya , Cécile Schrimpf , Jean-Baptiste Arnoux , Manuel Schiff , Cécile Acquaviva-Bourdain , Jean-François Benoist , Pascale de Lonlay

Objectives

Patients with inherited metabolic disorders (IMDs) may require emergency hospital care to prevent life-threatening situations such as metabolic decompensation. To date, over one thousand different rare IMDs have been identified, which means that healthcare professionals (HCPs) initiating emergency treatment may not be familiar with these conditions. The objective of this initiative was to provide HCPs with practical guidance for the acute management of children and adults with IMDs who need emergency care, regardless of the underlying reason.

Methods

We outline how a multidisciplinary working group from the French IMDs Healthcare Network for Rare Diseases, known as G2M, has created concise and standardized protocols _each consisting of a single double-sided A4 sheet _ focused on a specific disease, a group of diseases, or a particular symptom. Prior to validation, these protocols were reviewed by all French reference and competence centres for IMDs, as well as by medical experts from other specialities when necessary, physicians from emergency and intensive care units, and representatives from patient associations.

Results and conclusion

In total, 51 emergency protocols containing essential information have been developed and provided to affected patients. All the emergency protocols are freely available in both French and English at https://www.filiere-g2m.fr/urgences. These standardized protocols aim to enhance the emergency care of patients without delay, while also assisting HCPs by increasing their confidence and efficiency, minimizing the risk of dosage errors when administering specialized treatments, saving time, and reducing the number of phone calls to metabolic medicine specialists on night duty. The protocols are scheduled for annual review to facilitate further improvements based on feedback from HCPs and patients, as well as to accommodate any changes in management practices as they evolve.

目的患有遗传性代谢紊乱(IMD)的患者可能需要在医院接受急诊治疗,以防止出现代谢失调等危及生命的情况。迄今为止,已发现一千多种不同的罕见遗传性代谢紊乱病,这意味着启动紧急治疗的医疗保健专业人员(HCP)可能并不熟悉这些病症。我们概述了法国罕见疾病 IMDs 医疗保健网络(简称 G2M)的一个多学科工作组是如何创建简明而标准化的协议(每个协议由一张双面 A4 纸组成)的,该协议侧重于一种特定疾病、一组疾病或一种特定症状。在验证之前,法国所有的 IMD 参考资料和能力中心,以及必要时其他专业的医学专家、急诊室和重症监护室的医生以及患者协会的代表都对这些协议进行了审查。所有急救协议的法文版和英文版均可在 https://www.filiere-g2m.fr/urgences 免费获取。这些标准化规程旨在加强对患者的紧急救治,避免延误,同时还能增强医护人员的信心,提高他们的工作效率,最大限度地降低在实施特殊治疗时出现剂量错误的风险,节省时间,并减少夜间值班的代谢医学专家的电话次数。该协议计划每年进行一次审查,以便根据主治医生和患者的反馈意见进一步改进,并适应管理实践中的任何变化。
{"title":"Standardized emergency protocols to improve the management of patients with suspected or confirmed inherited metabolic disorders (IMDs): An initiative of the French IMDs Healthcare Network for Rare Diseases","authors":"Juliette Bouchereau ,&nbsp;Camille Wicker ,&nbsp;Karine Mention ,&nbsp;Clothilde Marbach ,&nbsp;Jeremy Do Cao ,&nbsp;Claire-Marine Berat ,&nbsp;Marianne Jaroussie ,&nbsp;Aline Cano ,&nbsp;Magali Gorce ,&nbsp;Alexa Garros ,&nbsp;Alice Kuster ,&nbsp;Célia Hoebeke ,&nbsp;Claire Mayer ,&nbsp;Anaïs Brassier ,&nbsp;Laurent Gouya ,&nbsp;Cécile Schrimpf ,&nbsp;Jean-Baptiste Arnoux ,&nbsp;Manuel Schiff ,&nbsp;Cécile Acquaviva-Bourdain ,&nbsp;Jean-François Benoist ,&nbsp;Pascale de Lonlay","doi":"10.1016/j.ymgme.2024.108579","DOIUrl":"10.1016/j.ymgme.2024.108579","url":null,"abstract":"<div><h3>Objectives</h3><p>Patients with inherited metabolic disorders (IMDs) may require emergency hospital care to prevent life-threatening situations such as metabolic decompensation. To date, over one thousand different rare IMDs have been identified, which means that healthcare professionals (HCPs) initiating emergency treatment may not be familiar with these conditions. The objective of this initiative was to provide HCPs with practical guidance for the acute management of children and adults with IMDs who need emergency care, regardless of the underlying reason.</p></div><div><h3>Methods</h3><p>We outline how a multidisciplinary working group from the French IMDs Healthcare Network for Rare Diseases, known as G2M, has created concise and standardized protocols _each consisting of a single double-sided A4 sheet _ focused on a specific disease, a group of diseases, or a particular symptom. Prior to validation, these protocols were reviewed by all French reference and competence centres for IMDs, as well as by medical experts from other specialities when necessary, physicians from emergency and intensive care units, and representatives from patient associations.</p></div><div><h3>Results and conclusion</h3><p>In total, 51 emergency protocols containing essential information have been developed and provided to affected patients. All the emergency protocols are freely available in both French and English at <span><span>https://www.filiere-g2m.fr/urgences</span><svg><path></path></svg></span>. These standardized protocols aim to enhance the emergency care of patients without delay, while also assisting HCPs by increasing their confidence and efficiency, minimizing the risk of dosage errors when administering specialized treatments, saving time, and reducing the number of phone calls to metabolic medicine specialists on night duty. The protocols are scheduled for annual review to facilitate further improvements based on feedback from HCPs and patients, as well as to accommodate any changes in management practices as they evolve.</p></div>","PeriodicalId":18937,"journal":{"name":"Molecular genetics and metabolism","volume":"143 1","pages":"Article 108579"},"PeriodicalIF":3.7,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142274476","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Maple syrup urine disease diagnosis in Brazilian patients by massive parallel sequencing 通过大规模平行测序诊断巴西患者的枫糖尿病
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108569
Rafael Hencke Tresbach , Fernanda Sperb-Ludwig , Rodrigo Ligabue-Braun , Fernanda Hendges de Bitencourt , Tássia Tonon , Carolina Fischinger Moura de Souza , Fabiano de Oliveira Poswar , Maria Efigênia de Queiroz Leite , Tatiana Amorim , Gilda Porta , João Seda Neto , Irene Kazumi Miura , Carlos Eduardo Steiner , Ana Maria Martins , André Luiz Santos Pessoa , Erlane Marques Ribeiro , Ida Vanessa Doederlein Schwartz

Biallelic pathogenic variants cause maple syrup urine disease (MSUD) in one of the branched-chain α-keto acid dehydrogenase (BCKDH) complex genes (BCKDHA, BCKDHB, DBT, DLD, and PPM1K) leading to the accumulation of leucine, isoleucine, and valine. This study aimed to perform a molecular diagnosis of Brazilian patients with MSUD using gene panels and massive parallel sequencing. Eighteen Brazilian patients with a biochemical diagnosis of MSUD were analyzed by massive parallel sequencing in the Ion PGM Torrent Server using a gene panel with the BCKDHA, BCKDHB, and DBT genes. The American College of Medical Genetics and Genomics guidelines were used to determine variant pathogenicity. Thirteen patients had both variants found by massive parallel sequencing, whereas 3 patients had only one variant found. In 2 patients, the variants were not found by this analysis. These 5 patients required additional Sanger sequencing to confirm their genotype. Twenty-five pathogenic variants were identified in the 3 MSUD-related genes (BCKDHA, BCKDHB, and DBT). Most variants were present in the BCKDHB gene, and no common variants were found. Nine novel variants were observed: c.922 A > G, c.964C > A, and c.1237 T > C in the BCKDHA gene; and c.80_90dup, c.384delA, c.478 A > T, c.528C > G, c.977 T > C, and c.1039-2 A > G in the BCKDHB gene. All novel variants were classified as pathogenic. Molecular modeling of the novel variants indicated that the binding of monomers was affected in the BCKDH complex tetramer, which could lead to a change in the stability and activity of the enzyme. Massive parallel sequencing with targeted gene panels seems to be a cost-effective method that can provide a molecular diagnosis of MSUD.

支链α-酮酸脱氢酶(BCKDH)复合基因(BCKDHA、BCKDHB、DBT、DLD 和 PPM1K)中的一个基因的双叶致病变体会导致亮氨酸、异亮氨酸和缬氨酸的积累,从而引起枫糖尿病(MSUD)。本研究旨在利用基因组和大规模平行测序技术对巴西的 MSUD 患者进行分子诊断。研究人员在 Ion PGM Torrent 服务器上使用 BCKDHA、BCKDHB 和 DBT 基因组成的基因面板,对 18 名生化诊断为 MSUD 的巴西患者进行了大规模平行测序分析。美国医学遗传学和基因组学学院指南用于确定变体的致病性。有13名患者通过大规模平行测序发现了两个变异体,而有3名患者只发现了一个变异体。有 2 名患者的变异体没有被这项分析发现。这 5 名患者需要额外的 Sanger 测序来确认其基因型。在 3 个 MSUD 相关基因(BCKDHA、BCKDHB 和 DBT)中发现了 25 个致病变体。大多数变异出现在 BCKDHB 基因中,没有发现常见变异。在 BCKDHA 基因中发现了 9 个新变异:c.922 A >G、c.964C >A、c.1237 T >C;在 BCKDHB 基因中发现了 c.80_90dup、c.384delA、c.478 A >T、c.528C >G、c.977 T >C、c.1039-2 A >G。所有新型变异都被归类为致病性变异。新型变异体的分子建模表明,BCKDH 复合物四聚体中单体的结合受到了影响,这可能会导致酶的稳定性和活性发生变化。使用靶向基因组进行大规模平行测序似乎是一种经济有效的方法,可对 MSUD 进行分子诊断。
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引用次数: 0
Genotype–phenotype findings in patients with mucopolysaccharidosis II from the Hunter Outcome Survey 亨特结果调查得出的黏多醣症II患者基因型-表型结果
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108576
Joseph Muenzer , Hernan Amartino , Barbara K. Burton , Maurizio Scarpa , Anna Tylki-Szymańska , Jennifer Audi , Jaco Botha , Daniel Fertek , David Merberg , Madhusudan Natarajan , David A.H. Whiteman , Roberto Giugliani

Purpose

This study investigated the relationship between mucopolysaccharidosis II (MPS II) iduronate-2-sulfatase gene (IDS) variants and phenotypic characteristics, particularly cognitive impairment, using data from the Hunter Outcome Survey (HOS) registry.

Methods

HOS data for male patients (n = 650) aged ≥5 years at latest cognitive assessment with available genetic data were analyzed. Predefined genotype categories were used to classify IDS variants and report phenotypic characteristics by genotype.

Results

At their latest cognitive assessment, 411 (63.2%) of 650 patients had cognitive impairment. Missense variants were the most common MPS II genotype, with about equal frequency for patients with and patients without cognitive impairment. Complete deletions/large rearrangements were associated with cognitive impairment. Cognitive impairment and behavioral issues were most common, and height and weight abnormalities most apparent, in patients with large IDS structural changes. Broadly, missense variants NM-000202.8:c.998C>T p.(Ser333Leu), NM-000202.8:c.1402C>T p.(Arg468Trp), NM-000202.8:c.1403G>A p.(Arg468Gln) and NM-000202.8:c.262C>T p.(Arg88Cys), and splice site variant NM-000202.8:c.257C>T p.(Pro86Leu), were associated with cognitive impairment, and variants NM-000202.8:c.253G>A p.(Ala85Thr), NM-000202.8:c.187 A>G p.(Asn63Asp), NM-000202.8:c.1037C>T p.(Ala346Val), NM-000202.8:c.182C>T p.(Ser61Phe) and NM-000202.8:c.1122C>T were not.

Conclusion

This analysis contributes toward the understanding of MPS II genotype–phenotype relationships, confirming and expanding on existing findings in a large, geographically diverse population.

本研究利用亨特结果调查(HOS)登记数据,研究了粘多糖病II(MPS II)淀粉酸-2-硫酸酯酶基因(IDS)变异与表型特征(尤其是认知障碍)之间的关系。
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引用次数: 0
CIC variants and folinic acid-responsive seizures CIC变体和亚叶酸反应性癫痫发作
IF 3.7 2区 生物学 Q2 ENDOCRINOLOGY & METABOLISM Pub Date : 2024-09-01 DOI: 10.1016/j.ymgme.2024.108574
Meshal Almutair , Farah Thabet , Khalid Hundallah , Brahim Tabarki
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引用次数: 0
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