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Candidozyma auris Reported in Scotland: a Call for Vigilance Amid Global Rise. 在苏格兰报道的耳念珠菌:在全球上升中警惕的呼吁。
IF 2.9 3区 生物学 Q2 MYCOLOGY Pub Date : 2026-01-20 DOI: 10.1007/s11046-026-01051-y
M H Howe, K L Bartie, W G Mackay, T Inkster, S Cairns, R Kean, A M Bal, G Ramage

Candidozyma auris (formerly Candida auris) is an emerging pathogenic yeast associated with healthcare outbreaks worldwide. Despite increasing reports across Europe, no published data have previously described cases in Scotland. Here, we report the first detections of C. auris in Scotland, as submitted to ARHAI Scotland. Eight cases (seven colonisations, one infection) were identified to date across four NHS Scotland boards, all linked to repatriation or recent hospitalisation abroad. To contextualise these findings, we reviewed publicly available literature and surveillance data for Western and Northern Europe, identifying considerable variation in case numbers and highlighting Scotland's position among countries with the lowest reported cases. All Scottish cases were imported, underscoring the importance of targeted screening of patients with international healthcare exposure. These findings inform preparedness planning and support recommendations for strengthened surveillance to prevent onward transmission.

耳念珠菌(原耳念珠菌)是一种新兴的致病性酵母菌,与全球卫生保健暴发有关。尽管欧洲各地的报告越来越多,但此前没有公布的数据描述苏格兰的病例。在这里,我们报告首次检测到的C. auris在苏格兰,提交给ARHAI苏格兰。迄今为止,在苏格兰四个NHS委员会中发现了8例病例(7例殖民,1例感染),所有病例都与遣返或最近在国外住院有关。为了了解这些发现的背景,我们回顾了西欧和北欧的公开文献和监测数据,发现病例数存在相当大的差异,并强调了苏格兰在报告病例最少的国家中的地位。所有苏格兰病例都是输入性的,强调了有针对性地筛查具有国际医疗保健暴露的患者的重要性。这些发现为防范规划提供了信息,并为加强监测以防止进一步传播提供了建议。
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引用次数: 0
Comparison of the Efficacy and Safety of Different Antifungal Regimen Combinations in Non-HIV and Non-transplant Cryptococcal Meningitis Patients with High Cryptococcal Count. 不同抗真菌方案联合治疗高隐球菌计数非hiv和非移植性隐球菌脑膜炎患者的疗效和安全性比较。
IF 2.9 3区 生物学 Q2 MYCOLOGY Pub Date : 2026-01-14 DOI: 10.1007/s11046-025-01044-3
Junyu Liu, Dongcheng Li, Jia Liu, Yaxin Lu, Jiayin Liang, Xiaohong Su, Zheqi Li, Zifeng Liu, Ying Jiang, Fuhua Peng

Aim: To evaluate the efficacy and safety of four antifungal regimens in treating non-HIV and non-transplant (NHNT) cryptococcal meningitis (CM) patients with high cryptococcal count (≥ 10,000/ml).

Methods: A retrospective analysis was conducted on 135 NHNT CM patients with high cryptococcal count who were admitted to the Third Affiliated Hospital of Sun Yat-sen University from 2008 to 2023. Patients were categorized into four groups based on the antifungal regimen used during the induction period (Group1: Amphotericin B-deoxycholate (AmB-d) + 5-flucytosine (5-FC) + Voriconazole (VOR); Group2: AmB-d + 5-FC + Fluconazole (FLU); Group3: AmB-d + 5-FC; Group4: 5-FC + FLU). Treatment outcomes were assessed by comparing responses at 10 weeks.

Results: Baseline characteristics were comparable across the four groups. After 2 weeks of follow-up, the positive rate of Cryptococcus culture in cerebrospinal fluid (CSF) of Group1 (1/30; 3.3%) was significantly lower (p < 0.05) than that of Group2 and Group4 (Group2: 11/45; 24.4%; Group4: 22/43; 51.2%); the frequency of anemia in Group1(24/30; 80.0%) was significantly higher (p < 0.05) than that of Group3 and Group4 (Group3: 6/15; 40.0%; Group4: 20/43; 46.5%); and the frequency of renal impairment in Group1 (20/30; 66.7%) was significantly higher (p < 0.05) than that of Group2 and Group4 (Group2: 16/45; 35.6%; Group4: 4/43; 9.3%). Multivariate analysis showed significant associations between treatment groups and the 10-week unsuccessful outcome, with Group 1 having the lowest odds ratio (OR 0.04, 95% CI 0.01-0.22, p < 0.001) when compared to the reference group (Group 3, AmB-d + 5-FC).

Conclusions: Our observations suggested potential benefits of the AmB-d + 5-FC + VOR regimen over AmB-d + 5-FC and 5-FC + FLU for NHNT CM patients. However, clinicians must closely monitor potential side effects, particularly anemia and renal impairment, associated with this regimen.

目的:评价4种抗真菌方案治疗隐球菌计数高(≥10,000/ml)的非hiv和非移植(NHNT)隐球菌性脑膜炎(CM)患者的有效性和安全性。方法:对2008 ~ 2023年中山大学附属第三医院收治的135例隐球菌高计数NHNT CM患者进行回顾性分析。根据诱导期使用的抗真菌方案将患者分为四组(第一组:两性霉素b -脱氧胆酸酯(AmB-d) + 5-氟胞嘧啶(5-FC) +伏立康唑(VOR);第二组:AmB-d + 5-FC +氟康唑(FLU);组3:AmB-d + 5-FC;第4组:5-FC + FLU)。通过比较10周时的反应来评估治疗结果。结果:四组患者的基线特征具有可比性。随访2周后,第1组脑脊液(CSF)隐球菌培养阳性率(1/30;3.3%)显著降低(p)。结论:我们的观察表明,对于NHNT CM患者,AmB-d + 5-FC + VOR方案比AmB-d + 5-FC和5-FC + FLU方案有潜在的益处。然而,临床医生必须密切监测与该方案相关的潜在副作用,特别是贫血和肾损害。
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引用次数: 0
Correction: Assessing the Validity and Impact of Remote Digital Image Reading in Fungal Diagnostics. 修正:评估真菌诊断中远程数字图像读取的有效性和影响。
IF 2.9 3区 生物学 Q2 MYCOLOGY Pub Date : 2026-01-13 DOI: 10.1007/s11046-025-01049-y
Vilhelmina Lundgren, Özlem Dogan, Anna Ekwall-Larson, Christine Stenström, Erja Chryssanthou, Maria Guglielmeti, Ylva Närström, Patrik Dinnétz, Silvia Botero-Kleiven, Volkan Özenci
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引用次数: 0
Concurrent Administration of Triazoles with Chemotherapeutic and/or Immunosuppressant Agents Known to Have Moderate-to-Severe Drug-Drug Interactions in Patients with Hematologic Malignancies Hospitalized for Invasive Aspergillosis. 因侵袭性曲霉病住院的血液恶性肿瘤患者,三唑类药物与已知有中度至重度药物相互作用的化疗和/或免疫抑制剂同时应用
IF 2.9 3区 生物学 Q2 MYCOLOGY Pub Date : 2026-01-13 DOI: 10.1007/s11046-025-01043-4
Thomas J Walsh, Craig I Coleman, Melissa D Johnson, Belinda Lovelace, Barbara D Alexander

Background: Triazoles are widely used for treatment and prevention of invasive aspergillosis (IA) but can cause serious drug-drug interactions (DDIs) with chemotherapeutic (CT) and immunosuppressant (IS) agents via CYP3A4 inhibition. The frequency of triazole-CT or IS concurrent administration in hematologic malignancies (HM) patients newly admitted with IA is largely unknown.

Methods: We studied US IQVIA claims including adults with ≥ 1 claim for an inpatient stay with a diagnosis code for IA from October 1, 2015-November 30, 2022 and evidence of systemic antifungal therapy for ≥ 3 days during the hospitalization. The cohort was limited to patients with ≥ 1 HM diagnosis code within 6 months prior to IA admission. Utilization of triazoles with CT and/or ISs known to have moderate-to-severe pharmacokinetic (PK) interactions was described.

Results: Triazoles, predominantly isavuconazole (61.0%) and voriconazole (53.6%), were administered in 97.2% of 317 patients with IA. Of these, 241 (78.2%) received an interacting CT and/or IS. Potentially interacting agents administered with a triazole included corticosteroids (70.8%), calcineurin or mammalian target of rapamycin (mTOR) inhibitors (25.0%) (84.4% tacrolimus), alkylating agents (14.0%) (76.7% cyclophosphamide), venetoclax (9.7%), anthracyclines (6.2%), and vincristine (5.8%).

Conclusions: Concurrent administration of triazole with potential PK interactions with CT or IS agents occurred in most HM patients admitted for IA. Choosing alternative antifungals, therapeutic drug monitoring of triazoles or selective ISs, and dosage adjustment of CT/IS agents may mitigate the risk of adverse DDIs. New antifungal agents without serious DDIs with CT and/or IS agents are needed for treatment of IA to reduce the risk of serious adverse events.

背景:三唑类药物被广泛用于治疗和预防侵袭性曲霉病(IA),但可能通过抑制CYP3A4与化疗(CT)和免疫抑制剂(IS)药物产生严重的药物-药物相互作用(ddi)。在新入院的恶性血液病(HM)患者中,三唑- ct或IS同时使用的频率在很大程度上是未知的。方法:我们研究了美国IQVIA索赔,包括2015年10月1日至2022年11月30日期间诊断代码为IA的住院患者≥1份索赔的成年人,以及住院期间接受系统性抗真菌治疗≥3天的证据。该队列限于入住IA前6个月内诊断代码≥1 HM的患者。对已知有中度至重度药代动力学(PK)相互作用的CT和/或ISs使用三唑进行了描述。结果:317例IA患者中,97.2%的患者使用三唑类药物,以异戊康唑(61.0%)和伏立康唑(53.6%)为主。其中,241例(78.2%)接受了CT和/或IS联合检查。与三唑联合使用的潜在相互作用药物包括皮质类固醇(70.8%)、钙调磷酸酶或哺乳动物雷帕霉素靶蛋白(mTOR)抑制剂(25.0%)(他克莫司84.4%)、烷基化剂(14.0%)(环磷酰胺76.7%)、venetoclax(9.7%)、蒽环类药物(6.2%)和长春新碱(5.8%)。结论:在大多数因IA入院的HM患者中,同时给药三唑可能与CT或IS药物发生PK相互作用。选择替代抗真菌药物,监测三唑或选择性ISs治疗药物,以及调整CT/IS药物的剂量可减轻ddi不良反应的风险。治疗IA需要新的抗真菌药物,不需要与CT和/或IS药物一起出现严重的ddi,以降低严重不良事件的风险。
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引用次数: 0
Candidozyma auris in The Netherlands: No Evidence of Nosocomial Transmission Supported by Effective Infection Control Policies. 荷兰的金黄色念珠菌:没有有效感染控制政策支持的医院传播证据。
IF 2.9 3区 生物学 Q2 MYCOLOGY Pub Date : 2026-01-10 DOI: 10.1007/s11046-025-01024-7
Chiara C de Groot, Bram Spruijtenburg, Juliëtte A Severin, Karin van Dijk, Jochem B Buil, Paul E Verweij, Auke W de Jong, Eelco F J Meijer

The yeast Candidozyma auris has emerged globally as a major threat to public health. Outbreaks are frequently reported and difficult to control. In the Netherlands, C. auris is rarely detected although national surveillance has been set up. Here, we present all Dutch C. auris cases reported from March 2018 until April 2025. Antifungal susceptibility testing (AFST) using broth microdilution and whole genome sequencing (WGS) were conducted to evaluate antifungal resistance and genetic relatedness. A total of 26 cases of C. auris infection or colonization were reported across 22 different medical institutions in the Netherlands. Most patients had a history of travel to countries with prior reports of C. auris and were hospitalized in foreign medical centers. All patients were admitted in isolation, and all but one remained in isolation for the duration of their hospitalization. WGS showed isolates belonged to clade I or III. Analysis of travel history, contact tracing and WGS data showed no evidence of nosocomial transmission. All isolates were non-wild type to fluconazole with many harboring corresponding mutations in ERG11. One isolate was non-wild type to 5FC and another one to echinocandins including rezafungin. The latter harbored a FKS1F635Y mutation and was imported from Greece. To conclude, C. auris cases are steadily increasing in the Netherlands. Nonetheless, until now cases seem solely imported from abroad with no evidence for nosocomial transmission. This can be attributed to effective infection prevention and control policies. The C. auris isolates were all non-wild type for fluconazole and a single isolate was non-wild type for echinocandins.

耳念珠菌已成为全球公共卫生的主要威胁。疫情频繁报告,难以控制。在荷兰,虽然已经建立了国家监测,但很少发现金黄色葡萄球菌。在这里,我们列出了2018年3月至2025年4月报告的所有荷兰C. auris病例。采用微量肉汤稀释法进行抗真菌药敏试验(AFST)和全基因组测序(WGS)评价菌株的抗真菌耐药性和遗传亲缘关系。荷兰22个不同的医疗机构共报告了26例耳念珠菌感染或定植病例。大多数患者有前往既往报告有C. auris的国家的旅行史,并在国外医疗中心住院。所有患者均被隔离入院,除一人外,其余患者在住院期间均被隔离。WGS显示分离株属于I或III枝。对旅行史、接触者追踪和WGS数据的分析显示没有医院传播的证据。所有分离株均为氟康唑的非野生型,许多菌株携带相应的ERG11突变。一株分离物对5FC为非野生型,另一株分离物对包括rezafungin在内的棘白菌素为非野生型。后者携带一个FKS1F635Y突变,是从希腊输入的。总之,荷兰的金黄色葡萄球菌病例正在稳步增加。尽管如此,到目前为止,病例似乎完全是从国外输入的,没有医院传播的证据。这可归因于有效的感染预防和控制政策。金黄色葡萄球菌对氟康唑的分离株均为非野生型,对棘白菌素的分离株为非野生型。
{"title":"Candidozyma auris in The Netherlands: No Evidence of Nosocomial Transmission Supported by Effective Infection Control Policies.","authors":"Chiara C de Groot, Bram Spruijtenburg, Juliëtte A Severin, Karin van Dijk, Jochem B Buil, Paul E Verweij, Auke W de Jong, Eelco F J Meijer","doi":"10.1007/s11046-025-01024-7","DOIUrl":"10.1007/s11046-025-01024-7","url":null,"abstract":"<p><p>The yeast Candidozyma auris has emerged globally as a major threat to public health. Outbreaks are frequently reported and difficult to control. In the Netherlands, C. auris is rarely detected although national surveillance has been set up. Here, we present all Dutch C. auris cases reported from March 2018 until April 2025. Antifungal susceptibility testing (AFST) using broth microdilution and whole genome sequencing (WGS) were conducted to evaluate antifungal resistance and genetic relatedness. A total of 26 cases of C. auris infection or colonization were reported across 22 different medical institutions in the Netherlands. Most patients had a history of travel to countries with prior reports of C. auris and were hospitalized in foreign medical centers. All patients were admitted in isolation, and all but one remained in isolation for the duration of their hospitalization. WGS showed isolates belonged to clade I or III. Analysis of travel history, contact tracing and WGS data showed no evidence of nosocomial transmission. All isolates were non-wild type to fluconazole with many harboring corresponding mutations in ERG11. One isolate was non-wild type to 5FC and another one to echinocandins including rezafungin. The latter harbored a FKS1<sup>F635Y</sup> mutation and was imported from Greece. To conclude, C. auris cases are steadily increasing in the Netherlands. Nonetheless, until now cases seem solely imported from abroad with no evidence for nosocomial transmission. This can be attributed to effective infection prevention and control policies. The C. auris isolates were all non-wild type for fluconazole and a single isolate was non-wild type for echinocandins.</p>","PeriodicalId":19017,"journal":{"name":"Mycopathologia","volume":"191 1","pages":"17"},"PeriodicalIF":2.9,"publicationDate":"2026-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12789240/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145945243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Fluorescent Staining Using Blankophor for the Diagnosis of Sporotrichosis on Fresh Biopsies. 空白斑点荧光染色对新鲜活组织孢子菌病的诊断。
IF 2.9 3区 生物学 Q2 MYCOLOGY Pub Date : 2026-01-06 DOI: 10.1007/s11046-025-01041-6
Regielly Caroline Raimundo Cognialli, Marisol Dominguez Muro, Vânia Aparecida Vicente, Jacques F Meis, Eelco F J Meijer, Flávio Queiroz-Telles

Sporotrichosis is an implantation mycosis with a high incidence in Brazil. Diagnosing human sporotrichosis poses significant challenges, which can lead to increased morbidity and prolonged treatment duration. Direct examination of fresh biopsies using Blankophor represents a valuable tool for rapid diagnosis, offering high sensitivity.

孢子菌病是一种植入性真菌病,在巴西发病率很高。诊断人类孢子虫病带来了重大挑战,这可能导致发病率增加和治疗时间延长。使用布兰克ophor直接检查新鲜活检代表了快速诊断的宝贵工具,提供高灵敏度。
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引用次数: 0
Otomycosis in Southern China: a retrospective analysis of clinical presentation, otoendoscopic features, and causative pathogens. 中国南方耳真菌病:临床表现、耳内窥镜特征和致病病原体的回顾性分析。
IF 2.9 3区 生物学 Q2 MYCOLOGY Pub Date : 2025-12-26 DOI: 10.1007/s11046-025-01036-3
Qiaohui Wang, Dandan Xu, Yiman Li, Yingxuan Zhang, Xuhua Tang, Xianren Wang, Jiande Han, Huilin Su

Background: Otomycosis is a common fungal infection of the external auditory canal (EAC), with a higher incidence in tropical and subtropical regions. Epidemiological information on otomycosis in southern China is limited. This study aimed to characterize the clinical manifestations, otoendoscopic features, and pathogen distribution of otomycosis in southern China.

Methods: A retrospective analysis was conducted of 192 confirmed cases of otomycosis among patients at a tertiary hospital in Guangzhou, southern China.

Results: The most common presentation was ear pruritus, followed by hearing loss, aural fullness, otorrhea, tinnitus, and otalgia. Unilateral infection was more common than bilateral infection. The EAC was the primary site affected. Characteristic findings included crusts, congestion, fungoid substance, exudate, and swelling. These features (especially crusts, congestion, swelling, and fungoid substance) were significantly associated with fungal positivity. Of the 110 cases in which fungal pathogens were identified, the majority (103, 93.64%) were Aspergillus species including A. terreus (n = 69), A. flavus (n = 16), A. niger (n = 13), A. sclerotiorum (n = 2), A. oryzae (n = 1), A. sydowii (n = 1) and A. tamarii (n = 1); Candida species accounted for 4 isolates (3.64%), and one isolate each was identified for Cladophialophora, Trichophyton, and Scopulariopsis species (0.91%).

Conclusion: These findings provide region-specific insights that are crucial for guiding effective clinical diagnosis, prevention and empirical antifungal therapy. Antifungal therapy covering Aspergillus should be prioritized in this high-incidence area.

背景:耳真菌病是一种常见的外耳道真菌感染,在热带和亚热带地区发病率较高。中国南方地区耳真菌病的流行病学资料有限。本研究旨在探讨中国南方地区耳真菌病的临床表现、耳内窥镜特征和病原体分布。方法:对广州某三级医院确诊的192例耳真菌病患者进行回顾性分析。结果:最常见的表现是耳部瘙痒,其次是听力下降、耳充盈、耳漏、耳鸣和耳痛。单侧感染较双侧感染多见。EAC是受影响的主站点。特征性表现包括结痂、充血、真菌样物质、渗出和肿胀。这些特征(特别是结痂、充血、肿胀和真菌样物质)与真菌阳性显著相关。在鉴定出的110例病原菌中,以曲霉类居多(103例,93.64%),包括土曲霉(69例)、黄曲霉(16例)、黑曲霉(13例)、菌核曲霉(2例)、米曲霉(1例)、西多曲霉(1例)和柽柳曲霉(1例);念珠菌4株(3.64%),Cladophialophora、Trichophyton和Scopulariopsis各1株(0.91%)。结论:这些发现为指导有效的临床诊断、预防和经验性抗真菌治疗提供了重要的区域特异性见解。在这一高发地区,应优先考虑曲霉菌的抗真菌治疗。
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引用次数: 0
Two Groins-One Hand Syndrome: is it an Underdiagnosed Condition? 双腹股沟-单手综合征:是一种未被诊断的疾病吗?
IF 2.9 3区 生物学 Q2 MYCOLOGY Pub Date : 2025-12-24 DOI: 10.1007/s11046-025-01034-5
Marta Szepietowska, Andrzej K Jaworek, Jacek C Szepietowski
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引用次数: 0
Genomic Insights into Lipid Dependency in Atypical Strains of Malassezia pachydermatis. 厚皮马拉色菌非典型菌株脂质依赖性的基因组分析。
IF 2.9 3区 生物学 Q2 MYCOLOGY Pub Date : 2025-12-22 DOI: 10.1007/s11046-025-01039-0
Leyna Díaz, Gemma Castellá, Riccardo Aiese Cigliano, Walter Sanseverino, F Javier Cabañes

The yeasts of the genus Malassezia are part of the normal skin microbiota of a wide range of warm-blooded animals including humans. Within this genus, Malassezia pachydermatis is commonly found in the normal skin microbiota of a variety of animal hosts. Malassezia yeasts are considered lipid-dependent due to their inability to synthesize long chain fatty acids de novo. While M. pachydermatis is typically able to grow on Sabouraud's agar (SGA) without lipid supplementation, certain strains display an atypical lipid dependency and are unable to grow on SGA. The aim of this work was to study the genomic differences between atypical M. pachydermatis strains unable to grow on SGA and the reference strain. The genomes of three atypical lipid-dependent M. pachydermatis strains were sequenced using Illumina technology and compared with the reference genome of M. pachydermatis neotype strain CBS 1879. A total of 397 small variants with a high or moderate impact on the protein were observed in genes involved in lipid metabolism. Of those small variants observed we highlight the ones observed in 12 out of the 13 genes encoding secretory lipases and in the CKI1 gene that is unique to M. pachydermatis within the genus. The analysis of those small variations suggested a variation in their ability to adapt to environmental changes and their requirements to grow in different culture media.

马拉色菌属的酵母菌是包括人类在内的许多温血动物正常皮肤微生物群的一部分。在这个属中,厚皮马拉色菌通常存在于各种动物宿主的正常皮肤微生物群中。马拉色酵母被认为是脂质依赖性的,因为它们不能从头合成长链脂肪酸。虽然厚皮分枝杆菌通常能够在没有脂质补充的情况下在Sabouraud琼脂(SGA)上生长,但某些菌株表现出非典型的脂质依赖性,无法在SGA上生长。本研究的目的是研究不能在SGA上生长的非典型厚皮支原体菌株与参考菌株之间的基因组差异。利用Illumina技术对3株非典型脂依赖性厚皮支原体进行基因组测序,并与厚皮支原体新型菌株CBS 1879的参考基因组进行比较。在参与脂质代谢的基因中,总共观察到397个对蛋白质有高度或中度影响的小变异。在观察到的这些小变异中,我们突出了在编码分泌脂肪酶的13个基因中的12个基因中观察到的变异,以及在厚皮支原体特有的CKI1基因中观察到的变异。对这些微小变化的分析表明,它们适应环境变化的能力和在不同培养基中生长的要求存在差异。
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引用次数: 0
Emergence of Next-Generation Sequencing for Laboratory Diagnosis of Talaromyces marneffei. 新一代测序技术在实验室诊断马尔尼菲Talaromyces marneffei中的应用
IF 2.9 3区 生物学 Q2 MYCOLOGY Pub Date : 2025-12-21 DOI: 10.1007/s11046-025-01028-3
Fanfan Xing, Chaowen Deng, Zhendong Luo, Chi-Ching Tsang, Susanna K P Lau, Patrick C Y Woo

The first case of Talaromyces marneffei infection diagnosed by next-generation sequencing (NGS) was reported in 2018. By 31st December 2024, the number of T. marneffei infections picked up by NGS has increased to a total of at least 241. Most cases were reported from China, reflecting both the regional importance of this infection and its widespread use of NGS for laboratory diagnosis of infectious diseases. Among the cases with clinical details reported, 136 were HIV-negative, which was probably the main reason why T. marneffei was not suspected and the diagnosis was subsequently made with the use of NGS. For these 136 HIV-negative patients, 62 were confirmed to have other forms of immunodeficiencies, such as anti-interferon gamma autoantibodies and post-renal/liver transplantation. The clinical presentations were usually non-specific. At least 18 patients were clinically diagnosed as tuberculosis, and empirical anti-tuberculosis therapy was prescribed to 13 patients and NGS was performed because they did not respond to or deteriorated while on anti-tuberculosis treatment. Apart from infectious diseases, at least another 11 patients were initially misdiagnosed to have benign or malignant tumours, the most common being carcinoma of the lung. The median time for detection of T. marneffei by NGS was 2 (range 1-6) days, which is significantly shorter than the median time for detection by fungal culture [7 (range 5-17) days] (P < 0.0001 by Mann-Whitney U test). NGS has emerged as a promising diagnostic tool for T. marneffei infections, especially for picking up cases in HIV-negative patients and rapid diagnosis.

2018年报道了首例通过新一代测序(NGS)诊断出的马尔尼菲塔芳香菌感染病例。截至2024年12月31日,NGS发现的马尼菲T.感染人数已增加到至少241人。大多数病例报告来自中国,反映了这种感染的区域重要性以及NGS在传染病实验室诊断中的广泛使用。在报告的有临床细节的病例中,136例为艾滋病毒阴性,这可能是没有怀疑马尔尼菲氏弓形虫的主要原因,并且随后使用NGS进行了诊断。在这136例hiv阴性患者中,62例被证实有其他形式的免疫缺陷,如抗干扰素γ自身抗体和肾/肝移植后。临床表现通常是非特异性的。至少18例患者临床诊断为结核病,13例患者接受经验性抗结核治疗,因抗结核治疗无反应或病情恶化而行NGS。除传染病外,至少另有11名病人最初被误诊为良性或恶性肿瘤,其中最常见的是肺癌。NGS法检测马氏单胞菌的中位时间为2天(范围1 ~ 6天),显著短于真菌培养法检测马氏单胞菌的中位时间[7天(范围5 ~ 17天)]
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Mycopathologia
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