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Dynamic Localization of Paraspeckle Components under Osmotic Stress. 渗透胁迫下副颈组件的动态定位
IF 4.3 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-12 DOI: 10.3390/ncrna10020023
Aysegul Yucel-Polat, D. Campos-Melo, Asieh Alikhah, Michael J. Strong
Paraspeckles are nuclear condensates formed by NEAT1_2 lncRNA and different RNA-binding proteins. In general, these membraneless organelles function in the regulation of gene expression and translation and in miRNA processing, and in doing this, they regulate cellular homeostasis and mediate pro-survival in the cell. Despite evidence showing the importance of paraspeckles in the stress response, the dynamics of paraspeckles and their components under conditions of osmotic stress remain unknown. We exposed HEK293T cells to sorbitol and examined NEAT1_2 expression using real-time PCR. Localization and quantification of the main paraspeckle components, NEAT1_2, PSPC1, NONO, and SFPQ, in different cellular compartments was performed using smFISH and immunofluorescence. Our findings showed a significant decrease in total NEAT1_2 expression in cells after osmotic stress. Sorbitol shifted the subcellular localization of NEAT1_2, PSPC1, NONO, and SFPQ from the nucleus to the cytoplasm and decreased the number and size of NEAT1_2 foci in the nucleus. PSPC1 formed immunoreactive cytoplasmic fibrils under conditions of osmotic stress, which slowly disassembled under recovery. Our study deepens the paraspeckle dynamics in response to stress, suggesting a novel role for NEAT1_2 in the cytoplasm in osmotic stress and physiological conditions.
副斑块是由NEAT1_2 lncRNA和不同的RNA结合蛋白形成的核凝聚体。一般来说,这些无膜细胞器具有调控基因表达和翻译以及处理 miRNA 的功能,并以此调控细胞的稳态和促进细胞的存活。尽管有证据表明副斑块在应激反应中的重要性,但副斑块及其成分在渗透压条件下的动态变化仍然未知。我们将 HEK293T 细胞暴露于山梨醇中,并使用实时 PCR 检测 NEAT1_2 的表达。我们还使用 smFISH 和免疫荧光技术对不同细胞区系中的主要副壁细胞成分 NEAT1_2、PSPC1、NONO 和 SFPQ 进行了定位和定量分析。我们的研究结果表明,渗透压后细胞中 NEAT1_2 的总表达量明显下降。山梨醇使NEAT1_2、PSPC1、NONO和SFPQ的亚细胞定位从细胞核转移到细胞质,并减少了细胞核中NEAT1_2病灶的数量和大小。PSPC1在渗透胁迫条件下形成免疫反应性胞质纤维,并在恢复过程中缓慢解体。我们的研究深化了副颈对胁迫的动态响应,表明 NEAT1_2 在渗透胁迫和生理条件下在细胞质中发挥着新的作用。
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引用次数: 0
Functional Significance of miR-4693-5p in Targeting HIF1α and Its Link to Rheumatoid Arthritis Pathogenesis. miR-4693-5p 靶向 HIF1α 的功能意义及其与类风湿关节炎发病机制的联系
IF 4.3 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-10 DOI: 10.3390/ncrna10020022
Mohd Saquib, P. Agnihotri, Ashish Sarkar, Swati Malik, Sonia Mann, Debolina Chakraborty, Lovely Joshi, Rajesh Malhotra, S. Biswas
Rheumatoid arthritis (RA) is a chronic inflammatory autoimmune disease that causes joint inflammation and destruction with an unknown origin. Our study aims to elucidate the molecular mechanism behind HIF1α overexpression in RA. Dysregulated miRNA expressions are known to influence gene behavior, thereby enhancing cell proliferation, inflammation, and resistance to apoptosis, contributing to RA development. Our earlier finding indicated that exogenous miRNA similar to miR-4693-5p may modulate RA-related targets. However, the specific role of miR-4693-5p and its targets in RA remain unexplored. In this study, we found that miR-4693-5p was significantly reduced in PBMCs of RA patients, with evidence suggesting it targets the 3' UTR of HIF1α, thereby potentially contributing to its overexpression in RA. In vitro overexpression of miR-4693-5p leads to the knockdown of HIF1α, resulting in inhibited expression of Survivin to disrupt apoptosis resistance, inflammation suppression, and a reduction in the total cellular ROS response in SW982 and RAFLS cells. The results were validated using the CIA Rat model. In conclusion, this study provides a crucial foundation for understanding the functional role of miR-4693-5p. These findings improve our understanding and provide novel insights into the molecular mechanisms underlying RA pathogenesis.
类风湿性关节炎(RA)是一种慢性炎症性自身免疫性疾病,会导致关节炎症和破坏,其病因不明。我们的研究旨在阐明 RA 中 HIF1α 过度表达背后的分子机制。众所周知,miRNA表达失调会影响基因行为,从而增强细胞增殖、炎症和抗凋亡能力,导致RA发病。我们早前的发现表明,与 miR-4693-5p 相似的外源性 miRNA 可能会调节 RA 相关靶点。然而,miR-4693-5p 及其靶点在 RA 中的具体作用仍有待探索。在本研究中,我们发现 miR-4693-5p 在 RA 患者的 PBMCs 中显著减少,有证据表明它靶向 HIF1α 的 3' UTR,从而可能导致其在 RA 中的过度表达。体外过表达 miR-4693-5p 会导致 HIF1α 被敲除,从而抑制 Survivin 的表达,破坏 SW982 和 RAFLS 细胞的抗凋亡能力、炎症抑制能力和细胞 ROS 总反应的降低。研究结果通过 CIA 大鼠模型进行了验证。总之,这项研究为了解 miR-4693-5p 的功能作用奠定了重要基础。这些发现加深了我们对 RA 发病机制的理解,并提供了新的见解。
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引用次数: 0
More than the SRY: The Non-Coding Landscape of the Y Chromosome and Its Importance in Human Disease. 超越 SRY:Y 染色体的非编码结构及其在人类疾病中的重要性》(More than the SRY: The Non-Coding Landscape of the Y Chromosome and Its Importance in Human Disease)。
IF 4.3 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-10 DOI: 10.3390/ncrna10020021
Emily S. Westemeier-Rice, Michael T. Winters, Travis W. Rawson, Ivan Martinez
Historically, the Y chromosome has presented challenges to classical methodology and philosophy of understanding the differences between males and females. A genetic unsolved puzzle, the Y chromosome was the last chromosome to be fully sequenced. With the advent of the Human Genome Project came a realization that the human genome is more than just genes encoding proteins, and an entire universe of RNA was discovered. This dark matter of biology and the black box surrounding the Y chromosome have collided over the last few years, as increasing numbers of non-coding RNAs have been identified across the length of the Y chromosome, many of which have played significant roles in disease. In this review, we will uncover what is known about the connections between the Y chromosome and the non-coding RNA universe that originates from it, particularly as it relates to long non-coding RNAs, microRNAs and circular RNAs.
从历史上看,Y 染色体对理解男女差异的经典方法论和哲学提出了挑战。作为一个未解的基因谜题,Y 染色体是最后一个被完全测序的染色体。随着人类基因组计划的出现,人们意识到人类基因组不仅仅是编码蛋白质的基因,还发现了整个 RNA 宇宙。在过去几年中,这一生物学暗物质与围绕 Y 染色体的黑匣子发生了碰撞,因为在 Y 染色体的整个长度上发现了越来越多的非编码 RNA,其中许多在疾病中发挥了重要作用。在这篇综述中,我们将揭示 Y 染色体与源于 Y 染色体的非编码 RNA 之间的关系,尤其是与长非编码 RNA、microRNA 和环状 RNA 的关系。
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引用次数: 0
FuncPEP v2.0: An Updated Database of Functional Short Peptides Translated from Non-Coding RNAs. FuncPEP v2.0:从非编码 RNA 翻译而来的功能性短肽的最新数据库。
IF 4.3 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-04-09 DOI: 10.3390/ncrna10020020
Swati Mohapatra, Anik Banerjee, Paola C. Rausseo, M. Dragomir, G. Manyam, B. Broom, G. Calin
Over the past decade, there have been reports of short novel functional peptides (less than 100 aa in length) translated from so-called non-coding RNAs (ncRNAs) that have been characterized using mass spectrometry (MS) and large-scale proteomics studies. Therefore, understanding the bivalent functions of some ncRNAs as transcripts that encode both functional RNAs and short peptides, which we named ncPEPs, will deepen our understanding of biology and disease. In 2020, we published the first database of functional peptides translated from non-coding RNAs-FuncPEP. Herein, we have performed an update including the newly published ncPEPs from the last 3 years along with the categorization of host ncRNAs. FuncPEP v2.0 contains 152 functional ncPEPs, out of which 40 are novel entries. A PubMed search from August 2020 to July 2023 incorporating specific keywords was performed and screened for publications reporting validated functional peptides derived from ncRNAs. We did not observe a significant increase in newly discovered functional ncPEPs, but a steady increase. The novel identified ncPEPs included in the database were characterized by a wide array of molecular and physiological parameters (i.e., types of host ncRNA, species distribution, chromosomal density, distribution of ncRNA length, identification methods, molecular weight, and functional distribution across humans and other species). We consider that, despite the fact that MS can now easily identify ncPEPs, there still are important limitations in proving their functionality.
在过去的十年中,有报告称从所谓的非编码 RNA(ncRNA)中翻译出了新型短功能肽(长度小于 100 aa),这些肽已通过质谱(MS)和大规模蛋白质组学研究进行了表征。因此,了解某些 ncRNAs 的二重功能,即同时编码功能 RNAs 和短肽的转录本(我们将其命名为 ncPEPs),将加深我们对生物学和疾病的理解。2020 年,我们发布了首个从非编码 RNA 翻译而来的功能肽数据库--FuncPEP。在此,我们对过去三年新发表的 ncPEPs 以及宿主 ncRNAs 的分类进行了更新。FuncPEP v2.0 包含 152 个功能性 ncPEPs,其中 40 个为新条目。在 2020 年 8 月至 2023 年 7 月期间,我们在 PubMed 上搜索了特定的关键词,并筛选了报道从 ncRNAs 派生的有效功能肽的出版物。我们没有观察到新发现的功能性 ncPEPs 有明显增加,而是稳步增长。数据库中新发现的 ncPEPs 具有一系列分子和生理参数(即宿主 ncRNA 的类型、物种分布、染色体密度、ncRNA 长度分布、鉴定方法、分子量以及在人类和其他物种中的功能分布)。我们认为,尽管现在 MS 可以轻松识别 ncPEPs,但在证明其功能性方面仍有很大的局限性。
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引用次数: 0
Functions of RNAi Pathways in Ribosomal RNA Regulation 核糖体 RNA 调控中的 RNAi 途径功能
IF 4.3 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-29 DOI: 10.3390/ncrna10020019
A. S. Shatskikh, E. Fefelova, M. Klenov
Argonaute proteins, guided by small RNAs, play crucial roles in gene regulation and genome protection through RNA interference (RNAi)-related mechanisms. Ribosomal RNAs (rRNAs), encoded by repeated rDNA units, constitute the core of the ribosome being the most abundant cellular transcripts. rDNA clusters also serve as sources of small RNAs, which are loaded into Argonaute proteins and are able to regulate rDNA itself or affect other gene targets. In this review, we consider the impact of small RNA pathways, specifically siRNAs and piRNAs, on rRNA gene regulation. Data from diverse eukaryotic organisms suggest the potential involvement of small RNAs in various molecular processes related to the rDNA transcription and rRNA fate. Endogenous siRNAs are integral to the chromatin-based silencing of rDNA loci in plants and have been shown to repress rDNA transcription in animals. Small RNAs also play a role in maintaining the integrity of rDNA clusters and may function in the cellular response to rDNA damage. Studies on the impact of RNAi and small RNAs on rRNA provide vast opportunities for future exploration.
Argonaute 蛋白在小 RNA 的引导下,通过与 RNA 干扰(RNAi)相关的机制,在基因调控和基因组保护方面发挥着至关重要的作用。由重复的 rDNA 单元编码的核糖体 RNA(rRNA)构成了核糖体的核心,是最丰富的细胞转录本。rDNA 簇也是小 RNA 的来源,小 RNA 被载入 Argonaute 蛋白,能够调控 rDNA 本身或影响其他基因靶标。在这篇综述中,我们将探讨小 RNA 途径,特别是 siRNA 和 piRNA 对 rRNA 基因调控的影响。来自不同真核生物的数据表明,小 RNA 可能参与了与 rDNA 转录和 rRNA 转归相关的各种分子过程。内源 siRNA 是植物中基于染色质的 rDNA 基因座沉默不可或缺的部分,在动物中也被证明能抑制 rDNA 的转录。小 RNA 还在维持 rDNA 簇的完整性方面发挥作用,并可能在细胞对 rDNA 损伤的反应中发挥作用。关于 RNAi 和小 RNA 对 rRNA 影响的研究为未来的探索提供了广阔的空间。
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引用次数: 0
Circulating miRNAs as Novel Clinical Biomarkers in Temporal Lobe Epilepsy. 循环 miRNAs 作为颞叶癫痫的新型临床生物标记物。
IF 4.3 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-17 DOI: 10.3390/ncrna10020018
Lorenza Guarnieri, Nicola Amodio, Francesca Bosco, Sara Carpi, Martina Tallarico, Luca Gallelli, Vincenzo Rania, Rita Citraro, Antonio Leo, Giovambattista De Sarro

Temporal lobe epilepsy (TLE) represents the most common form of refractory focal epilepsy. The identification of innovative clinical biomarkers capable of categorizing patients with TLE, allowing for improved treatment and outcomes, still represents an unmet need. Circulating microRNAs (c-miRNAs) are short non-coding RNAs detectable in body fluids, which play crucial roles in the regulation of gene expression. Their characteristics, including extracellular stability, detectability through non-invasive methods, and responsiveness to pathological changes and/or therapeutic interventions, make them promising candidate biomarkers in various disease settings. Recent research has investigated c-miRNAs in various bodily fluids, including serum, plasma, and cerebrospinal fluid, of TLE patients. Despite some discrepancies in methodologies, cohort composition, and normalization strategies, a common dysregulated signature of c-miRNAs has emerged across different studies, providing the basis for using c-miRNAs as novel biomarkers for TLE patient management.

颞叶癫痫(TLE)是最常见的难治性局灶性癫痫。确定能够对颞叶癫痫患者进行分类的创新临床生物标志物,从而改善治疗和预后,仍是一项尚未满足的需求。循环微RNA(c-miRNA)是可在体液中检测到的非编码短RNA,在基因表达调控中起着至关重要的作用。它们具有细胞外稳定性、可通过非侵入性方法检测、对病理变化和/或治疗干预反应灵敏等特点,因此在各种疾病中是很有前途的候选生物标记物。最近的研究对狼疮患者各种体液(包括血清、血浆和脑脊液)中的 c-miRNA 进行了调查。尽管在方法学、队列组成和归一化策略方面存在一些差异,但不同研究中出现了共同的 c-miRNA 失调特征,为把 c-miRNA 用作治疗 TLE 患者的新型生物标记物奠定了基础。
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引用次数: 0
Targeting MicroRNAs with Small Molecules. 用小分子靶向 MicroRNA。
IF 4.3 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-14 DOI: 10.3390/ncrna10020017
Kisanet Tadesse, Raphael I Benhamou

MicroRNAs (miRs) have been implicated in numerous diseases, presenting an attractive target for the development of novel therapeutics. The various regulatory roles of miRs in cellular processes underscore the need for precise strategies. Recent advances in RNA research offer hope by enabling the identification of small molecules capable of selectively targeting specific disease-associated miRs. This understanding paves the way for developing small molecules that can modulate the activity of disease-associated miRs. Herein, we discuss the progress made in the field of drug discovery processes, transforming the landscape of miR-targeted therapeutics by small molecules. By leveraging various approaches, researchers can systematically identify compounds to modulate miR function, providing a more potent intervention either by inhibiting or degrading miRs. The implementation of these multidisciplinary approaches bears the potential to revolutionize treatments for diverse diseases, signifying a significant stride towards the targeting of miRs by precision medicine.

微小核糖核酸(miRs)与多种疾病有关,是开发新型疗法的诱人靶点。miRs 在细胞过程中发挥着各种调控作用,因此需要制定精确的策略。RNA 研究的最新进展给人们带来了希望,因为它能够鉴定出能够选择性地靶向特定疾病相关 miRs 的小分子。这种认识为开发能调节疾病相关 miRs 活性的小分子铺平了道路。在此,我们将讨论药物发现过程领域所取得的进展,这些进展改变了小分子 miR 靶向疗法的格局。通过利用各种方法,研究人员可以系统地发现调节 miR 功能的化合物,通过抑制或降解 miR 提供更有效的干预。这些多学科方法的实施有可能彻底改变各种疾病的治疗方法,标志着精准医学在靶向 miRs 方面迈出了重要的一步。
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引用次数: 0
miR-125 in Breast Cancer Etiopathogenesis: An Emerging Role as a Biomarker in Differential Diagnosis, Regenerative Medicine, and the Challenges of Personalized Medicine. 乳腺癌发病机制中的 miR-125:miR-125 在乳腺癌发病机制中的作用:作为生物标志物在鉴别诊断、再生医学和个性化医学挑战中的新兴角色。
IF 4.3 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-21 DOI: 10.3390/ncrna10020016
Roberto Piergentili, Enrico Marinelli, Gaspare Cucinella, Alessandra Lopez, Gabriele Napoletano, Giuseppe Gullo, Simona Zaami

Breast Cancer (BC) is one of the most common cancer types worldwide, and it is characterized by a complex etiopathogenesis, resulting in an equally complex classification of subtypes. MicroRNA (miRNA or miR) are small non-coding RNA molecules that have an essential role in gene expression and are significantly linked to tumor development and angiogenesis in different types of cancer. Recently, complex interactions among coding and non-coding RNA have been elucidated, further shedding light on the complexity of the roles these molecules fulfill in cancer formation. In this context, knowledge about the role of miR in BC has significantly improved, highlighting the deregulation of these molecules as additional factors influencing BC occurrence, development and classification. A considerable number of papers has been published over the past few years regarding the role of miR-125 in human pathology in general and in several types of cancer formation in particular. Interestingly, miR-125 family members have been recently linked to BC formation as well, and complex interactions (competing endogenous RNA networks, or ceRNET) between this molecule and target mRNA have been described. In this review, we summarize the state-of-the-art about research on this topic.

乳腺癌(BC)是全球最常见的癌症类型之一,其发病机制复杂,亚型分类也同样复杂。微小 RNA(miRNA 或 miR)是一种非编码 RNA 小分子,在基因表达中起着至关重要的作用,与不同类型癌症中的肿瘤发生和血管生成有着重要联系。最近,人们阐明了编码和非编码 RNA 之间复杂的相互作用,进一步揭示了这些分子在癌症形成过程中所起作用的复杂性。在此背景下,人们对 miR 在 BC 中作用的认识有了显著提高,强调了这些分子的失调是影响 BC 发生、发展和分类的额外因素。在过去几年中,发表了大量有关 miR-125 在人类病理学,特别是在几种癌症形成中的作用的论文。有趣的是,miR-125 家族成员最近也与 BC 的形成有关,而且该分子与靶 mRNA 之间复杂的相互作用(竞争性内源性 RNA 网络,或 ceRNET)也已被描述。在这篇综述中,我们将总结有关这一主题的最新研究进展。
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引用次数: 0
Topographic Distribution of miRNAs (miR-30a, miR-223, miR-let-7a, miR-let-7f, miR-451, and miR-486) in the Plasma Extracellular Vesicles 血浆细胞外小泡中 miRNA(miR-30a、miR-223、miR-let-7a、miR-let-7f、miR-451 和 miR-486)的地形分布图
IF 4.3 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-15 DOI: 10.3390/ncrna10010015
Tatiana Petrova, Olga Kalinina, Arthur Aquino, E. Grigoryev, N. Dubashynskaya, Kseniya Zubkova, Anna Kostareva, A. Golovkin
There are many articles on the quantitative analysis of miRNAs contained in a population of EVs of different sizes under various physiological and pathological conditions. For such analysis, it is important to correctly quantify the miRNA contents of EVs. It should be considered that quantification is skewed depending on the isolation protocol, and different miRNAs are degraded by nucleases with different efficiencies. In addition, it is important to consider the contribution of miRNAs coprecipitating with the EVs population, because the amount of miRNAs in the EVs population under study is skewed without appropriate enzymatic treatment. By studying a population of EVs from the blood plasma of healthy donors, we found that the absolute amount of miRNA inside the vesicles is commensurate with the amount of the same type of miRNA adhered to the outside of the EVs. The inside/outside ratio ranged from 1.02 to 2.64 for different investigated miRNAs. According to our results, we propose the hypothesis that high occupancy of miRNAs on the outer surface of EVs influence on the transporting RNA repertoire no less than the inner cargo received from the host cell.
有许多文章对各种生理和病理条件下不同大小的EVs群体中所含的miRNA进行定量分析。要进行此类分析,必须正确量化 EVs 中的 miRNA 含量。需要考虑的是,不同的分离方案会使定量出现偏差,而且不同的 miRNA 被核酸酶降解的效率也不同。此外,考虑与 EVs 群体共沉淀的 miRNA 的贡献也很重要,因为如果没有适当的酶处理,所研究的 EVs 群体中 miRNA 的数量就会出现偏差。通过研究健康捐献者血浆中的 EVs 群体,我们发现囊泡内 miRNA 的绝对量与 EVs 外部附着的同类 miRNA 的量相称。不同研究的 miRNA 的内部/外部比率介于 1.02 至 2.64 之间。根据我们的研究结果,我们提出了一个假设:miRNA 在 EVs 外表面的高占有率对运输 RNA 的影响不亚于从宿主细胞接收的内部货物。
{"title":"Topographic Distribution of miRNAs (miR-30a, miR-223, miR-let-7a, miR-let-7f, miR-451, and miR-486) in the Plasma Extracellular Vesicles","authors":"Tatiana Petrova, Olga Kalinina, Arthur Aquino, E. Grigoryev, N. Dubashynskaya, Kseniya Zubkova, Anna Kostareva, A. Golovkin","doi":"10.3390/ncrna10010015","DOIUrl":"https://doi.org/10.3390/ncrna10010015","url":null,"abstract":"There are many articles on the quantitative analysis of miRNAs contained in a population of EVs of different sizes under various physiological and pathological conditions. For such analysis, it is important to correctly quantify the miRNA contents of EVs. It should be considered that quantification is skewed depending on the isolation protocol, and different miRNAs are degraded by nucleases with different efficiencies. In addition, it is important to consider the contribution of miRNAs coprecipitating with the EVs population, because the amount of miRNAs in the EVs population under study is skewed without appropriate enzymatic treatment. By studying a population of EVs from the blood plasma of healthy donors, we found that the absolute amount of miRNA inside the vesicles is commensurate with the amount of the same type of miRNA adhered to the outside of the EVs. The inside/outside ratio ranged from 1.02 to 2.64 for different investigated miRNAs. According to our results, we propose the hypothesis that high occupancy of miRNAs on the outer surface of EVs influence on the transporting RNA repertoire no less than the inner cargo received from the host cell.","PeriodicalId":19271,"journal":{"name":"Non-Coding RNA","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139834813","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Topographic Distribution of miRNAs (miR-30a, miR-223, miR-let-7a, miR-let-7f, miR-451, and miR-486) in the Plasma Extracellular Vesicles 血浆细胞外小泡中 miRNA(miR-30a、miR-223、miR-let-7a、miR-let-7f、miR-451 和 miR-486)的地形分布图
IF 4.3 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-02-15 DOI: 10.3390/ncrna10010015
Tatiana Petrova, Olga Kalinina, Arthur Aquino, E. Grigoryev, N. Dubashynskaya, Kseniya Zubkova, Anna Kostareva, A. Golovkin
There are many articles on the quantitative analysis of miRNAs contained in a population of EVs of different sizes under various physiological and pathological conditions. For such analysis, it is important to correctly quantify the miRNA contents of EVs. It should be considered that quantification is skewed depending on the isolation protocol, and different miRNAs are degraded by nucleases with different efficiencies. In addition, it is important to consider the contribution of miRNAs coprecipitating with the EVs population, because the amount of miRNAs in the EVs population under study is skewed without appropriate enzymatic treatment. By studying a population of EVs from the blood plasma of healthy donors, we found that the absolute amount of miRNA inside the vesicles is commensurate with the amount of the same type of miRNA adhered to the outside of the EVs. The inside/outside ratio ranged from 1.02 to 2.64 for different investigated miRNAs. According to our results, we propose the hypothesis that high occupancy of miRNAs on the outer surface of EVs influence on the transporting RNA repertoire no less than the inner cargo received from the host cell.
有许多文章对各种生理和病理条件下不同大小的EVs群体中所含的miRNA进行定量分析。要进行此类分析,必须正确量化 EVs 中的 miRNA 含量。需要考虑的是,不同的分离方案会使定量出现偏差,而且不同的 miRNA 被核酸酶降解的效率也不同。此外,考虑与 EVs 群体共沉淀的 miRNA 的贡献也很重要,因为如果没有适当的酶处理,所研究的 EVs 群体中 miRNA 的数量就会出现偏差。通过研究健康捐献者血浆中的 EVs 群体,我们发现囊泡内 miRNA 的绝对量与 EVs 外部附着的同类 miRNA 的量相称。不同研究的 miRNA 的内部/外部比率介于 1.02 至 2.64 之间。根据我们的研究结果,我们提出了一个假设:miRNA 在 EVs 外表面的高占有率对运输 RNA 的影响不亚于从宿主细胞接收的内部货物。
{"title":"Topographic Distribution of miRNAs (miR-30a, miR-223, miR-let-7a, miR-let-7f, miR-451, and miR-486) in the Plasma Extracellular Vesicles","authors":"Tatiana Petrova, Olga Kalinina, Arthur Aquino, E. Grigoryev, N. Dubashynskaya, Kseniya Zubkova, Anna Kostareva, A. Golovkin","doi":"10.3390/ncrna10010015","DOIUrl":"https://doi.org/10.3390/ncrna10010015","url":null,"abstract":"There are many articles on the quantitative analysis of miRNAs contained in a population of EVs of different sizes under various physiological and pathological conditions. For such analysis, it is important to correctly quantify the miRNA contents of EVs. It should be considered that quantification is skewed depending on the isolation protocol, and different miRNAs are degraded by nucleases with different efficiencies. In addition, it is important to consider the contribution of miRNAs coprecipitating with the EVs population, because the amount of miRNAs in the EVs population under study is skewed without appropriate enzymatic treatment. By studying a population of EVs from the blood plasma of healthy donors, we found that the absolute amount of miRNA inside the vesicles is commensurate with the amount of the same type of miRNA adhered to the outside of the EVs. The inside/outside ratio ranged from 1.02 to 2.64 for different investigated miRNAs. According to our results, we propose the hypothesis that high occupancy of miRNAs on the outer surface of EVs influence on the transporting RNA repertoire no less than the inner cargo received from the host cell.","PeriodicalId":19271,"journal":{"name":"Non-Coding RNA","volume":null,"pages":null},"PeriodicalIF":4.3,"publicationDate":"2024-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139775391","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Non-Coding RNA
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