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The Equations of Life: how Physics Shapes Evolution by Charles S. Cockell, Basic Books, 2018 《生命方程式:物理学如何塑造进化》,查尔斯·s·科克尔著,Basic Books, 2018年
IF 2 4区 物理与天体物理 Q2 Agricultural and Biological Sciences Pub Date : 2018-12-01 DOI: 10.1007/s11084-018-9569-2
P. Bahn
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引用次数: 0
The Birthplace of Proto-Life: Role of Secondary Minerals in Forming Metallo-Proteins through Water-Rock Interaction of Hadean Rocks. 原生命的诞生地:次生矿物在通过哈代岩石的水-岩石相互作用形成金属蛋白中的作用。
IF 2 4区 物理与天体物理 Q2 Agricultural and Biological Sciences Pub Date : 2018-12-01 Epub Date: 2019-04-03 DOI: 10.1007/s11084-019-09571-y
Kazumi Yoshiya, Tomohiko Sato, Soichi Omori, Shigenori Maruyama

The surface of Hadean Earth was mainly covered with three types of rocks-komatiite, KREEP basalt and anorthosite-which were remarkably different from those on the modern Earth. The water-rock interaction between these rocks and water provided a highly reducing environment and formed secondary minerals on the surface of the rocks that are important for producing metallo-enzymes for the emergence of primordial life. Previous studies suggested a correlation between the active site of metallo-enzymes and sulfide minerals based on the affinity of their structures, but they did not discuss the origin of metallic elements contained in these minerals which is critical to understanding where life began. We investigated secondary minerals formed through water-rock interactions of komatiite in a subaerial geyser system, then discussed the relationship between the active site of metallo-enzymes and secondary minerals. Instead of komatiite, we used serpentinite collected from the Hakuba Happo area, Nagano Prefecture in central-north Japan, which is thought to be a modern analog for the Hadean environment. We found several minor minerals, such as magnetite, chromite, pyrite and pentlandite in addition to serpentine minerals. Pentlandite has not been mentioned in previous studies as one of the candidates that could supply important metallic elements to build metallo-enzymes. It has been shown to be a catalyst for hydrogen generation possibly, because of structural similarity to the active site of hydrogenases. We consider the possibility that nickel-iron sulfide, pentlandite, could be important minerals for the origin of life. In addition, we estimated what kinds of minor minerals would be obtained from the water-rock interaction of these rocks using thermodynamic calculations. KREEP basalt contains a large amount of iron and it could be useful for producing metallo-enzymes, especially ferredoxins-electron transfer enzymes, which may have assisted in the emergence of life.

哈代地球表面主要覆盖着三种类型的岩石--孔雀石、KREEP 玄武岩和正长岩,它们与现代地球上的岩石有着明显的不同。这些岩石与水的相互作用提供了一个高度还原的环境,并在岩石表面形成了次生矿物,这些次生矿物对于产生原始生命出现所需的金属酶非常重要。以前的研究根据硫化物矿物结构的亲和性,提出了金属酶活性位点与硫化物矿物之间的相关性,但没有讨论这些矿物中所含金属元素的来源,而这对于了解生命的起源至关重要。我们研究了在一个地下间歇泉系统中通过水-岩石相互作用形成的科马蒂石次生矿物,然后讨论了金属酶活性位点与次生矿物之间的关系。我们使用了从日本中北部长野县白马八方地区采集的蛇纹石,而不是光卤石。除了蛇纹石矿物外,我们还发现了一些次要矿物,如磁铁矿、铬铁矿、黄铁矿和戊兰特石。在以前的研究中,我们没有提到过彭脱石是可以提供重要金属元素来构建金属酶的候选矿物之一。它被证明是氢气生成的催化剂,这可能是因为它的结构与氢气酶的活性位点相似。我们认为,硫化镍铁、五菱锡矿可能是生命起源的重要矿物。此外,我们还通过热力学计算估算了这些岩石在水与岩石相互作用过程中会产生哪些次要矿物。KREEP 玄武岩含有大量的铁,它可能有助于产生金属酶,特别是铁氧还蛋白-电子传递酶,这可能有助于生命的出现。
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引用次数: 6
A Possible Prebiotic Ancestry of Porphyrin-Type Protein Cofactors. 卟啉型蛋白质辅因子的可能前生物起源。
IF 2 4区 物理与天体物理 Q2 Agricultural and Biological Sciences Pub Date : 2018-12-01 Epub Date: 2018-12-13 DOI: 10.1007/s11084-018-9567-4
Hannes Lukas Pleyer, Henry Strasdeit, Stefan Fox

In previous experiments that simulated conditions on primordial volcanic islands, we demonstrated the abiotic formation of hydrophobic porphyrins. The present study focused on the question whether such porphyrins can be metalated by prebiotically plausible metal ion sources. We used water-insoluble octaethylporphyrin (H2oep) as a model compound. Experiments were conducted in a nitrogen atmosphere under cyclic wet-dry conditions in order to simulate the fluctuating environment in prebiotic rock pools. Wetting-drying proved to be a crucial factor. Significant yields of the metalloporphyrins (20-78% with respect to H2oep) were obtained from the soluble salts MCl2 (M = Mg, Fe, Co, Ni and Cu) in freshwater. Even almost insoluble minerals and rocks metalated the porphyrin. Basalt (an iron source, 11% yield), synthetic jaipurite (CoS, 33%) and synthetic covellite (CuS, 57%) were most efficient. Basalt, magnetite and FeCl2 gave considerably higher yields in artificial seawater than in freshwater. From iron sources, the highest yields, however, were obtained in an acidic medium (hydrochloric acid with an initial pH of 2.1). Under these conditions, iron meteorites also metalated the porphyrin. Acidic conditions were considered because they are known to occur during eruptions on volcanic islands. Octaethylporphyrinatomagnesium(II) did not form in acidic medium and was unstable towards dissolved Fe2+. It is therefore questionable whether magnesium porphyrins, i.e. possible ancestors of chlorophyll, could have accumulated in primordial rock pools. However, abiotically formed ancestors of the modern cofactors heme (Fe), B12 (Co), and F430 (Ni) may have been available to hypothetical protometabolisms and early organisms.

在之前模拟原始火山岛条件的实验中,我们证明了疏水卟啉的非生物形成。本研究的重点是这类卟啉是否会被生物学上可信的金属离子源金属化。我们使用不溶于水的八乙基卟啉(H2oep)作为模型化合物。实验在氮气环境中进行,在循环干湿条件下进行,以模拟前生物岩石池中的波动环境。事实证明,湿-干是一个关键因素。从淡水中的可溶性盐 MCl2(M = Mg、Fe、Co、Ni 和 Cu)中获得了大量金属卟啉(相对于 H2oep 为 20-78%)。即使是几乎不溶解的矿物和岩石也会使卟啉金属化。玄武岩(一种铁源,产量为 11%)、合成黝帘石(CoS,33%)和合成钴铁矿(CuS,57%)最有效。玄武岩、磁铁矿和氯化铁在人工海水中的产量比在淡水中高得多。然而,在酸性介质(初始 pH 值为 2.1 的盐酸)中,铁源的产量最高。在这些条件下,铁陨石也会使卟啉金属化。之所以考虑酸性条件,是因为已知火山岛喷发时会出现酸性条件。八乙基卟啉镁(II)在酸性介质中不形成,而且对溶解的 Fe2+ 不稳定。因此,卟啉镁(即叶绿素的可能祖先)是否会在原始岩石池中积累是个问题。不过,非生物形成的现代辅助因子血红素(Fe)、B12(Co)和 F430(Ni)的祖先可能已经为假定的原生代谢和早期生物所利用。
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引用次数: 16
Milan M. Ćirković: The Great Silence: The Science and Philosophy of Fermi’s Paradox 米兰M. Ćirković:大沉默:费米悖论的科学和哲学
IF 2 4区 物理与天体物理 Q2 Agricultural and Biological Sciences Pub Date : 2018-11-14 DOI: 10.1007/s11084-018-9568-3
J. Wright
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引用次数: 0
Publication of Abstracts and Full Papers from the International Conference on the Origin of Life, San Diego, 2017. 2017年圣地亚哥生命起源国际会议论文摘要和全文出版。
IF 2 4区 物理与天体物理 Q2 Agricultural and Biological Sciences Pub Date : 2018-09-01 DOI: 10.1007/s11084-017-9549-y
Alan W Schwartz

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引用次数: 0
Models of Replicator Proliferation Involving Differential Replicator Subunit Stability. 涉及差异复制子亚基稳定性的复制子增殖模型。
IF 2 4区 物理与天体物理 Q2 Agricultural and Biological Sciences Pub Date : 2018-09-01 Epub Date: 2018-09-10 DOI: 10.1007/s11084-018-9561-x
Zewei Li, Runhe Lyu, John Tower

Several models for the origin of life involve molecules that are capable of self-replication, such as self-replicating polymers composed of RNA or DNA or amino acids. Here we consider a hypothetical replicator (AB) composed of two subunits, A and B. Programs written in Python and C programming languages were used to model AB replicator abundance as a function of cycles of replication (iterations), under specified hypothetical conditions. Two non-exclusive models describe how a reduced stability for B relative to A can have an advantage for replicator activity and/or evolution by generating free A subunits. In model 1, free A subunits associate with AB replicators to create AAB replicators with greater activity. In simulations, reduced stability of B was beneficial when the replication activity of AAB was greater than two times the replication activity of AB. In model 2, the free A subunit is inactive for some number of iterations before it re-creates the B subunit. A re-creates the B subunit with an equal chance of creating B or B', where B' is a mutant that increases AB' replicator activity relative to AB. In simulations, at moderate number of iterations (< 15), a shorter survival time for B is beneficial when the stability of B is greater than the inactive time of A. The results are consistent with the hypothesis that reduced stability for a replicator subunit can be advantageous under appropriate conditions.

生命起源的几个模型涉及到能够自我复制的分子,例如由RNA、DNA或氨基酸组成的自我复制聚合物。在这里,我们考虑一个由a和b两个亚基组成的假设复制子(AB)。在指定的假设条件下,用Python和C编程语言编写的程序将AB复制子的丰度建模为复制周期(迭代)的函数。两个非排他模型描述了B相对于a的稳定性降低如何通过产生自由的a亚基而对复制子活性和/或进化具有优势。在模型1中,自由的A亚基与AB复制子相关联,以创建具有更大活性的AAB复制子。在模拟中,当AAB的复制活性大于AB的复制活性的两倍时,降低B的稳定性是有益的。在模型2中,在重新创建B亚基之前,自由的A亚基在一定次数的迭代中处于非活性状态。A以相同的机会重建B亚基,产生B或B',其中B'是相对于AB增加AB'复制子活性的突变体。在模拟中,在中等迭代次数(< 15)下,当B的稳定性大于A的失活时间时,较短的B存活时间是有益的。结果与假设一致,即在适当的条件下,降低复制子亚基的稳定性可能是有利的。
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引用次数: 2
The Tangled Tree: a Radical New History of Life by David Quammen, Simon & Schuster, 2018. 纠结之树:一部激进的生命新史》,大卫-夸门著,西蒙与舒斯特出版社,2018 年。
IF 2 4区 物理与天体物理 Q2 Agricultural and Biological Sciences Pub Date : 2018-09-01 Epub Date: 2018-10-27 DOI: 10.1007/s11084-018-9566-5
Peter R Bahn

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引用次数: 1
"Man and his Mission". "人与使命
IF 2 4区 物理与天体物理 Q2 Agricultural and Biological Sciences Pub Date : 2018-09-01 DOI: 10.1007/s11084-018-9565-6
Alan W Schwartz

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引用次数: 0
Water near its Supercritical Point and at Alkaline pH for the Production of Ferric Oxides and Silicates in Anoxic Conditions. A New Hypothesis for the Synthesis of Minerals Observed in Banded Iron Formations and for the Related Geobiotropic Chemistry inside Fluid Inclusions. 在缺氧条件下生成氧化铁和硅酸盐的接近超临界点和碱性 pH 值的水。带状铁地层中观察到的矿物合成及流体包裹体内部相关地质生物化学的新假说。
IF 2 4区 物理与天体物理 Q2 Agricultural and Biological Sciences Pub Date : 2018-09-01 Epub Date: 2018-08-08 DOI: 10.1007/s11084-018-9560-y
Marie-Paule Bassez

An alternative hypothesis for the origin of the banded iron formations and the synthesis of prebiotic molecules is presented here. I show the importance of considering water near its supercritical point and at alkaline pH. It is based on the chemical equation for the anoxic oxidation of ferrous iron into ferric iron at high-subcritical conditions of water and high pH, that I extract from E-pH diagrams drawn for corrosion purposes (Geophysical Research Abstracts Vol 15, EGU2013-22 Bassez 2013, Orig Life Evol Biosph 45(1):5-13, Bassez 2015, Procedia Earth Planet Sci 17, 492-495, Bassez 2017a, Orig Life Evol Biosph 47:453-480, Bassez 2017b). The sudden change in solubility of silica, SiO2, at the critical point of water is also considered. It is shown that under these temperatures and pressures, ferric oxides and ferric silicates can form in anoxic terrains. No FeII oxidation by UV light, neither by oxygen is needed to explain the minerals of the Banded Iron Formations. The intervention of any kind of microorganisms, either sulfate-reducing, or FeII-oxidizing or O2-producing, is not required. The chemical equation for the anoxic oxidation of ferrous iron is applied to the hydrolyses of fayalite, Fe2SiO4 and ferrosilite, FeSiO3. It is shown that the BIF minerals of the Hamersley Group, Western Australia, and the Transvaal Supergroup, South Africa, are those of fayalite and ferrosilite hydrolyses and carbonations. The dissolution of crustal fayalite and ferrosilite during water-rock interaction needs to occur at T&P just below the critical point of water and in a rising water which is undersaturated in SiO2. Minerals of BIFs which can then be ejected at the surface from venting arcs are ferric oxide hydroxides, hematite, FeIII-greenalite, siderite. The greenalite dehydrated product minnesotaite forms when rising water becomes supersaturated in SiO2, as also riebeckite and stilpnomelane. Long lengths of siderite without ferric oxides neither ferric silicates can occur since the exothermic siderite formation is not so much dependent in T&P. It is also shown that the H2 which is released during hydrolysis/oxidation of fayalite/ferrosilite can lead to components of life, such as macromolecules of amino acids which are synthesized from mixtures of (CO, N2, H2O) in Sabatier-Senderens/Fischer-Tropsch & Haber-Bosch reactions or microwave or gamma-ray excitation reactions. I propose that such geobiotropic synthesis may occur inside fluid inclusions of BIFs, in the silica chert, hematite, FeIII-greenalite or siderite. Therefore, the combination of high-subcritical conditions of water, high solubility of SiO2 at these T&P values, formation of CO also at these T&P, high pH and anoxic water, leads to the formation of ferric minerals and prebiotic molecules in the process of geobiotropy.

本文提出了关于带状铁地层起源和前生物分子合成的另一种假设。我说明了考虑接近超临界点和碱性 pH 值的水的重要性。它基于亚铁在水的高次临界状态和高pH值条件下缺氧氧化为铁的化学方程式,我从为腐蚀目的绘制的E-pH图中提取了这一方程式(《地球物理研究文摘》第15卷,EGU2013-22 Bassez 2013, Orig Life Evol Biosph 45(1):5-13, Bassez 2015, Procedia Earth Planet Sci 17, 492-495, Bassez 2017a, Orig Life Evol Biosph 47:453-480, Bassez 2017b)。研究还考虑了二氧化硅(SiO2)在水临界点溶解度的突然变化。研究表明,在这些温度和压力下,缺氧地层中会形成铁氧化物和铁硅酸盐。要解释铁带地层的矿物,既不需要紫外线氧化 FeII,也不需要氧气氧化 FeII。任何类型的微生物,无论是硫酸盐还原微生物、铁Ⅱ氧化微生物还是产氧微生物,都不需要介入。亚铁缺氧氧化的化学方程式适用于费雅石(Fe2SiO4)和铁硅石(FeSiO3)的水解。结果表明,西澳大利亚哈默斯利群和南非特兰士瓦超群的 BIF 矿物是辉绿岩和铁硅质岩水解和碳化的产物。在水与岩石相互作用过程中,地壳中的辉绿岩和铁硅质岩的溶解需要在温度和压力刚好低于水的临界点,以及在二氧化硅饱和度不足的上升水中进行。从喷气弧喷出地表的BIF矿物有氧化铁氢氧化物、赤铁矿、FeⅢ-绿帘石、菱铁矿。绿帘石的脱水产物明尼苏达石在上升的水变成过饱和的二氧化硅时形成,菱铁矿和菱锰矿也是如此。由于菱铁矿的形成放热与 T&P 的关系不大,因此可能会出现既不含铁质氧化物也不含铁质硅酸盐的长菱铁矿。研究还表明,辉绿岩/铁硅酸盐在水解/氧化过程中释放出的 H2 可以产生生命成分,如氨基酸大分子,这些氨基酸是在萨巴蒂埃-桑德伦斯/费舍尔-特罗普什和哈伯-博什反应或微波或伽马射线激发反应中由(CO、N2、H2O)混合物合成的。我提出,这种地质生物合成可能发生在 BIF 的流体包裹体、硅钙钛矿、赤铁矿、FeIII-绿帘石或菱铁矿中。因此,水的高次临界状态、二氧化硅在这些T&P值下的高溶解度、CO在这些T&P值下的形成、高pH值和缺氧水等因素结合在一起,导致在地质生物合成过程中形成铁矿物和前生物分子。
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引用次数: 0
Investigating the Kinetics of Montmorillonite Clay-Catalyzed Conversion of Anthracene to 9,10-Anthraquinone in the Context of Prebiotic Chemistry. 在前生物化学背景下研究蒙脱石粘土催化蒽转化为 9,10-蒽醌的动力学。
IF 2 4区 物理与天体物理 Q2 Agricultural and Biological Sciences Pub Date : 2018-09-01 Epub Date: 2018-09-10 DOI: 10.1007/s11084-018-9562-9
Hope L Juntunen, Lucas J Leinen, Briann K Pitts, Samantha M O'Hanlon, Bethany P Theiling, Laura M Barge, Patrick Videau, Michael O Gaylor

Carbonaceous meteorites contributed polycyclic aromatic hydrocarbons (PAHs) to the organic inventory of the primordial Earth where they may have reacted on catalytic clay mineral surfaces to produce quinones capable of functioning as redox species in emergent biomolecular systems. To address the feasibility of this hypothesis, we assessed the kinetics of anthracene (1) conversion to 9,10-anthraquinone (2) in the presence of montmorillonite clay (MONT) over the temperature range 25 to 250 °C. Apparent rates of conversion were concentration independent and displayed a sigmoidal relationship with temperature, and conversion efficiencies ranged from 0.027 to 0.066%. Conversion was not detectable in the absence of MONT or a sufficiently high oxidation potential (in this case, molecular oxygen (O2)). These results suggest a scenario in which meteoritic 1 and MONT interactions could yield biologically important quinones in prebiotic planetary environments.

碳质陨石将多环芳烃(PAHs)带到了原始地球的有机库存中,它们可能在催化粘土矿物表面发生反应,生成能够在新出现的生物分子系统中发挥氧化还原作用的醌类物质。为了验证这一假设的可行性,我们评估了在蒙脱石粘土(MONT)存在下,蒽(1)在 25 至 250 °C 温度范围内转化为 9,10-蒽醌(2)的动力学过程。表观转化率与浓度无关,与温度呈正比关系,转化效率为 0.027% 至 0.066%。如果没有 MONT 或足够高的氧化电位(此处为分子氧 (O2)),则无法检测到转化。这些结果表明,在前生物行星环境中,陨石1和MONT的相互作用可以产生具有重要生物学意义的醌。
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引用次数: 4
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Origins of Life and Evolution of Biospheres
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