Pakistan Journal of Biological Sciences最新文献

<b>Background and Objective:</b> Coral reefs on Samalona Island have been under pressure both by natural events and by human (anthropogenic) activities, which have caused area degradation. Research on changes in the area of coral reefs is urgently needed. Hence, the objective of this research was to determine changes in the area of coral reefs from 2017, 2020 and 2023 and to determine the percentage of coral reef cover on Samalona Island. <b>Materials and Methods:</b> The method used to determine changes in the area of coral reef is the (unsupervised) method using Sentinel 2-A imagery and processed with ArcMap 10.8 while determining the percentage of coral reef cover (UPT) and processing with CPCe software. <b>Results:</b> From the results of image processing, it was found that changes occur every 3 years, namely 0.22 Ha, while the results of the accuracy test from the results of image interpretation with a ground check were 87.44%. The results of the percentage of coral reef cover obtained at station I, amounted to 6.99%, at station II 20.55% and at station III, 29.39%. The percentage of coral reef cover on Samalona Island in poor condition refers to the Decree of the Minister of State for the Environment No. 4 of 2001 concerning standard criteria for damage to coral reefs. <b>Conclusion:</b> There is a change in the area of coral reefs on Samalona Island which is heading to a damaged or declining condition every three years from 2017, 2020 to 2023.

<b>Background and Objective:</b> <i>Schleichera oleosa</i> (Sapindaceae) has been reported to be useful in traditional medicine and it has some potential pharmacological activities, such as anticancer, antioxidant and antimicrobial activities. This study aimed to assess its safety to provide complete data required for the development of <i>S. oleosa</i> as herbal medicine. <b>Materials and Methods:</b> The safety assessment of the extract was carried out by testing acute and subchronic toxicity in mice (male and female) and rats (male and female), respectively. The doses used in the acute toxicity test were 1000, 2000, 3000, 4000 and 5000 mg kg¹ of body weight and those in the subchronic treatment were 100, 200 and 400 mg kg¹ of body weight. <b>Results:</b> In the acute toxicity test, the <i>S. oleosa</i> leaf extract at all doses indicated that the LD₅₀ value of the extract was higher than 5000 mg kg¹ b.wt., which suggested that this extract is practically non-toxic according to the toxicity criteria. Furthermore, the subchronic toxicity test found that the administration of the extract to male and female rats at a daily dose of 100 and 200 mg kg¹ b.wt., for 90 days did not cause any significant change in blood haematology, blood biochemistry and histopathological picture of liver, kidney, heart, lymph and lung. Despite there being a significant increase in white blood counts, long-term use of the <i>S. oleosa</i> leaf extract is relatively safe. <b>Conclusion:</b> The results provided evidence regarding the potential of <i>S. oleosa</i> leaves to be used as herbal medicine. However, further research needs to be done to verify that activity and its safety in long-term use.

<b>Background and Objective:</b> Heavy metals are one of the most worrisome pollutants due to their toxicity. Prolonged exposure to heavy metals and their accumulation and biomagnification properties adversely affect aquatic biota and human health. The ability of microorganisms to bioremediate heavy metals into non-toxic forms is one solution. The research aims of the study were to find biofilm-forming heavy metal-resistant bacteria isolated from the waters of the Bungus Samudra Fishery Port (PPS), Padang City. <b>Materials and Methods:</b> This study used a marine agar medium modified with the addition of K₂Cr₂O₇, Pb(NO₃)₂ and CdSO₄•H₂O, Marine Broth medium and Congo Red Agar medium. The research methods include, the isolation of bacteria, isolate resistance test to heavy metals, testing the ability of isolates to form biofilms and determine the ability of isolates to reduce heavy metals. Furthermore, molecular identification of bacterial isolates was carried out to determine the type of species. <b>Results:</b> Five heavy metal-resistant bacterial isolates were found that were able to form biofilms, namely isolates B3Cd, B5Cr, B7Pb, B6Pb and B3Pb. The five isolates were able to reduce heavy metal content by 38.67-61.191%. Identification of the best bacterial isolates on each heavy metal tested, namely B3Cd, B5Cr and B7Pb, respectively, showed the type of <i>Acinetobacter schindleri</i>, <i>Acinetobacter</i> sp. and <i>Bacillus</i> sp. <b>Conclusion:</b> These three selected potential isolates can be used as bioremediation agents in metal-polluted waters in the future.

<b>Background and Objective:</b> Celiac disease (CD) is an autoimmune condition characterized by immune responses to gluten. The reported prevalence of CD has increased globally due to improved screening and diagnostic techniques, however, there is significant global variation in methods of diagnosis and follow-up. A new immunostatistical equation that determines the values of two types of antibodies using the total IgA test. <b>Materials and Methods:</b> Only 70 blood samples were taken from people who had celiac disease or were suspected of having it, with ages ranging from 5 to 40 years and they were separated into two groups. The first group contained 40 people of both sexes who had previously been diagnosed with celiac disease, while the second group included 30 individuals of both sexes, with ages ranging from 5 to 35 years, who were suspected of having celiac disease due to the appearance of some clinical symptoms. The control group also included 30 blood samples from healthy individuals of both sexes, with ages ranging from 5 to 40 years. Total IgA antibody tTG/IgA and DGP/IgA levels were estimated for all study samples. <b>Results:</b> By using a regression coefficient test the results showed the percentage of the effect of total IgA on tTG/IgA, DGP/IgA amounted to 11 and 25%, respectively, as shown by the value of the coefficient of clarifications (R²) in patients with CD. On the other hand, The percentage of the effect of total IgA on tTG/IgA and DGP/IgA amounted to 11, 14%, respectively, as shown by the value of the coefficient of clarifications (R²) in patients with suspected CD in p<u><</u>0.05. The results of the study were revealed and through the regression coefficient, four new immunostatistical equations were mathematically derived that give the value of tTG/IgA and DGP/IgA based solely on the total IgA test in the laboratory. <b>Conclusion:</b> By adopting one laboratory test which determines total IgA, the study concluded four new immunostatistical equations that will help academic researchers and attending physicians to diagnose celiac disease in addition to following up on patient's adherence to a gluten-free diet.

<b>Background and Objective:</b> Typically, free-living amoebae, members of the genus <i>Acanthamoeba</i> can exist in a range of biological niches, such as fresh and brackish water, filters for heating, soil, airborne dust, ventilation, in addition to air conditioning, as well as pools and hot tubs. On rare occasions, these can be linked to infections of the central nervous system in both people in addition to animals. This study aimed to identify the cause of rats' death by isolating and identifying <i>Acanthamoeba</i> sp., from the ovary of Sprague-Dawley rats. <b>Materials and Methods:</b> An amoeba was identified and cultured from the ovary of Sprague-Dawley rats that succumbed to an amoebic illness. Considering culture attributes, growth shape and immunofluorescence measures, <i>Acanthamoeba</i> sp., was determined as the infecting amoeba. <b>Results:</b> <i>Acanthamoeba</i> sp., the contaminating single adaptable cell, was discovered. Furthermore, by sequencing a symptomatic part of the atomic little subunit ribosomal RNA gene to recognize the one-celled critter as <i>Acanthamoeba</i> sp., <b>Conclusion:</b> An <i>Acanthamoeba</i> strain was demonstrated that has a wide range of genotypes and is capable of infecting people and other species can also infect rats fatally.

<b>Background and Objective:</b> Indonesia consists of various ethnic groups with diverse cultures. However, research on allele frequencies and genetic variations of each ethnic group in Indonesia has not been well established. Therefore, a study was conducted on 13 STR loci panels to analyze the mentawai population as an enhancement of the Indonesian population's genetic data library and genetic variation. Mentawai is one of the Indonesian tribes who live on Mentawai Island, West Sumatera. <b>Materials and Methods:</b> The PrepFiler kit to extract DNA from blood and the GlobalFiler kit for amplifying the 13 loci were used. The genetic analyzer ABI PRISM 3500 was used to detect PCR products. Data were processed and analyzed by EasyDNA and FORSTAT software. <b>Results:</b> The allele frequency data for 13 autosomal loci in Mentawai populations were obtained. Expected heterozygosity was found with a minimum of 0.607 for TPOX and a maximum of 0.866 for FGA. Power of discrimination (PD) values ranges from TPOX (0.792) to FGA (0.968). Polymorphic information content (PIC) values for all loci were high, ranging from 0.642 for TPOX to 0.921 for vWA. Three off-ladder alleles in these findings were detected. Allele 6.3 at the TH01 loci and allele 14.2 at the D18S51 loci are exquisite. The mean expected heterozygosity and mean power of discrimination value across the 13 loci were 75.9 and 90.1%, indicating striking gene diversity. <b>Conclusion:</b> These 13 STR loci can be used for population genetic studies and forensic identification.

<b>Background and Objective:</b> The emergence of antibiotic resistance is a primary global health concern. As a result, there is an urgent need for new strategies to combat antibiotic-resistant bacteria. One of these essential strategies is the combination of medicinal plants and antibiotics as an alternative to using antibiotics alone which was the objective of this article. <b>Materials and Methods:</b> Nine plant materials were collected from different Egypt localities and then extracted by water. Water extracts were filtered and added with Mueller-Hinton agar during preparation. Nine test bacteria and 13 standard antibiotics were used in the disc diffusion sensitivity method. <b>Results:</b> The activity of Amikacin was increased when combined with most different plant extracts against <i>Escherichia coli</i> while antagonistic against <i>Pseudomonas aeruginosa</i>. Aztreonam, Ceftriaxone, Gentamicin and Nalidixic acid antibiotics showed antagonistic or indifferent effects when combined with most different plant extracts against <i>E. coli</i>, <i>Klebsiella pneumonia</i> and <i>P. aeruginosa</i>. The synergistic effect was achieved in Aztreonam when combined with all plant extracts, while Nalidixic acid showed antagonistic when combined with most plant extracts against <i>Proteus mirabilis</i>. The antagonistic effect was achieved in Aztreonam, Ceftriaxone and Nalidixic acid when combined with <i>Achillea fragrantissima</i>, <i>Artemisia monosperma</i> and <i>Leptadenia pyrotechnica</i>, also Aztreonam with <i>Lycium shawii</i> extract against <i>Salmonella typhimurium</i>. The <i>A. fragrantissima</i> and <i>A. monosperma</i> increase the activity of Novobiocin and Vancomycin against <i>Bacillus cereus</i> and Ampicillin and Cefazolin against <i>Staphylococcus aureus</i> but Novobiocin activity increased with most plant extracts against <i>S. aureus</i>. <b>Conclusion:</b> The combinations of antibiotics with the extracts of medicinal plants displayed varying degrees of effects, synergistic, antagonistic and indifferent according to antibiotic type, plant extract and test organism.

<b>Background and Objective:</b> <i> Curcuma longa</i> L. rhizomes are the source of many bioactive compounds such as antitumor, antidepressant, antibacterial, anti-aging and antidiabetic. Due to the growing problem of antibiotic-resistant bacteria, it is necessary to find new sources of antibiotics. This research aimed to investigate the antibacterial activity of ethanolic <i>Curcuma longa</i> L. rhizomes extract against <i>Proteus mirabilis, Acinetobacter baumannii</i> and Multidrug-Resistant <i>Klebsiella pneumoniae</i> (MDR-K). <b>Materials and Methods:</b> Dry <i>Curcuma longa</i> L. rhizomes were extracted with ethanol. The agar diffusion method was used as the primary screening of antibacterial activity determination. The broth dilution method was used to measure the MIC and MIC of the extract. <b>Results:</b> It presented the largest diameter of the inhibition zone at 0.9 mm against <i>Proteus mirabilis</i>, followed by 0.8 mm against MDR-K. The lowest MIC and MBC values were at 0.048 and 0.39 mg mL¹ against <i>Proteus mirabilis</i>, followed by 0.195 and 6.25 mg mL¹ against MDR-K. The ethanolic <i>Curcuma longa</i> L. rhizomes extract did not affect <i>Acinetobacter baumannii</i>. <b>Conclusion:</b> The new finding of this research was that the ethanolic extract from <i>Curcuma longa</i> L. rhizomes can eliminate <i>Proteus mirabilis</i> and MDR-K that can be applied to treating antibiotic-resistant bacterial infectious diseases in the hospital.

<b>Background and Objective:</b> Local micro organism (LMO) is the result of the fermentation of various mixtures of organic matter. One of the organic materials used, based on the local wisdom of West Sumatra, is tapai (fermented Cassava), which is used as a bio activator in the manufacture of organic fertilizer. The research aims to produce organic fertilizers that meet national quality standards in terms of the physical and chemical quality of fertilizers as well as to determine the diversity of bacteria in bio activators through next-generation sequencing analysis. <b>Materials and Methods:</b> The organic ingredients for bio activators, cow feces as basic fertilizer ingredients, materials for analyzing bacterial diversity, LMO gDNA was extracted using ZymoBIOMICS DNA Miniprep Kit DNA and sequenced using Oxford Nanopore Technology. <b>Results:</b> On a scale of 1-3, the physical quality of organic fertilizers had an average value of 2.58 for smell, 2.83 for texture and 2.58 for color. The chemical quality of organic fertilizers is C-organic (23.56%), nitrogen (1.60%), carbon and nitrogen ratio (14.75%), phosphate (0.47%) and potassium (0.64%). The results of the analysis of bacteria on the bioactivator consisted of 7 phyla, 9 families, 45 genres and 297 species. The most common species is <i>Lentilactobacillus hilgardii</i> (62%). <b>Conclusion:</b> The organic fertilizer produced using the mole tapai bio activator complies with Indonesian national standard 19-7030-2004 based on physical and chemical parameters. The type of bacteria that dominates the bioactivator is the lactic acid bacteria group, which reaches 90%.