Pub Date : 2026-01-15DOI: 10.3390/pharmaceutics18010111
Yuchen Zhao, Danmei Bai, Boyang Yang, Tiannuo Wu, Guangsheng Wu, Tiantian Ye, Shujun Wang
Background/Objectives: The high volatility of volatile drugs significantly restricts their clinical applicability. Although excipients capable of strong interactions can reduce volatilization, conventional screening methods rely on empirical trial-and-error, resulting in low efficiency and high resource consumption. To address this limitation, this study introduces an artificial intelligence (AI)-driven strategy for screening drug-excipient interactions. Using d-borneol as a model drug, this approach aims to efficiently identify strongly interacting excipients and develop stable nano-formulations. Methods: High-throughput simulations were performed using the Protenix structure prediction model to evaluate interactions between d-borneol and 472 FDA-approved excipients. The top 50 candidate excipients were selected based on these simu-lations. Molecular docking and stability experiments were conducted to validate the predictions. Results: Molecular docking and stability experiments confirmed the consistency between predicted and experimental results, validating the model's reliability. Among the candidates, soybean phospholipid (PC) was identified as the optimal excipient. A lyophilized liposomal formulation prepared with PC significantly suppressed the volatilization of d-borneol and improved both thermal and storage stability. Mechanistic investigations indicated that d-borneol stably incorporates into the hydro-phobic region of phospholipids, enhancing membrane ordering via hydrophobic interactions without disturbing the polar headgroups. Conclusions: This study represents the first application of a structure prediction model to excipient screening for volatile drugs. It successfully addresses the stability challenges associated with d-borneol and offers a new paradigm for developing nano-formulations for volatile pharmaceuticals.
{"title":"Structure-Based Prediction of Molecular Interactions for Stabilizing Volatile Drugs.","authors":"Yuchen Zhao, Danmei Bai, Boyang Yang, Tiannuo Wu, Guangsheng Wu, Tiantian Ye, Shujun Wang","doi":"10.3390/pharmaceutics18010111","DOIUrl":"10.3390/pharmaceutics18010111","url":null,"abstract":"<p><p><b>Background/Objectives</b>: The high volatility of volatile drugs significantly restricts their clinical applicability. Although excipients capable of strong interactions can reduce volatilization, conventional screening methods rely on empirical trial-and-error, resulting in low efficiency and high resource consumption. To address this limitation, this study introduces an artificial intelligence (AI)-driven strategy for screening drug-excipient interactions. Using d-borneol as a model drug, this approach aims to efficiently identify strongly interacting excipients and develop stable nano-formulations. <b>Methods</b>: High-throughput simulations were performed using the Protenix structure prediction model to evaluate interactions between d-borneol and 472 FDA-approved excipients. The top 50 candidate excipients were selected based on these simu-lations. Molecular docking and stability experiments were conducted to validate the predictions. <b>Results</b>: Molecular docking and stability experiments confirmed the consistency between predicted and experimental results, validating the model's reliability. Among the candidates, soybean phospholipid (PC) was identified as the optimal excipient. A lyophilized liposomal formulation prepared with PC significantly suppressed the volatilization of d-borneol and improved both thermal and storage stability. Mechanistic investigations indicated that d-borneol stably incorporates into the hydro-phobic region of phospholipids, enhancing membrane ordering via hydrophobic interactions without disturbing the polar headgroups. <b>Conclusions</b>: This study represents the first application of a structure prediction model to excipient screening for volatile drugs. It successfully addresses the stability challenges associated with d-borneol and offers a new paradigm for developing nano-formulations for volatile pharmaceuticals.</p>","PeriodicalId":19894,"journal":{"name":"Pharmaceutics","volume":"18 1","pages":""},"PeriodicalIF":5.5,"publicationDate":"2026-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12845388/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146065603","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-15DOI: 10.3390/pharmaceutics18010115
Toshihiko Tashima
Epigenetics involves heritable changes in gene expression-such as DNA methylation (5-methylcytosine; 5mC), histone modifications, and regulation by non-coding RNAs at the mRNA translation level-without altering the underlying DNA sequence. As targeting these mechanisms enables intervention at the root cause of disease rather than the symptoms alone, epigenetics has become a rapidly advancing field in pharmaceutical sciences. Various epigenetic modulators, including histone deacetylase (HDAC) inhibitors, histone acetyltransferase (HAT) inhibitors, DNA methyltransferase (DNMT) inhibitors, and microRNAs (miRNAs), have been developed, and some have already been approved for cancer therapy. However, these agents often face significant challenges such as poor membrane permeability, enzymatic instability, and suboptimal biodistribution. Incorporating functionalized accessory units-serving as vectors (e.g., transporter recognition units, cell-penetrating peptides, tumor-homing peptides, monoclonal antibodies) or as carriers (e.g., monoclonal antibodies, nanoparticles)-into epigenetic modulators may help overcome these delivery barriers. In this narrative review, I discuss the potential and advantages of effective non-invasive delivery of epigenetic drugs using such functionalized accessory unit conjugates.
{"title":"Effective Non-Invasive Delivery of Epigenetic Drugs Using Functionalized Accessory Unit Conjugates.","authors":"Toshihiko Tashima","doi":"10.3390/pharmaceutics18010115","DOIUrl":"10.3390/pharmaceutics18010115","url":null,"abstract":"<p><p>Epigenetics involves heritable changes in gene expression-such as DNA methylation (5-methylcytosine; 5mC), histone modifications, and regulation by non-coding RNAs at the mRNA translation level-without altering the underlying DNA sequence. As targeting these mechanisms enables intervention at the root cause of disease rather than the symptoms alone, epigenetics has become a rapidly advancing field in pharmaceutical sciences. Various epigenetic modulators, including histone deacetylase (HDAC) inhibitors, histone acetyltransferase (HAT) inhibitors, DNA methyltransferase (DNMT) inhibitors, and microRNAs (miRNAs), have been developed, and some have already been approved for cancer therapy. However, these agents often face significant challenges such as poor membrane permeability, enzymatic instability, and suboptimal biodistribution. Incorporating functionalized accessory units-serving as vectors (e.g., transporter recognition units, cell-penetrating peptides, tumor-homing peptides, monoclonal antibodies) or as carriers (e.g., monoclonal antibodies, nanoparticles)-into epigenetic modulators may help overcome these delivery barriers. In this narrative review, I discuss the potential and advantages of effective non-invasive delivery of epigenetic drugs using such functionalized accessory unit conjugates.</p>","PeriodicalId":19894,"journal":{"name":"Pharmaceutics","volume":"18 1","pages":""},"PeriodicalIF":5.5,"publicationDate":"2026-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12844687/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146065917","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-15DOI: 10.3390/pharmaceutics18010112
Yicui Zhang, Yao Liu, Hua He, Kun Hao
Background/Objectives: Digoxin is a cardiotonic agent with a narrow therapeutic window and a high risk of toxicity. The current clinical use is based on an empirically FDA-recommended regimen which has wide dosing ranges, introducing the risk of inappropriate dosing and related adverse events. This study aims to develop a physiologically based pharmacokinetic (PBPK) model to characterize digoxin pharmacokinetics in adult and pediatric patients with heart failure, and then to evaluate the FDA-recommended regimen. Methods: The PBPK model was initially developed in healthy adults using PK-Sim®. Then, it was translated to adults with heart failure by incorporating disease factors. Next, it was further translated to pediatrics by scaling age-related parameters. Finally, through two-step translations, the model was used to evaluate current dosing regimens to inform safety and effectiveness based on observing predicted trough concentrations at a steady state. Results: This PBPK model has strong predicting ability, where observed concentrations and key PK metrics (Cmax, AUC0-t) were within 0.5-2.0-fold of predictions in healthy adults, adults with heart failure, neonates, and infants. The model prediction work on the evaluation of recommended dosing regimens from the FDA shows that the current regimen may not achieve the lowest boundary of the therapeutic window (0.5-2 ng/mL) in neonates (0-30 days), whereas infants (1-2 months) and children (<18 years) are generally good within it. Conclusions: This PBPK model explained major physiological and pathological contributors to differences in digoxin pharmacokinetics across populations and showed good performance in pediatric extrapolation. It also pointed out the shortage of empirical dosing regimens for such a drug with a narrow therapeutic window. The model may assist in optimizing the pediatric dosing strategies of digoxin, and suggests that current neonatal dosing regimens need refinement.
{"title":"Physiologically Based Pharmacokinetic Modeling of Digoxin in Adult and Pediatric Patients with Heart Failure.","authors":"Yicui Zhang, Yao Liu, Hua He, Kun Hao","doi":"10.3390/pharmaceutics18010112","DOIUrl":"10.3390/pharmaceutics18010112","url":null,"abstract":"<p><p><b>Background/Objectives</b>: Digoxin is a cardiotonic agent with a narrow therapeutic window and a high risk of toxicity. The current clinical use is based on an empirically FDA-recommended regimen which has wide dosing ranges, introducing the risk of inappropriate dosing and related adverse events. This study aims to develop a physiologically based pharmacokinetic (PBPK) model to characterize digoxin pharmacokinetics in adult and pediatric patients with heart failure, and then to evaluate the FDA-recommended regimen. <b>Methods</b>: The PBPK model was initially developed in healthy adults using PK-Sim<sup>®</sup>. Then, it was translated to adults with heart failure by incorporating disease factors. Next, it was further translated to pediatrics by scaling age-related parameters. Finally, through two-step translations, the model was used to evaluate current dosing regimens to inform safety and effectiveness based on observing predicted trough concentrations at a steady state. <b>Results</b>: This PBPK model has strong predicting ability, where observed concentrations and key PK metrics (C<sub>max</sub>, AUC<sub>0-t</sub>) were within 0.5-2.0-fold of predictions in healthy adults, adults with heart failure, neonates, and infants. The model prediction work on the evaluation of recommended dosing regimens from the FDA shows that the current regimen may not achieve the lowest boundary of the therapeutic window (0.5-2 ng/mL) in neonates (0-30 days), whereas infants (1-2 months) and children (<18 years) are generally good within it. <b>Conclusions</b>: This PBPK model explained major physiological and pathological contributors to differences in digoxin pharmacokinetics across populations and showed good performance in pediatric extrapolation. It also pointed out the shortage of empirical dosing regimens for such a drug with a narrow therapeutic window. The model may assist in optimizing the pediatric dosing strategies of digoxin, and suggests that current neonatal dosing regimens need refinement.</p>","PeriodicalId":19894,"journal":{"name":"Pharmaceutics","volume":"18 1","pages":""},"PeriodicalIF":5.5,"publicationDate":"2026-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12845265/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146066079","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-15DOI: 10.3390/pharmaceutics18010109
Daniela Pastorim Vaiss, Débora Cristine Chrisostomo Dias, Virginia Campello Yurgel, Fernanda Beatriz Venturi Araujo, Ledilege Cucco Porto, Janaina Fernandes de Medeiros Burkert, Marcelo Augusto Germani Marinho, Daza de Moraes Vaz Batista Filgueira, Cristiana Lima Dora
Background: Nanotechnology provides innovative strategies to enhance drug delivery and therapeutic efficacy through advanced nanocarrier systems. Objectives: This study aimed to develop and optimize a nanostructured lipid carrier (NLC) co-encapsulating curcumin (CUR) and resveratrol (RESV) using a fractional factorial design to develop a topical formulation with antioxidant and anti-inflammatory properties. Methods: NLCs were produced via hot emulsification followed by high-pressure homogenization, and their physicochemical characteristics, drug content, stability, release profile, antioxidant activity, skin delivery, and cellular compatibility were evaluated. Results: The optimized formulation exhibited an average particle size of approximately 300 nm, a polydispersity index below 0.3, and high drug loading for both compounds. Stability studies over 90 days revealed no significant changes in physicochemical parameters, confirming the formulation's robustness. In vitro release assays demonstrated sustained release of both actives, with 58.6 ± 2.9% of CUR and 97 ± 3% of RESV released after 72 h. Antioxidant activity, assessed by the DPPH and ABTS assays, showed concentration-dependent radical-scavenging effects, indicating antioxidant potential. Skin permeation/retention experiments using porcine skin showed enhanced retention of CUR and RESV within the tissue, with no detectable permeation, indicating suitability for topical delivery. In addition, in vitro cell assays using human keratinocytes showed concentration-dependent responses and acceptable cellular compatibility. Conclusions: Overall, this study demonstrates the successful application of nanotechnology and experimental design to develop stable and efficient lipid-based nanocarriers containing natural polyphenol for topical therapy targeting oxidative and inflammatory skin disorders.
{"title":"Design and Factorial Optimization of Curcumin and Resveratrol Co-Loaded Lipid Nanocarriers for Topical Delivery.","authors":"Daniela Pastorim Vaiss, Débora Cristine Chrisostomo Dias, Virginia Campello Yurgel, Fernanda Beatriz Venturi Araujo, Ledilege Cucco Porto, Janaina Fernandes de Medeiros Burkert, Marcelo Augusto Germani Marinho, Daza de Moraes Vaz Batista Filgueira, Cristiana Lima Dora","doi":"10.3390/pharmaceutics18010109","DOIUrl":"10.3390/pharmaceutics18010109","url":null,"abstract":"<p><p><b>Background</b>: Nanotechnology provides innovative strategies to enhance drug delivery and therapeutic efficacy through advanced nanocarrier systems. <b>Objectives</b>: This study aimed to develop and optimize a nanostructured lipid carrier (NLC) co-encapsulating curcumin (CUR) and resveratrol (RESV) using a fractional factorial design to develop a topical formulation with antioxidant and anti-inflammatory properties. <b>Methods:</b> NLCs were produced via hot emulsification followed by high-pressure homogenization, and their physicochemical characteristics, drug content, stability, release profile, antioxidant activity, skin delivery, and cellular compatibility were evaluated. <b>Results:</b> The optimized formulation exhibited an average particle size of approximately 300 nm, a polydispersity index below 0.3, and high drug loading for both compounds. Stability studies over 90 days revealed no significant changes in physicochemical parameters, confirming the formulation's robustness. In vitro release assays demonstrated sustained release of both actives, with 58.6 ± 2.9% of CUR and 97 ± 3% of RESV released after 72 h. Antioxidant activity, assessed by the DPPH and ABTS assays, showed concentration-dependent radical-scavenging effects, indicating antioxidant potential. Skin permeation/retention experiments using porcine skin showed enhanced retention of CUR and RESV within the tissue, with no detectable permeation, indicating suitability for topical delivery. In addition, in vitro cell assays using human keratinocytes showed concentration-dependent responses and acceptable cellular compatibility. <b>Conclusions:</b> Overall, this study demonstrates the successful application of nanotechnology and experimental design to develop stable and efficient lipid-based nanocarriers containing natural polyphenol for topical therapy targeting oxidative and inflammatory skin disorders.</p>","PeriodicalId":19894,"journal":{"name":"Pharmaceutics","volume":"18 1","pages":""},"PeriodicalIF":5.5,"publicationDate":"2026-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12845360/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146065875","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-14DOI: 10.3390/pharmaceutics18010108
Maria Nikou, Maria Chountoulesi, Stergios Pispas, Natassa Pippa
In this article, a systematic review and analysis of the present literature is conducted, regarding the excipients present in dry powder inhaler formulations. Until now, there has been no list of excipients recorded, specifically for DPIs, with the number of approved excipients for pulmonary delivery being restricted, despite their choice as a pivotal step for the formulating process. Understanding the DPI formulations, physicochemical characteristics, efficiency, and release profiles, demonstrated in detail here, could contribute to their application in future studies and be a useful research tool in the choice of excipients in the field of inhalation technology and specifically DPIs.
{"title":"From Classics to Nano-Excipients and Biopolymers: Pulmonary Drug Delivery Formulations.","authors":"Maria Nikou, Maria Chountoulesi, Stergios Pispas, Natassa Pippa","doi":"10.3390/pharmaceutics18010108","DOIUrl":"10.3390/pharmaceutics18010108","url":null,"abstract":"<p><p>In this article, a systematic review and analysis of the present literature is conducted, regarding the excipients present in dry powder inhaler formulations. Until now, there has been no list of excipients recorded, specifically for DPIs, with the number of approved excipients for pulmonary delivery being restricted, despite their choice as a pivotal step for the formulating process. Understanding the DPI formulations, physicochemical characteristics, efficiency, and release profiles, demonstrated in detail here, could contribute to their application in future studies and be a useful research tool in the choice of excipients in the field of inhalation technology and specifically DPIs.</p>","PeriodicalId":19894,"journal":{"name":"Pharmaceutics","volume":"18 1","pages":""},"PeriodicalIF":5.5,"publicationDate":"2026-01-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12845390/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146065928","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: Drug delivery against ciprofloxacin-resistant microbial strains is one of the most challenging areas of research in the pharmaceutical industry. The broad-spectrum antibiotic ciprofloxacin often faces challenges due to its poor bioavailability; thus, the activity of this drug is generally compromised against resistant strains. Traditional drug delivery systems, such as liposomes, are utilized to address this issue; however, niosomes have surfaced as a promising successor to their liposomal counterparts due to their superior attributes, such as enhanced stability and reduced toxicity. However, owing to environmental and toxicological concerns over commonly used chemical surfactants in niosomes, there is a pressing need to explore greener and safer alternatives. This study is focused on the application of sophorolipids (SLs), a biosurfactant that is synthesized by the yeast Starmerella bombicola, as a vesicular assembly for ciprofloxacin encapsulation. Methods: The SL-based niosomal formulation was characterized for particle size, zeta potential, and polydispersity index (PDI), while transmission electron microscopy (TEM) was employed to determine the morphology of niosomes. Agar well diffusion, broth dilution, and biofilm inhibition assays were performed to assess efficacy. Results: The niosomal formulations were successfully prepared; among them, the (+)vely charged formulation exhibited a more organized morphology, and their size and zeta potential values were found to be around ~371 nm and 63 mV for the blank niosomes (without the loaded drug) and ~269 nm and 51 mV for the ciprofloxacin-loaded niosomes. The minimum inhibitory concentration and biofilm inhibitory concentration against the MRSA strain were 5 µg/mL and 25 µg/mL, respectively, for the ciprofloxacin-loaded, (+)vely charged SL niosomes-for free ciprofloxacin these values were 40 µg/mL and 100 µg/mL-presenting remarkable potential for biofilm inhibition. Conclusion: This study highlights the promising therapeutic potential of SL-based ciprofloxacin-loaded niosomes against the emerging health threat of the MRSA strain.
{"title":"Enhanced Antimicrobial Activity of Ciprofloxacin Encapsulated in Sophorolipid-Based Nano-Assemblies Against Ciprofloxacin-/Methicillin-Resistant <i>Staphylococcus aureus</i> (MRSA).","authors":"Ankita Jain, Navjot Kaur, Shobit Attery, Hemraj Nandanwar, Mani Shankar Bhattacharyya","doi":"10.3390/pharmaceutics18010104","DOIUrl":"10.3390/pharmaceutics18010104","url":null,"abstract":"<p><p><b>Background:</b> Drug delivery against ciprofloxacin-resistant microbial strains is one of the most challenging areas of research in the pharmaceutical industry. The broad-spectrum antibiotic ciprofloxacin often faces challenges due to its poor bioavailability; thus, the activity of this drug is generally compromised against resistant strains. Traditional drug delivery systems, such as liposomes, are utilized to address this issue; however, niosomes have surfaced as a promising successor to their liposomal counterparts due to their superior attributes, such as enhanced stability and reduced toxicity. However, owing to environmental and toxicological concerns over commonly used chemical surfactants in niosomes, there is a pressing need to explore greener and safer alternatives. This study is focused on the application of sophorolipids (SLs), a biosurfactant that is synthesized by the yeast <i>Starmerella bombicola</i>, as a vesicular assembly for ciprofloxacin encapsulation. <b>Methods:</b> The SL-based niosomal formulation was characterized for particle size, zeta potential, and polydispersity index (PDI), while transmission electron microscopy (TEM) was employed to determine the morphology of niosomes. Agar well diffusion, broth dilution, and biofilm inhibition assays were performed to assess efficacy. <b>Results:</b> The niosomal formulations were successfully prepared; among them, the (+)vely charged formulation exhibited a more organized morphology, and their size and zeta potential values were found to be around ~371 nm and 63 mV for the blank niosomes (without the loaded drug) and ~269 nm and 51 mV for the ciprofloxacin-loaded niosomes. The minimum inhibitory concentration and biofilm inhibitory concentration against the MRSA strain were 5 µg/mL and 25 µg/mL, respectively, for the ciprofloxacin-loaded, (+)vely charged SL niosomes-for free ciprofloxacin these values were 40 µg/mL and 100 µg/mL-presenting remarkable potential for biofilm inhibition. <b>Conclusion:</b> This study highlights the promising therapeutic potential of SL-based ciprofloxacin-loaded niosomes against the emerging health threat of the MRSA strain.</p>","PeriodicalId":19894,"journal":{"name":"Pharmaceutics","volume":"18 1","pages":""},"PeriodicalIF":5.5,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12845106/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146065888","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-13DOI: 10.3390/pharmaceutics18010106
Bharat Kumar Reddy Sanapalli, Christopher R Jones, Vidyasrilekha Sanapalli
The emergence of multidrug-resistant (MDR) bacterial pathogens has heightened the urgency for novel antibacterial agents. The bacterial cell wall usually comprises peptidoglycan, which presents a prime target for antibacterial drug development due to its indispensable role in maintaining cellular integrity. Conventional antibiotics such as β-lactams and glycopeptides hinder peptidoglycan synthesis through competitive binding of penicillin-binding proteins (PBPs) and sequestration of lipid-linked precursor molecules. Nevertheless, prevalent resistance mechanisms including target modification, β-lactamase hydrolysis, and multi-drug efflux pumps have limited their clinical utility. This comprehensive analysis explicates the molecular machinery underlying bacterial cell wall assembly, evaluates both explored and unexplored enzymatic nodes within this pathway, and highlights the transformative impact of high-resolution structural elucidation in accelerating structure-guided drug discovery. Novel targets such as GlmS, GlmM, GlmU, Mur ligases, D,L-transpeptidases are assessed for their inclusiveness for the discovery of next-generation antibiotics. Additionally, cell wall inhibitors are also examined for their mechanisms of action and evolutionary constraints on MDR development. High-resolution crystallographic data provide valuable insights into molecular blueprints for structure-guided optimization of pharmacophores, enhancing binding affinity and circumventing resistance determinants. This review proposes a roadmap for future innovation, advocating for the convergence of computational biology platforms, machine learning-driven compound screening, and nanoscale delivery systems to improve therapeutic efficacy and pharmacokinetics. The synergy of structural insights and cutting-edge technologies offers a multidisciplinary framework for revitalizing the antibacterial arsenal and combating MDR infections efficiently.
多药耐药(MDR)细菌病原体的出现提高了开发新型抗菌药物的紧迫性。细菌细胞壁通常由肽聚糖组成,由于其在维持细胞完整性方面不可或缺的作用,肽聚糖成为抗菌药物开发的主要靶点。传统的抗生素如β-内酰胺和糖肽通过青霉素结合蛋白(PBPs)的竞争性结合和脂质连接前体分子的隔离阻碍肽聚糖的合成。然而,包括靶标修饰、β-内酰胺酶水解和多药外排泵在内的普遍耐药机制限制了它们的临床应用。这项综合分析阐明了细菌细胞壁组装的分子机制,评估了该途径中已探索和未探索的酶节点,并强调了高分辨率结构解析在加速结构引导药物发现方面的变革性影响。新靶点如GlmS, GlmM, GlmU, Mur连接酶,D, l -转肽酶被评估为发现下一代抗生素的包容性。此外,还研究了细胞壁抑制剂的作用机制和对耐多药发展的进化限制。高分辨率晶体学数据为结构导向的药物团优化分子蓝图提供了有价值的见解,增强了结合亲和力并绕过了抗性决定因素。本文提出了未来创新的路线图,倡导计算生物学平台、机器学习驱动的化合物筛选和纳米级给药系统的融合,以提高治疗疗效和药代动力学。结构见解和尖端技术的协同作用为振兴抗菌武器库和有效对抗耐多药感染提供了多学科框架。
{"title":"Targeting Bacterial Cell Wall Synthesis: Structural Insights and Emerging Therapeutic Strategies.","authors":"Bharat Kumar Reddy Sanapalli, Christopher R Jones, Vidyasrilekha Sanapalli","doi":"10.3390/pharmaceutics18010106","DOIUrl":"10.3390/pharmaceutics18010106","url":null,"abstract":"<p><p>The emergence of multidrug-resistant (MDR) bacterial pathogens has heightened the urgency for novel antibacterial agents. The bacterial cell wall usually comprises peptidoglycan, which presents a prime target for antibacterial drug development due to its indispensable role in maintaining cellular integrity. Conventional antibiotics such as β-lactams and glycopeptides hinder peptidoglycan synthesis through competitive binding of penicillin-binding proteins (PBPs) and sequestration of lipid-linked precursor molecules. Nevertheless, prevalent resistance mechanisms including target modification, β-lactamase hydrolysis, and multi-drug efflux pumps have limited their clinical utility. This comprehensive analysis explicates the molecular machinery underlying bacterial cell wall assembly, evaluates both explored and unexplored enzymatic nodes within this pathway, and highlights the transformative impact of high-resolution structural elucidation in accelerating structure-guided drug discovery. Novel targets such as GlmS, GlmM, GlmU, Mur ligases, D,L-transpeptidases are assessed for their inclusiveness for the discovery of next-generation antibiotics. Additionally, cell wall inhibitors are also examined for their mechanisms of action and evolutionary constraints on MDR development. High-resolution crystallographic data provide valuable insights into molecular blueprints for structure-guided optimization of pharmacophores, enhancing binding affinity and circumventing resistance determinants. This review proposes a roadmap for future innovation, advocating for the convergence of computational biology platforms, machine learning-driven compound screening, and nanoscale delivery systems to improve therapeutic efficacy and pharmacokinetics. The synergy of structural insights and cutting-edge technologies offers a multidisciplinary framework for revitalizing the antibacterial arsenal and combating MDR infections efficiently.</p>","PeriodicalId":19894,"journal":{"name":"Pharmaceutics","volume":"18 1","pages":""},"PeriodicalIF":5.5,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12844806/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146065810","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-13DOI: 10.3390/pharmaceutics18010107
Estevan Sonego Zimmermann, Teresa Dalla Costa, Brian Cicali, Mohammed Almoslem, Rodrigo Cristofoletti, Stephan Schmidt
Background/Objectives: Levofloxacin (LVX) is a fluoroquinolone approved for the treatment of bacterial pneumonia, sinusitis, and prostatitis. Emerging in vitro and preclinical evidence suggests that efflux transporters are involved in LVX's target tissue site distribution. Methods: The objective of this research was to characterize tissue exposure using a physiologically based pharmacokinetic (PBPK) model to be able to make more educated choices for optimal doses using target site pharmacokinetics data. Results: The final PBPK model in humans was applied to simulate free target site concentrations of LVX in lung and prostate, linking to minimum inhibitory concentrations (MIC) to assess appropriateness of currently approved dosing regimens for infections in both tissues. The clinical PBPK model was able to reproduce total plasma as well as free lung and prostate exposure of LVX in humans. Efflux transporters participate in LVX distribution to prostatic but not pulmonary tissue. Our results show a good penetration of LVX in both tissues with unbound partition coefficient (Kp,uu) equal to 0.79 and 0.72 for lung and prostate, respectively. Since LVX penetration in lung and prostate is similar, different sensitivities of the pathogens to LVX will dictate the effectiveness of the approved therapeutic regimen in the treatment of bacterial pneumonia, sinusitis, and prostatitis. Conclusions: Our research provides relevant insight into LVX's target site exposure in lung and prostate. When integrated with pathogen-specific susceptibility data, these findings can be applied to refine current dosing regimens and help optimize the pharmacological treatment outcomes.
{"title":"Translational Model to Predict Lung and Prostate Distribution of Levofloxacin in Humans.","authors":"Estevan Sonego Zimmermann, Teresa Dalla Costa, Brian Cicali, Mohammed Almoslem, Rodrigo Cristofoletti, Stephan Schmidt","doi":"10.3390/pharmaceutics18010107","DOIUrl":"10.3390/pharmaceutics18010107","url":null,"abstract":"<p><p><b>Background/Objectives:</b> Levofloxacin (LVX) is a fluoroquinolone approved for the treatment of bacterial pneumonia, sinusitis, and prostatitis. Emerging in vitro and preclinical evidence suggests that efflux transporters are involved in LVX's target tissue site distribution. <b>Methods</b>: The objective of this research was to characterize tissue exposure using a physiologically based pharmacokinetic (PBPK) model to be able to make more educated choices for optimal doses using target site pharmacokinetics data. <b>Results</b>: The final PBPK model in humans was applied to simulate free target site concentrations of LVX in lung and prostate, linking to minimum inhibitory concentrations (MIC) to assess appropriateness of currently approved dosing regimens for infections in both tissues. The clinical PBPK model was able to reproduce total plasma as well as free lung and prostate exposure of LVX in humans. Efflux transporters participate in LVX distribution to prostatic but not pulmonary tissue. Our results show a good penetration of LVX in both tissues with unbound partition coefficient (Kp,uu) equal to 0.79 and 0.72 for lung and prostate, respectively. Since LVX penetration in lung and prostate is similar, different sensitivities of the pathogens to LVX will dictate the effectiveness of the approved therapeutic regimen in the treatment of bacterial pneumonia, sinusitis, and prostatitis. <b>Conclusions</b>: Our research provides relevant insight into LVX's target site exposure in lung and prostate. When integrated with pathogen-specific susceptibility data, these findings can be applied to refine current dosing regimens and help optimize the pharmacological treatment outcomes.</p>","PeriodicalId":19894,"journal":{"name":"Pharmaceutics","volume":"18 1","pages":""},"PeriodicalIF":5.5,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12845130/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146065891","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-13DOI: 10.3390/pharmaceutics18010105
Iria Naveira-Souto, Roger Fabrega Alsina, Elisabet Rosell-Vives, Eloy Pena-Rodríguez, Francisco Fernandez-Campos, Jessica Malavia, Xavier Julia Camprodon, Maximilian Schelden, Nazende Günday-Türeli, Andrés Cruz-Conesa, Maria Lajarin-Reinares
Background: Liposomes are attractive topical carriers, yet translating laboratory fabrication to scalable, well-controlled processes remains challenging. Objectives: We compared three manufacturing methods for diclofenac-loaded liposomes: probe sonication, microfluidic mixing, and a high-turbulence microreactor, under a Quality-by-Design framework. Methods: Differential scanning calorimetry (DSC) was used to define a processing-relevant liquid-crystalline temperature window for the lipid excipients. For sonication scale-up, a Plackett-Burman screening design identified key process factors and supported an energy-density (W·s·L-1) control approach. For microfluidics, the effects of flow-rate ratio (FRR) and total flow rate (TFR) were mapped and optimized using a desirability function. Microreactor trials were performed at elevated throughput. Residual ethanol during post-processing was monitored at-line by Raman spectroscopy calibrated against gas chromatography (GC). Particle size and dispersity were measured by DLS and morphology assessed by cryo-TEM. Results: DSC supported a 70-85 °C processing window. Sonication scale-up using an energy-density target (~11,000 W·s·L-1) reproduced lab-scale quality at 8 L (Z-average ~87-92 nm; PDI 0.16-0.23; %EE 86-94%). Microfluidics optimization selected FRR 3:1/TFR 4 mL·min-1, yielding ~64 nm liposomes with PDI ~0.13 and %EE ~93%. The microreactor achieved ~50 nm liposomes with %EE ~95% at 50 mL·min-1. Cryo-TEM corroborated size trends and showed no evident aggregates. Conclusions: All three routes met topical CQAs (~50-100 nm; PDI ≤ 0.30; high %EE). Method selection should be guided by target size/dispersity and operational constraints: sonication enables energy-based scale-up, microfluidics offers precise size control, and microreactors provide higher throughput.
背景:脂质体是有吸引力的局部载体,但将实验室制造转化为可扩展的,控制良好的过程仍然具有挑战性。目的:在质量设计框架下,我们比较了三种负载双氯芬酸脂质体的生产方法:探针超声、微流体混合和高湍流微反应器。方法:采用差示扫描量热法(DSC)确定脂质辅料加工相关的液晶温度窗。对于超声放大,Plackett-Burman筛选设计确定了关键工艺因素,并支持能量密度(W·s·L-1)控制方法。对于微流体,利用期望函数映射和优化了流量比(FRR)和总流量(TFR)的影响。微反应器试验在高通量下进行。用气相色谱(GC)校准的拉曼光谱法在线监测后处理过程中的残留乙醇。用DLS法测定颗粒大小和分散度,用低温透射电镜观察颗粒形态。结果:DSC支持70-85°C处理窗口。使用能量密度靶(~ 11000 W·s·L-1)进行超声放大,可在8 L (z -平均~87-92 nm; PDI 0.16-0.23; %EE 86-94%)下再现实验室规模的质量。微流控优化选择FRR 3:1/TFR 4 mL·min-1,制得PDI ~0.13, EE % ~93%的~64 nm脂质体。微反应器在50 mL·min-1下可获得~50 nm, EE % ~95%的脂质体。低温透射电镜证实了尺寸趋势,并没有显示明显的聚集。结论:三种途径均满足局部CQAs (~50 ~ 100 nm; PDI≤0.30;高EE %)。方法选择应以目标尺寸/分散性和操作限制为指导:超声可以实现基于能量的放大,微流体提供精确的尺寸控制,微反应器提供更高的吞吐量。
{"title":"Comparative Analysis of Sonication, Microfluidics, and High-Turbulence Microreactors for the Fabrication and Scaling-Up of Diclofenac-Loaded Liposomes.","authors":"Iria Naveira-Souto, Roger Fabrega Alsina, Elisabet Rosell-Vives, Eloy Pena-Rodríguez, Francisco Fernandez-Campos, Jessica Malavia, Xavier Julia Camprodon, Maximilian Schelden, Nazende Günday-Türeli, Andrés Cruz-Conesa, Maria Lajarin-Reinares","doi":"10.3390/pharmaceutics18010105","DOIUrl":"10.3390/pharmaceutics18010105","url":null,"abstract":"<p><p><b>Background</b>: Liposomes are attractive topical carriers, yet translating laboratory fabrication to scalable, well-controlled processes remains challenging. <b>Objectives</b>: We compared three manufacturing methods for diclofenac-loaded liposomes: probe sonication, microfluidic mixing, and a high-turbulence microreactor, under a Quality-by-Design framework. <b>Methods</b>: Differential scanning calorimetry (DSC) was used to define a processing-relevant liquid-crystalline temperature window for the lipid excipients. For sonication scale-up, a Plackett-Burman screening design identified key process factors and supported an energy-density (W·s·L<sup>-1</sup>) control approach. For microfluidics, the effects of flow-rate ratio (FRR) and total flow rate (TFR) were mapped and optimized using a desirability function. Microreactor trials were performed at elevated throughput. Residual ethanol during post-processing was monitored at-line by Raman spectroscopy calibrated against gas chromatography (GC). Particle size and dispersity were measured by DLS and morphology assessed by cryo-TEM. <b>Results</b>: DSC supported a 70-85 °C processing window. Sonication scale-up using an energy-density target (~11,000 W·s·L<sup>-1</sup>) reproduced lab-scale quality at 8 L (Z-average ~87-92 nm; PDI 0.16-0.23; %EE 86-94%). Microfluidics optimization selected FRR 3:1/TFR 4 mL·min<sup>-1</sup>, yielding ~64 nm liposomes with PDI ~0.13 and %EE ~93%. The microreactor achieved ~50 nm liposomes with %EE ~95% at 50 mL·min<sup>-1</sup>. Cryo-TEM corroborated size trends and showed no evident aggregates. <b>Conclusions</b>: All three routes met topical CQAs (~50-100 nm; PDI ≤ 0.30; high %EE). Method selection should be guided by target size/dispersity and operational constraints: sonication enables energy-based scale-up, microfluidics offers precise size control, and microreactors provide higher throughput.</p>","PeriodicalId":19894,"journal":{"name":"Pharmaceutics","volume":"18 1","pages":""},"PeriodicalIF":5.5,"publicationDate":"2026-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12844820/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146065879","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background/objectives: Mathematical modelling provides a quantitative way to describe the fate and action of drugs in the oral cavity, where transport processes are shaped by salivary flow, pellicle formation, biofilm structure and the wash-out effect of gingival crevicular fluid (GCF). Local pharmacokinetics in the mouth differ substantially from systemic models, and therefore a dedicated framework is required. The aim of this work was to present a structured, physiologically based concept that links in vitro release testing with local pharmacokinetics and pharmacodynamics.
Methods: A narrative review with elements of systematic search was conducted in PubMed, Scopus and Web of Science (1980-2025) for publications describing drug release, local PBPK, and PK/PD modelling in the oral cavity. Mathematical formulations were grouped into release kinetics, mini-PBPK transport and local PK/PD relations. Classical models (Higuchi, Korsmeyer-Peppas, Peppas-Sahlin) were integrated with a mini-PBPK structure describing saliva-mucosa-biofilm-pocket interactions.
Results: The combined model captures adsorption to pellicle, diffusion within biofilm and wash-out by GCF. It allows simulation of variable clinical conditions, such as inflammation-related changes in QGCF, and links local exposure to pharmacodynamic outcomes. Case studies with PerioChip®, Arestin®, and Atridox® demonstrate how mechanistic models explain observed therapeutic duration and low-systemic exposure.
Conclusions: The proposed mini-PBPK framework bridges empirical release data and physiological transport in the oral cavity. It supports rational formulation design, optimisation of local dosage, and personalised prediction of drug retention in gingival pockets. This modelling approach can become a practical tool for the development of dental biomaterials and subgingival therapies.
背景/目的:数学模型提供了一种定量的方法来描述药物在口腔中的命运和作用,其中运输过程由唾液流动、膜形成、生物膜结构和龈沟液(GCF)的冲洗作用决定。口腔局部药代动力学与全身模型有很大不同,因此需要一个专门的框架。这项工作的目的是提出一个结构化的,基于生理学的概念,将体外释放试验与局部药代动力学和药效学联系起来。方法:在PubMed, Scopus和Web of Science(1980-2025)中对描述药物释放,局部PBPK和口腔PK/PD建模的出版物进行系统搜索的叙述回顾。数学公式分为释放动力学,迷你pbpk运输和局部PK/PD关系。经典模型(Higuchi, Korsmeyer-Peppas, Peppas-Sahlin)与描述唾液-粘膜-生物膜-口袋相互作用的迷你pbpk结构相结合。结果:组合模型捕获了膜上的吸附、生物膜内的扩散和GCF的冲刷。它允许模拟可变的临床条件,如炎症相关的QGCF变化,并将局部暴露与药效学结果联系起来。对PerioChip®、Arestin®和Atridox®的案例研究证明了机制模型如何解释观察到的治疗持续时间和低系统性暴露。结论:所提出的迷你pbpk框架连接了经验释放数据和口腔内的生理运输。它支持合理的配方设计,优化局部剂量,个性化预测牙龈袋内药物潴留。这种建模方法可以成为牙科生物材料和牙龈下治疗发展的实用工具。
{"title":"Mathematical Modeling of Local Drug Delivery in the Oral Cavity: From Release Kinetics to Mini-PBPK and Local PK/PD with Applications to Periodontal Therapies.","authors":"Rafał Rakoczy, Monika Machoy-Rakoczy, Izabela Gutowska","doi":"10.3390/pharmaceutics18010101","DOIUrl":"10.3390/pharmaceutics18010101","url":null,"abstract":"<p><strong>Background/objectives: </strong>Mathematical modelling provides a quantitative way to describe the fate and action of drugs in the oral cavity, where transport processes are shaped by salivary flow, pellicle formation, biofilm structure and the wash-out effect of gingival crevicular fluid (GCF). Local pharmacokinetics in the mouth differ substantially from systemic models, and therefore a dedicated framework is required. The aim of this work was to present a structured, physiologically based concept that links in vitro release testing with local pharmacokinetics and pharmacodynamics.</p><p><strong>Methods: </strong>A narrative review with elements of systematic search was conducted in PubMed, Scopus and Web of Science (1980-2025) for publications describing drug release, local PBPK, and PK/PD modelling in the oral cavity. Mathematical formulations were grouped into release kinetics, mini-PBPK transport and local PK/PD relations. Classical models (Higuchi, Korsmeyer-Peppas, Peppas-Sahlin) were integrated with a mini-PBPK structure describing saliva-mucosa-biofilm-pocket interactions.</p><p><strong>Results: </strong>The combined model captures adsorption to pellicle, diffusion within biofilm and wash-out by GCF. It allows simulation of variable clinical conditions, such as inflammation-related changes in Q<sub>GCF</sub>, and links local exposure to pharmacodynamic outcomes. Case studies with PerioChip<sup>®</sup>, Arestin<sup>®</sup>, and Atridox<sup>®</sup> demonstrate how mechanistic models explain observed therapeutic duration and low-systemic exposure.</p><p><strong>Conclusions: </strong>The proposed mini-PBPK framework bridges empirical release data and physiological transport in the oral cavity. It supports rational formulation design, optimisation of local dosage, and personalised prediction of drug retention in gingival pockets. This modelling approach can become a practical tool for the development of dental biomaterials and subgingival therapies.</p>","PeriodicalId":19894,"journal":{"name":"Pharmaceutics","volume":"18 1","pages":""},"PeriodicalIF":5.5,"publicationDate":"2026-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12845442/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146065769","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}