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Co-expression analysis provides a new strategy for mining key metabolites and genes in response to drought stress in Agropyron mongolicum. 共表达分析为挖掘蒙古草对干旱胁迫的关键代谢物和基因提供了新的策略。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-20 DOI: 10.1007/s11103-025-01644-z
Jing Wang, Shoujiang Sun, Shuxia Li, Wenxue Song, Xing Wang, Shuaiqi Guo, Xiaoya Hu, Xueqin Gao, Bingzhe Fu

Drought is a major natural disaster that affects plant growth. Agropyron mongolicum possesses a wide range of drought tolerance genes acquired during its long evolution and adaptation to harsh environments. However, the regulatory mechanisms for drought resistance in A. mongolicum are complex, limiting the development and utilization of gene resources in response to drought stress. In this study, we examined differences in morphological, physiological, metabolite and transcript levels between the drought-tolerant (T) and drought-sensitive (S) genotypes of A. mongolicum to identify key metabolites and genes associated with the drought response. The morphological and physiological results suggest that the S genotype is suppressed by drought stress to a greater extent than the T genotype. Based on the metabolome and transcriptome data, we identified that serine/threonine-protein kinase SRK2 (SRK2), peptide chain release factor subunit 1 (eRF1), glutamine synthetase (GS), polyphenol oxidase (PPO), and aspartyl protease family protein (ASP) were highly correlated with key metabolites such as L-γ-glutamyl-L-leucine and γ-glutamylphenylalanine in leaves by co-expression network analysis, and alcohol-forming fatty acyl-CoA reductase (FAR), DNA oxidative demethylase (ALKBH), GDSL esterase/lipase (GELP), beta-fructofuranosidase (INV), and glutamine synthetase (GS) were highly correlated with key metabolites such as Trp-Glu-Ile and citric acid diglucoside in roots. Moreover, we identified the potential involvement of fatty acid degradation and glycolysis/glucogenesis pathways in the enhancement of drought tolerance in A. mongolicum. This study provides a foundation for genetic engineering studies of drought resistance in Poaceae plants.

干旱是影响植物生长的主要自然灾害。蒙古草在长期的进化和对恶劣环境的适应中获得了广泛的抗旱基因。然而,蒙古冬青抗旱性调控机制复杂,限制了基因资源在干旱胁迫下的开发利用。在这项研究中,我们检测了蒙古沙蒿耐旱基因型(T)和干旱敏感基因型(S)在形态、生理、代谢物和转录水平上的差异,以确定与干旱响应相关的关键代谢物和基因。形态学和生理学结果表明,S基因型比T基因型受干旱胁迫的抑制程度更大。基于代谢组学和转录组学数据,研究人员通过共表达网络分析发现,丝氨酸/苏氨酸蛋白激酶SRK2 (SRK2)、肽链释放因子亚基1 (eRF1)、谷氨酰胺合成酶(GS)、多酚氧化酶(PPO)和天冬氨酸蛋白酶家族蛋白(ASP)与叶片中L-γ-谷氨酰基亮氨酸和γ-谷氨酰基苯丙氨酸等关键代谢产物高度相关,而酒精形成脂肪酰基辅酶a还原酶(FAR)、DNA氧化去甲基化酶(ALKBH)、GDSL酯/脂肪酶(GELP)、β -果糖呋喃苷酶(INV)和谷氨酰胺合成酶(GS)与根中Trp-Glu-Ile和柠檬酸二葡糖苷等关键代谢产物高度相关。此外,我们还确定了脂肪酸降解和糖酵解/糖生成途径在蒙古沙冬青抗旱性增强中的潜在作用。本研究为禾科植物抗旱性的基因工程研究奠定了基础。
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引用次数: 0
Pan-genomic insights into RLK family evolution and adaptation in Dioscorea alata. 薯蓣RLK家族进化与适应的泛基因组研究。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-20 DOI: 10.1007/s11103-025-01647-w
Zhi-Yan Wei, Sai-Xi Li, Ming-Han Li, Jie Tang, Yu-Qian Jiang, Xin-Yu Lu, Yan-Mei Zhang, Jia-Yu Xue
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引用次数: 0
BPH1 negatively regulates ABA signaling via AtSAP9 degradation. BPH1通过AtSAP9降解负调控ABA信号。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-20 DOI: 10.1007/s11103-025-01648-9
Og-Geum Woo, Arim Kim, Dong Hye Seo, Sunglan Chung, Woo Taek Kim, Jae-Hoon Lee

Previous studies have shown that BPH1 represses the abscisic acid (ABA)-mediated cellular responses. To further understand the mechanism of action of BPH1 in ABA signaling, the putative binding partners of BPH1 were investigated. Arabidopsis stress associated protein 9 (AtSAP9), which acts as a positive regulator of ABA signaling, has been identified as a BPH1-binding protein. Both BPH1 and AtSAP9 proteins were localized in the nucleus and cytosol, and a direct interaction between BPH1 and AtSAP9 was confirmed using yeast two-hybrid and bimolecular fluorescence complementation assays. The cell-free degradation assay indicated that MBP-AtSAP9 protein was degraded more slowly when incubated with the bph1 extracts than with Col-0 extracts, and that its degradation was dependent on the presence of the proteasome inhibitor MG132. Negative regulation of AtSAP9 protein stability by BPH1 was also confirmed in planta. Despite the E3 ubiquitin ligase activity of AtSAP9, the protein level of BPH1 was unaffected by AtSAP9. Collectively, these results indicate that BPH1, a CRL3 substrate receptor, functions as a repressor of ABA signaling, potentially through ubiquitin-proteasome system-dependent degradation of AtSAP9.

先前的研究表明,BPH1抑制脱落酸(ABA)介导的细胞反应。为了进一步了解BPH1在ABA信号传导中的作用机制,我们研究了BPH1可能的结合伙伴。拟南芥应激相关蛋白9 (AtSAP9)作为ABA信号的正向调节因子,已被鉴定为bph1结合蛋白。BPH1和AtSAP9蛋白均定位于细胞核和细胞质中,并通过酵母双杂交和双分子荧光互补实验证实了BPH1和AtSAP9蛋白之间的直接相互作用。无细胞降解实验表明,与Col-0提取物相比,bph1提取物对MBP-AtSAP9蛋白的降解速度更慢,并且其降解依赖于蛋白酶体抑制剂MG132的存在。在植物中也证实了BPH1对AtSAP9蛋白稳定性的负调控。尽管AtSAP9具有E3泛素连接酶活性,但BPH1的蛋白水平不受AtSAP9的影响。总的来说,这些结果表明BPH1,一个CRL3底物受体,作为ABA信号的抑制因子,可能通过泛素-蛋白酶体系统依赖性的AtSAP9降解而起作用。
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引用次数: 0
Reactive oxygen species production and signal transduction in response to stress triggered by Alternaria elicitors in Brassicaceae. 油菜科互交菌诱导胁迫下活性氧的产生及信号转导。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-20 DOI: 10.1007/s11103-025-01639-w
Sana Munir, Ahmad N Shahzad, Avanish Rai, Veselin Petrov, Tsanko Gechev, Sajid Shokat, Muhammad K Qureshi
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引用次数: 0
Clade specific divergence, cumulative haplo-pheno analysis, and genomic prediction of cytokinin oxidase (CKX) gene family under drought stress in rice. 水稻细胞分裂素氧化酶(CKX)基因家族在干旱胁迫下的进化支特异性分化、累积单倍表型分析及基因组预测
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-06 DOI: 10.1007/s11103-025-01640-3
Nibedita Swain, Raj Kishore Sahoo, C Parameswaran, Kishor P Jeughale, Suman Sarkar, Durga Prasad Barik, Sanghamitra Samantaray
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引用次数: 0
Enhancing rice crop resistance against brown plant hopper infestation through the foliar application of sodium nitroprusside. 硝普钠叶面施用提高水稻抗褐飞虱侵害能力。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-02 DOI: 10.1007/s11103-025-01634-1
Muhammad Farooq, Dan-Dan Zhao, Saleem Asif, Jae-Ryoung Park, Mohamed H Helal, Rashid Iqbal, Zakirullah Khan, Kyung-Min Kim
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引用次数: 0
Single-cell transcriptional profiling in Arabidopsis root exposed to boron toxicity at seedling stages. 幼苗期硼毒害拟南芥根系单细胞转录谱分析
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-10-02 DOI: 10.1007/s11103-025-01643-0
Ceyhun Kayıhan, Ebru Kocakaya, Yasin Kaymaz, Hikmet Yilmaz, Halis Batuhan Ünal, Oğuzhan Yaprak, Emre Aksoy, Dilara Sedef Karagöz
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引用次数: 0
Physiological and transcriptomic analysis reveal the response mechanisms to nutrient deficiencies in aquatic plant Spirodela polyrhiza. 生理学和转录组学分析揭示了水生植物多根螺旋藻对营养缺乏的响应机制。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-11 DOI: 10.1007/s11103-025-01635-0
Xuyao Zhao, Xiaozhe Li, Zuoliang Sun, Gaojie Li, Wenjun Guo, Yan Chen, Manli Xia, Yimeng Chen, Xiaoyu Wang, Yixian Li, Kangsheng Luo, Mingfei Ji, Pengfei Duan, Jingjing Yang, Hongwei Hou

Macrophytes are critical primary producers in freshwater ecosystems and offer potential as crop resources to support the growing human population. They are also widely used to mitigate eutrophication. Aquatic plants adapt themselves to the more complicated, changeable, and unstable conditions compared to terrestrial plants, especially the fluctuating nutrient environments. Nitrogen (N) and phosphorus (P) are the key nutrient elements for plants, and their biogeochemical cycles have been significantly disrupted by anthropogenic activities in diverse ecosystems. However, there is still a lack of comprehensive understanding about the adaptive mechanisms of N and P stress in aquatic plants. In this study, the response mechanisms in the macrophyte Spirodela polyrhiza under various nutrient conditions were analyzed. S. polyrhiza showed universal changes under nutrient deficiencies at the physiological level, including enhanced root growth, lower Chl content, higher Root-Frond ratio, and starch content. Genes involved in nutrient acquisition and remobilization, carbon metabolism, transcriptional regulation, hormones, and antioxidant systems were identified. Physiological and transcriptional changes revealed that the macrophyte S. polyrhiza adopts a nutrient acquisition-prioritization strategy under nutrient deficiency conditions, employing strategies similar to those observed in terrestrial plants. Post-transcriptional regulatory networks also highlighted the critical role of non-coding RNAs nutrient stress responses. Overall, S. polyrhiza employs integrated physiological and molecular strategies to cope with nutrient deficiency in aquatic environments. This study provides comprehensive insights into its adaptive responses and offers a valuable genetic resource for further novel gene discovery and functional analysis.

大型植物是淡水生态系统中重要的初级生产者,为支持不断增长的人口提供了潜在的作物资源。它们也被广泛用于缓解富营养化。与陆生植物相比,水生植物适应的环境更加复杂、多变和不稳定,尤其是养分环境的波动。氮(N)和磷(P)是植物的关键营养元素,在不同的生态系统中,它们的生物地球化学循环受到人为活动的显著破坏。然而,目前对水生植物对氮磷胁迫的适应机制还缺乏全面的认识。本研究分析了多根螺旋藻在不同营养条件下的响应机制。在生理水平上,多根参在营养缺乏条件下表现出根系生长加快、Chl含量降低、根茎比和淀粉含量升高等普遍变化。确定了参与营养获取和再动员、碳代谢、转录调节、激素和抗氧化系统的基因。生理和转录变化表明,在营养缺乏条件下,多根草采用了与陆生植物相似的营养获取优先策略。转录后调控网络也强调了非编码rna营养应激反应的关键作用。总体而言,多根参采用综合的生理和分子策略来应对水生环境中的营养缺乏。本研究对其适应性反应提供了全面的认识,并为进一步发现新基因和功能分析提供了宝贵的遗传资源。
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引用次数: 0
The transcription factor VaWRKY72 from Vitis amurensis positively regulates cold tolerance in Arabidopsis thaliana and grapevine. 葡萄(Vitis amurensis)转录因子vwrky72正调控拟南芥和葡萄的耐寒性。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-11 DOI: 10.1007/s11103-025-01641-2
Jiahui Ma, Xiaoxiao Yan, Xingcheng Qi, Fang Ding, Xinyi Hao, Shijin Yang, Weirong Xu, Xiuming Zhang
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引用次数: 0
TaEPFL1 gene controls the development of wheat pistils and stamens by regulating ethylene synthesis. TaEPFL1基因通过调控乙烯合成调控小麦雌蕊和雄蕊的发育。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-09-11 DOI: 10.1007/s11103-025-01636-z
Tianxun Nie, Yuhuan Guo, Youwei Yang, Naoki Yamamoto, Wenxuan Liu, Yichao Wu, Mingli Liao, Zhenyong Chen, Zhengsong Peng, Zaijun Yang

Proper development of floral organs is essential for reproductive success and grain yield in wheat. However, the molecular mechanisms regulating wheat floral organ development remain largely unknown. In this study, we characterized the role of the wheat TaEPFL1 gene in floral organ development and its association with ethylene signaling. TaEPFL1 was highly expressed in immature spikes of the pistillody mutant HTS-1, particularly during the pistil and stamen specification stages. Its expression was responsive to both exogenous ethylene and the ethylene inhibitor 1-Methylcyclopropene (1-MCP). Overexpression of TaEPFL1 in transgenic wheat led to shortened stamens, defective pistils, male sterility, and complete reproductive failure. Histological analysis revealed delayed tapetum degradation, indicating disrupted programmed cell death (PCD). Gas chromatography (GC) showed significantly reduced ethylene production and release in TaEPFL1-overexpressing lines. Similar floral defects were observed in wild-type plants treated with 1-MCP. Transcriptome and qRT-PCR analyses further confirmed downregulation of multiple ethylene biosynthesis-related genes, including three homologs of TaACO. These results suggest that TaEPFL1 negatively regulates ethylene biosynthesis by repressing TaACO expression, thereby impairing floral organ differentiation. We propose a feedback model in which ethylene induces TaEPFL1, which in turn suppresses ethylene production to maintain hormonal homeostasis. This study reveals a novel regulatory mechanism linking TaEPFL1 to ethylene-mediated floral development and provides new insights for improving wheat fertility through molecular breeding.

花器官的正常发育对小麦的繁殖成功和产量至关重要。然而,调控小麦花器官发育的分子机制仍不甚清楚。在这项研究中,我们鉴定了TaEPFL1基因在小麦花器官发育中的作用及其与乙烯信号的关联。TaEPFL1在雌蕊突变体HTS-1的未成熟穗中高度表达,尤其是在雌蕊和雄蕊形成阶段。其表达对外源乙烯和乙烯抑制剂1-甲基环丙烯(1-MCP)均有响应。TaEPFL1在转基因小麦中的过表达会导致雄蕊缩短、雌蕊缺陷、雄性不育和完全生殖失败。组织学分析显示绒毡层降解延迟,提示程序性细胞死亡中断(PCD)。气相色谱分析显示,过表达taepfl1的细胞系乙烯的生成和释放量显著降低。在1-MCP处理的野生型植物中也观察到类似的花缺陷。转录组和qRT-PCR分析进一步证实了多个乙烯生物合成相关基因的下调,包括三个TaACO同源基因。这些结果表明,TaEPFL1通过抑制TaACO表达负向调控乙烯生物合成,从而损害花器官分化。我们提出了一个反馈模型,其中乙烯诱导TaEPFL1,而TaEPFL1反过来抑制乙烯的产生以维持激素稳态。该研究揭示了TaEPFL1与乙烯介导的花发育之间的新调控机制,为通过分子育种提高小麦的育性提供了新的思路。
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Plant Molecular Biology
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