Pub Date : 2026-01-21DOI: 10.1007/s11103-025-01670-x
Dong Xu, Yuko Makita, Aalt Dirk Jan van Dijk
{"title":"Embracing AI in plant biology: a new era of discovery.","authors":"Dong Xu, Yuko Makita, Aalt Dirk Jan van Dijk","doi":"10.1007/s11103-025-01670-x","DOIUrl":"https://doi.org/10.1007/s11103-025-01670-x","url":null,"abstract":"","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 1","pages":"9"},"PeriodicalIF":3.8,"publicationDate":"2026-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146011618","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-21DOI: 10.1007/s11103-025-01676-5
Nguyen Ha Trang, Abdul Wakilu Sulemana, Moeka Fujita, Li Hongqiao, Chihiro Ohtaki, Akiko Suyama, Akiko Maruyama-Nakashita
{"title":"Increased anthocyanin accumulation and plant growth by driving PAP1 expression using the 3'downstream region of the sulfate transporter SULTR2;1 gene.","authors":"Nguyen Ha Trang, Abdul Wakilu Sulemana, Moeka Fujita, Li Hongqiao, Chihiro Ohtaki, Akiko Suyama, Akiko Maruyama-Nakashita","doi":"10.1007/s11103-025-01676-5","DOIUrl":"https://doi.org/10.1007/s11103-025-01676-5","url":null,"abstract":"","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 1","pages":"12"},"PeriodicalIF":3.8,"publicationDate":"2026-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146011642","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Caffeoyl-CoA O-methyltransferase (CCoAOMT) is a key enzyme in the phenylpropanoid pathway that plays a crucial role in lignin biosynthesis; however, its functional role in Medicago sativa remains poorly understood. In this study, we identified 44 MsCCoAOMT family members and analyzed their expression profiles across eight tissues and under polyethylene glycol (PEG)-induced osmotic stress. Among them, MsCCoAOMTh3 displayed preferential expression in roots and flowers, and was significantly upregulated in roots and stems following PEG treatment, suggesting a potential role in both plant development and stress responses. Functional validation through heterologous expression in Arabidopsis thaliana revealed that MsCCoAOMTh3 overexpression markedly increased lignin accumulation and promoted xylem development in roots. Furthermore, transgenic lines displayed enhanced drought tolerance, characterized by elevated antioxidant enzyme activity and reduced malondialdehyde (MDA) levels. Collectively, these findings suggest that MsCCoAOMTh3 acts as a positive regulator of root lignification and enhances drought tolerance by modulating both stress-responsive and lignin biosynthesis-related genes.
咖啡酰辅酶a o -甲基转移酶(CCoAOMT)是苯丙素途径的关键酶,在木质素生物合成中起重要作用;然而,其在紫花苜蓿中的功能作用仍然知之甚少。在这项研究中,我们鉴定了44个MsCCoAOMT家族成员,并分析了他们在聚乙二醇(PEG)诱导的渗透胁迫下在8个组织中的表达谱。其中,MsCCoAOMTh3在根和花中优先表达,在PEG处理后在根和茎中显著上调,提示其在植物发育和胁迫响应中均有潜在作用。通过拟南芥异源表达的功能验证表明,MsCCoAOMTh3过表达可显著增加木质素积累,促进根系木质部发育。此外,转基因品系表现出更强的抗旱性,其特征是抗氧化酶活性升高,丙二醛(MDA)水平降低。综上所述,这些发现表明MsCCoAOMTh3通过调节胁迫响应基因和木质素生物合成相关基因,作为根木质素化的积极调节因子,增强了根系的耐旱性。
{"title":"MsCCoAOMTh3 confers drought tolerance by mediating lignin content and ROS scavenging.","authors":"Shudi Huang, Fang Ma, Yunfei Liang, Jiaxin Wu, Zhiguo Xie, Xiangqiang Zhan, Yilin Cui, Zhichao Ma, Peizhi Yang","doi":"10.1007/s11103-025-01674-7","DOIUrl":"https://doi.org/10.1007/s11103-025-01674-7","url":null,"abstract":"<p><p>Caffeoyl-CoA O-methyltransferase (CCoAOMT) is a key enzyme in the phenylpropanoid pathway that plays a crucial role in lignin biosynthesis; however, its functional role in Medicago sativa remains poorly understood. In this study, we identified 44 MsCCoAOMT family members and analyzed their expression profiles across eight tissues and under polyethylene glycol (PEG)-induced osmotic stress. Among them, MsCCoAOMTh3 displayed preferential expression in roots and flowers, and was significantly upregulated in roots and stems following PEG treatment, suggesting a potential role in both plant development and stress responses. Functional validation through heterologous expression in Arabidopsis thaliana revealed that MsCCoAOMTh3 overexpression markedly increased lignin accumulation and promoted xylem development in roots. Furthermore, transgenic lines displayed enhanced drought tolerance, characterized by elevated antioxidant enzyme activity and reduced malondialdehyde (MDA) levels. Collectively, these findings suggest that MsCCoAOMTh3 acts as a positive regulator of root lignification and enhances drought tolerance by modulating both stress-responsive and lignin biosynthesis-related genes.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 1","pages":"8"},"PeriodicalIF":3.8,"publicationDate":"2026-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145948978","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-24DOI: 10.1007/s11103-025-01671-w
João Marcos Fernandes-Esteves, João Travassos-Lins, Juan David Ferreira Gomes, Marcio Alves-Ferreira
Auxin is one of the major driving forces of plant development and requires careful regulation of transporter proteins to establish polar auxin transport. The PIN-FORMED (PIN) family plays a pivotal role in plant development by establishing auxin gradients that govern vascular patterning and organogenesis. However, the PIN family remains severely underexplored in Setaria viridis, a well-established model for C4 monocots. In this study, we identified and characterized 13 PIN genes in the S. viridis genome. Phylogenetic and collinearity analyses revealed duplication events in the SvPIN1, SvPIN5 and SvPIN10 subfamilies. Structural analysis uncovered unique features, including potential pseudogenization of SvPIN5a. Expression profiling across five developmental stages unveiled the potential developmental roles of SvPINs, with SvPIN1 and SvPIN10 paralogues predominantly expressed in shoots and panicles, SvPIN2 and SvPIN9 in roots, while SvPIN5b showed leaf-enriched expression, suggesting potential involvement in leaf vascular development. Hormonal treatments in callus cultures revealed auxin-mediated upregulation of SvPIN1b, SvPIN2, SvPIN5d, SvPIN8 and SvPIN10a. Our findings provide significant insights into the role of PIN genes in S. viridis and other C4 monocots, establishing a foundation for future functional studies and offering potential targets for crop improvement through auxin transport manipulation.
生长素是植物发育的主要驱动力之一,需要仔细调节转运蛋白来建立生长素的极性转运。PIN- formed (PIN)家族通过建立生长素梯度来控制维管模式和器官发生,在植物发育中起着关键作用。然而,PIN家族在蛇尾草(Setaria viridis)中的研究仍然严重不足,蛇尾草是C4单子房的一个成熟模型。在本研究中,我们鉴定并鉴定了病毒链球菌基因组中的13个PIN基因。系统发育和共线性分析显示SvPIN1、SvPIN5和SvPIN10亚家族存在重复事件。结构分析揭示了独特的特征,包括潜在的SvPIN5a假原化。五个发育阶段的表达谱揭示了SvPINs的潜在发育作用,SvPIN1和SvPIN10亲本主要在茎和穗中表达,SvPIN2和SvPIN9在根中表达,而SvPIN5b在叶片中表达富集,表明可能参与叶片维管发育。在愈伤组织培养中,激素处理显示生长素介导的SvPIN1b、SvPIN2、SvPIN5d、SvPIN8和SvPIN10a表达上调。我们的研究结果为PIN基因在绿葡萄球菌和其他C4单子植物中的作用提供了重要的见解,为未来的功能研究奠定了基础,并为通过生长素转运操纵作物改良提供了潜在的靶点。
{"title":"The evolution and developmental expression profile of the PIN-FORMED family in Setaria viridis.","authors":"João Marcos Fernandes-Esteves, João Travassos-Lins, Juan David Ferreira Gomes, Marcio Alves-Ferreira","doi":"10.1007/s11103-025-01671-w","DOIUrl":"https://doi.org/10.1007/s11103-025-01671-w","url":null,"abstract":"<p><p>Auxin is one of the major driving forces of plant development and requires careful regulation of transporter proteins to establish polar auxin transport. The PIN-FORMED (PIN) family plays a pivotal role in plant development by establishing auxin gradients that govern vascular patterning and organogenesis. However, the PIN family remains severely underexplored in Setaria viridis, a well-established model for C<sub>4</sub> monocots. In this study, we identified and characterized 13 PIN genes in the S. viridis genome. Phylogenetic and collinearity analyses revealed duplication events in the SvPIN1, SvPIN5 and SvPIN10 subfamilies. Structural analysis uncovered unique features, including potential pseudogenization of SvPIN5a. Expression profiling across five developmental stages unveiled the potential developmental roles of SvPINs, with SvPIN1 and SvPIN10 paralogues predominantly expressed in shoots and panicles, SvPIN2 and SvPIN9 in roots, while SvPIN5b showed leaf-enriched expression, suggesting potential involvement in leaf vascular development. Hormonal treatments in callus cultures revealed auxin-mediated upregulation of SvPIN1b, SvPIN2, SvPIN5d, SvPIN8 and SvPIN10a. Our findings provide significant insights into the role of PIN genes in S. viridis and other C<sub>4</sub> monocots, establishing a foundation for future functional studies and offering potential targets for crop improvement through auxin transport manipulation.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 1","pages":"7"},"PeriodicalIF":3.8,"publicationDate":"2025-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145820434","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-23DOI: 10.1007/s11103-025-01665-8
Lanlan Feng, Naoki Yamamoto, Yin Li
Thermal energy has become an increasingly severe environmental stressor to cash crop production worldwide because of global warming. Annexins, proteinaceous protectants against abiotic stress, are multifunctional proteins capable of peroxidase- and Ca2+-dependent and Ca2+-independent binding to or insertion into membranes. Annexins in plants belong to the annexin D family and are further clustered into six phylogenetic clades on the basis of their structural diversity. A previous study in peanut identified six annexins, but their thermotolerance functions remain unknown. In this study, we report that AhANN6, a peanut annexin, confers heat resistance in Escherichia coli and Arabidopsis when overexpressed. AhANN6 expression led to positive responses to drought stress, ABA supplementation, and heat stress in leaves and was developmentally regulated during germination and pegging. The AhANN6-YFP fusion protein was targeted to the plasma membrane of tobacco cells, suggesting that AhANN6 is localized in the cell membrane. AhANN6-overexpressing E. coli exhibited better growth under heat stress and oxidative stress, validating the molecular function of AhANN6 against abiotic stress. AhANN6-overexpressing Arabidopsis also presented increased heat resistance during vegetative growth. The decreased response of electrolyte leakage in the transgenic Arabidopsis to heat stress indicates potentially improved membrane stability as a result of AhANN6 overexpression. Additionally, the overexpression of AhANN6 in Arabidopsis led to increased expression of AtPOD and AtAPX, key enzyme-encoding genes involved in ROS scavenging, suggesting that AhANN6 is involved in maintaining ROS detoxification. Our findings suggest that AhANN6 plays a crucial role in protecting cell membrane integrity and promoting vegetative growth under adverse environmental stressors.
{"title":"Peanut annexin AhANN6 promotes heat resistance in plant and bacterial cells.","authors":"Lanlan Feng, Naoki Yamamoto, Yin Li","doi":"10.1007/s11103-025-01665-8","DOIUrl":"10.1007/s11103-025-01665-8","url":null,"abstract":"<p><p>Thermal energy has become an increasingly severe environmental stressor to cash crop production worldwide because of global warming. Annexins, proteinaceous protectants against abiotic stress, are multifunctional proteins capable of peroxidase- and Ca<sup>2+</sup>-dependent and Ca<sup>2+</sup>-independent binding to or insertion into membranes. Annexins in plants belong to the annexin D family and are further clustered into six phylogenetic clades on the basis of their structural diversity. A previous study in peanut identified six annexins, but their thermotolerance functions remain unknown. In this study, we report that AhANN6, a peanut annexin, confers heat resistance in Escherichia coli and Arabidopsis when overexpressed. AhANN6 expression led to positive responses to drought stress, ABA supplementation, and heat stress in leaves and was developmentally regulated during germination and pegging. The AhANN6-YFP fusion protein was targeted to the plasma membrane of tobacco cells, suggesting that AhANN6 is localized in the cell membrane. AhANN6-overexpressing E. coli exhibited better growth under heat stress and oxidative stress, validating the molecular function of AhANN6 against abiotic stress. AhANN6-overexpressing Arabidopsis also presented increased heat resistance during vegetative growth. The decreased response of electrolyte leakage in the transgenic Arabidopsis to heat stress indicates potentially improved membrane stability as a result of AhANN6 overexpression. Additionally, the overexpression of AhANN6 in Arabidopsis led to increased expression of AtPOD and AtAPX, key enzyme-encoding genes involved in ROS scavenging, suggesting that AhANN6 is involved in maintaining ROS detoxification. Our findings suggest that AhANN6 plays a crucial role in protecting cell membrane integrity and promoting vegetative growth under adverse environmental stressors.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 1","pages":"6"},"PeriodicalIF":3.8,"publicationDate":"2025-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145810910","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-23DOI: 10.1007/s11103-025-01662-x
Francesca Caselli, Micaela Palermiti, Rosanna Petrella, Veronica Astrid Morlacchi, Kai Dünser, Jűrgen Kleine-Vehn, Matteo Chiara, Veronica Gregis
The gynoecium, a highly specialized structure in flowering plants, ensures their high reproductive success through the control of different crucial steps spanning from ovule protection to fertilization and seed maturation and dispersion. Multiple bpc mutants show reduced vigor, small fruit size and height, a reduced number of seeds and problems in septum fusion and formation. BPCs are known to be involved in the regulation of key factors involved in plant development, and they are thought to function both as activators and repressors of target gene expression. Here we showed that gynoecium development is affected in different multiple mutants of the Basic PentaCysteine (BPC) genes, where the septum fails to develop properly, and that BPCs of class I and II regulate the expression of different genes involved in carpel development and phytohormonal pathways regulation. Considering the fundamental role of the gynoecium, which affects the reproductive success of the plants, we focused on understanding which genes could be putative direct targets of BPCs and thus involved in gynoecium development. We demonstrated that SPATULA and NO TRANSMITTING TRACT (NTT), which play pivotal roles in carpel and transmitting tract development, are downregulated. As a consequence, bpc multiple mutants fail to properly develop the septum and the transmitting tract. Interestingly, among the downregulated genes, we also found PIN-LIKES3, whose promoter can be directly bound by BPCs, which is an auxin efflux carrier that regulates and controls cytoplasmic availability of auxin and could also contribute to various growth processes.
{"title":"A novel role of BPCs in the control of medial domain differentiation during gynoecium development in Arabidopsis thaliana.","authors":"Francesca Caselli, Micaela Palermiti, Rosanna Petrella, Veronica Astrid Morlacchi, Kai Dünser, Jűrgen Kleine-Vehn, Matteo Chiara, Veronica Gregis","doi":"10.1007/s11103-025-01662-x","DOIUrl":"10.1007/s11103-025-01662-x","url":null,"abstract":"<p><p>The gynoecium, a highly specialized structure in flowering plants, ensures their high reproductive success through the control of different crucial steps spanning from ovule protection to fertilization and seed maturation and dispersion. Multiple bpc mutants show reduced vigor, small fruit size and height, a reduced number of seeds and problems in septum fusion and formation. BPCs are known to be involved in the regulation of key factors involved in plant development, and they are thought to function both as activators and repressors of target gene expression. Here we showed that gynoecium development is affected in different multiple mutants of the Basic PentaCysteine (BPC) genes, where the septum fails to develop properly, and that BPCs of class I and II regulate the expression of different genes involved in carpel development and phytohormonal pathways regulation. Considering the fundamental role of the gynoecium, which affects the reproductive success of the plants, we focused on understanding which genes could be putative direct targets of BPCs and thus involved in gynoecium development. We demonstrated that SPATULA and NO TRANSMITTING TRACT (NTT), which play pivotal roles in carpel and transmitting tract development, are downregulated. As a consequence, bpc multiple mutants fail to properly develop the septum and the transmitting tract. Interestingly, among the downregulated genes, we also found PIN-LIKES3, whose promoter can be directly bound by BPCs, which is an auxin efflux carrier that regulates and controls cytoplasmic availability of auxin and could also contribute to various growth processes.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 1","pages":"4"},"PeriodicalIF":3.8,"publicationDate":"2025-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12727758/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145810820","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-22DOI: 10.1007/s11103-025-01666-7
Xiao-Xiong Kong, Tao Chen, Li-Yu Gao, Xu Huang, Xiao Liu, Jing Zhang, Zhi-Ping Zhang, Chun-Lei Wang
Rapid alkalinization factors (RALFs) are short-chain polypeptides that regulate methyl-esterified pectin accumulation and reactive oxygen species (ROS) metabolism in pollen tubes across diverse plant species. In pear (Pyrus) self-incompatibility (SI), pollen tube polar growth is inhibited by increased apical methyl-esterified pectin content and disrupted apical ROS gradients, while pear RALF family members show no expression response to SI, indicating they are not inherently involved in the SI regulatory pathway. We investigated pollen tube-highly expressed pear RALFs (PbrRALF2/5/6/7/9/10), among which PbrRALF5/10 interact with pollen tube-expressed PbrLRX7/8/10/11 and negatively regulate apical methyl-esterified pectin content (in contrast to PbrRALF6, which competitively binds PbrLRX8 with PbrRALF10 and exerts opposite pectin-regulatory effects) and positively regulate ROS accumulation via the PbrANX/PbrBUPS receptor kinase pathway. Exogenous application of recombinant PbrRALF5/10 (rPbrRALF5/10) during pear SI responses achieved phenotypic rescue in vitro: it significantly reduced apical methyl-esterified pectin content (not to self-compatible levels), re-established the ROS polarity gradient, alleviated SI-induced nuclear DNA degradation, and alleviated incompatible pollen tube growth inhibition. These findings, based on exclusive in vitro experiments, clarify that PbrRALF5/10, while not participating in the SI pathway, mitigate SI-induced pollen tube defects by regulating pectin and ROS, providing insights into their potential for improving pear reproductive success. Notably, in vivo validation remains critical to fully support these conclusions, as no in vivo evidence was obtained to confirm the function of PbrRALF5/10 in alleviating SI under natural pollination conditions.
{"title":"PbrRALF5/10 prevents incompatible pollen tube death by reconstructing the methyl-esterified pectin and reactive oxygen species metabolism of pear in vitro.","authors":"Xiao-Xiong Kong, Tao Chen, Li-Yu Gao, Xu Huang, Xiao Liu, Jing Zhang, Zhi-Ping Zhang, Chun-Lei Wang","doi":"10.1007/s11103-025-01666-7","DOIUrl":"https://doi.org/10.1007/s11103-025-01666-7","url":null,"abstract":"<p><p>Rapid alkalinization factors (RALFs) are short-chain polypeptides that regulate methyl-esterified pectin accumulation and reactive oxygen species (ROS) metabolism in pollen tubes across diverse plant species. In pear (Pyrus) self-incompatibility (SI), pollen tube polar growth is inhibited by increased apical methyl-esterified pectin content and disrupted apical ROS gradients, while pear RALF family members show no expression response to SI, indicating they are not inherently involved in the SI regulatory pathway. We investigated pollen tube-highly expressed pear RALFs (PbrRALF2/5/6/7/9/10), among which PbrRALF5/10 interact with pollen tube-expressed PbrLRX7/8/10/11 and negatively regulate apical methyl-esterified pectin content (in contrast to PbrRALF6, which competitively binds PbrLRX8 with PbrRALF10 and exerts opposite pectin-regulatory effects) and positively regulate ROS accumulation via the PbrANX/PbrBUPS receptor kinase pathway. Exogenous application of recombinant PbrRALF5/10 (rPbrRALF5/10) during pear SI responses achieved phenotypic rescue in vitro: it significantly reduced apical methyl-esterified pectin content (not to self-compatible levels), re-established the ROS polarity gradient, alleviated SI-induced nuclear DNA degradation, and alleviated incompatible pollen tube growth inhibition. These findings, based on exclusive in vitro experiments, clarify that PbrRALF5/10, while not participating in the SI pathway, mitigate SI-induced pollen tube defects by regulating pectin and ROS, providing insights into their potential for improving pear reproductive success. Notably, in vivo validation remains critical to fully support these conclusions, as no in vivo evidence was obtained to confirm the function of PbrRALF5/10 in alleviating SI under natural pollination conditions.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 1","pages":"2"},"PeriodicalIF":3.8,"publicationDate":"2025-12-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145805244","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-18DOI: 10.1007/s11103-025-01668-5
Shayan Sarkar, Jon K Pittman, Kendal D Hirschi
Cation/H⁺ exchangers (CAXs) mediate vacuolar Ca2+ sequestration and are critical for maintaining cytosolic Ca2+ homeostasis in plants. Arabidopsis CAX1, a member of the Ca2+/Cation Antiporter (CaCA) superfamily, features a modular architecture comprising two pseudosymmetrical domains separated by a cytosolic loop called the acidic motif. CAX1 is also regulated by a cytosolic N-terminal autoinhibitory domain. To define the structural basis of CAX1 activity, we characterized truncated constructs of the N-terminal half of CAX1, comprising a 6-transmembrane (TM) module lacking the autoinhibitory domain (½N-sCAX1), using yeast complementation, structural modeling, and protein interaction studies. The ½N-sCAX1 monomer folded into a stable topology but it failed to interact with itself or with full-length CAX1, or confer transport activity. Functional reconstitution required tethering two ½N-sCAX1 modules via the acidic motif or removal of TM1, which restored partial Ca2+ transport in yeast. Protein interaction assays revealed that the autoinhibitory domain contributes to ½N-CAX1 dimerization, while TM1 interferes with complex assembly. Structural models demonstrated that correct alignment of the conserved GNxxE motif across ½N-sCAX1 monomers, either by artificial tethering or potentially by higher order hexameric oligomerization, is essential to reconstruct a functional Ca2+-binding pocket. These findings show that CAX1 functionality depends on specific topological constraints and modular interactions that guide formation of CAX1 halves. Our results highlight how architectural features such as TM1 and the autoinhibitory domain regulate transporter assembly and activity, offering insight into CaCA biogenesis and providing a framework for engineering transporters with tailored functional properties.
{"title":"A modular fragment of Arabidopsis cation exchanger 1 (CAX1) reveals structural constraints on assembly.","authors":"Shayan Sarkar, Jon K Pittman, Kendal D Hirschi","doi":"10.1007/s11103-025-01668-5","DOIUrl":"https://doi.org/10.1007/s11103-025-01668-5","url":null,"abstract":"<p><p>Cation/H⁺ exchangers (CAXs) mediate vacuolar Ca<sup>2+</sup> sequestration and are critical for maintaining cytosolic Ca<sup>2+</sup> homeostasis in plants. Arabidopsis CAX1, a member of the Ca<sup>2+</sup>/Cation Antiporter (CaCA) superfamily, features a modular architecture comprising two pseudosymmetrical domains separated by a cytosolic loop called the acidic motif. CAX1 is also regulated by a cytosolic N-terminal autoinhibitory domain. To define the structural basis of CAX1 activity, we characterized truncated constructs of the N-terminal half of CAX1, comprising a 6-transmembrane (TM) module lacking the autoinhibitory domain (½N-sCAX1), using yeast complementation, structural modeling, and protein interaction studies. The ½N-sCAX1 monomer folded into a stable topology but it failed to interact with itself or with full-length CAX1, or confer transport activity. Functional reconstitution required tethering two ½N-sCAX1 modules via the acidic motif or removal of TM1, which restored partial Ca<sup>2+</sup> transport in yeast. Protein interaction assays revealed that the autoinhibitory domain contributes to ½N-CAX1 dimerization, while TM1 interferes with complex assembly. Structural models demonstrated that correct alignment of the conserved GNxxE motif across ½N-sCAX1 monomers, either by artificial tethering or potentially by higher order hexameric oligomerization, is essential to reconstruct a functional Ca<sup>2+</sup>-binding pocket. These findings show that CAX1 functionality depends on specific topological constraints and modular interactions that guide formation of CAX1 halves. Our results highlight how architectural features such as TM1 and the autoinhibitory domain regulate transporter assembly and activity, offering insight into CaCA biogenesis and providing a framework for engineering transporters with tailored functional properties.</p>","PeriodicalId":20064,"journal":{"name":"Plant Molecular Biology","volume":"116 1","pages":"1"},"PeriodicalIF":3.8,"publicationDate":"2025-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145775134","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}