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Embracing AI in plant biology: a new era of discovery. 在植物生物学中拥抱人工智能:一个发现的新时代。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-21 DOI: 10.1007/s11103-025-01670-x
Dong Xu, Yuko Makita, Aalt Dirk Jan van Dijk
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引用次数: 0
Increased anthocyanin accumulation and plant growth by driving PAP1 expression using the 3'downstream region of the sulfate transporter SULTR2;1 gene. 利用硫酸盐转运体SULTR2的3'下游区域驱动PAP1表达,增加花青素积累和植物生长;1基因。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-21 DOI: 10.1007/s11103-025-01676-5
Nguyen Ha Trang, Abdul Wakilu Sulemana, Moeka Fujita, Li Hongqiao, Chihiro Ohtaki, Akiko Suyama, Akiko Maruyama-Nakashita
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引用次数: 0
MsCCoAOMTh3 confers drought tolerance by mediating lignin content and ROS scavenging. MsCCoAOMTh3通过介导木质素含量和活性氧清除来赋予抗旱性。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-01-10 DOI: 10.1007/s11103-025-01674-7
Shudi Huang, Fang Ma, Yunfei Liang, Jiaxin Wu, Zhiguo Xie, Xiangqiang Zhan, Yilin Cui, Zhichao Ma, Peizhi Yang

Caffeoyl-CoA O-methyltransferase (CCoAOMT) is a key enzyme in the phenylpropanoid pathway that plays a crucial role in lignin biosynthesis; however, its functional role in Medicago sativa remains poorly understood. In this study, we identified 44 MsCCoAOMT family members and analyzed their expression profiles across eight tissues and under polyethylene glycol (PEG)-induced osmotic stress. Among them, MsCCoAOMTh3 displayed preferential expression in roots and flowers, and was significantly upregulated in roots and stems following PEG treatment, suggesting a potential role in both plant development and stress responses. Functional validation through heterologous expression in Arabidopsis thaliana revealed that MsCCoAOMTh3 overexpression markedly increased lignin accumulation and promoted xylem development in roots. Furthermore, transgenic lines displayed enhanced drought tolerance, characterized by elevated antioxidant enzyme activity and reduced malondialdehyde (MDA) levels. Collectively, these findings suggest that MsCCoAOMTh3 acts as a positive regulator of root lignification and enhances drought tolerance by modulating both stress-responsive and lignin biosynthesis-related genes.

咖啡酰辅酶a o -甲基转移酶(CCoAOMT)是苯丙素途径的关键酶,在木质素生物合成中起重要作用;然而,其在紫花苜蓿中的功能作用仍然知之甚少。在这项研究中,我们鉴定了44个MsCCoAOMT家族成员,并分析了他们在聚乙二醇(PEG)诱导的渗透胁迫下在8个组织中的表达谱。其中,MsCCoAOMTh3在根和花中优先表达,在PEG处理后在根和茎中显著上调,提示其在植物发育和胁迫响应中均有潜在作用。通过拟南芥异源表达的功能验证表明,MsCCoAOMTh3过表达可显著增加木质素积累,促进根系木质部发育。此外,转基因品系表现出更强的抗旱性,其特征是抗氧化酶活性升高,丙二醛(MDA)水平降低。综上所述,这些发现表明MsCCoAOMTh3通过调节胁迫响应基因和木质素生物合成相关基因,作为根木质素化的积极调节因子,增强了根系的耐旱性。
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引用次数: 0
The evolution and developmental expression profile of the PIN-FORMED family in Setaria viridis. 狗尾草PIN-FORMED家族的进化和发育表达谱。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-24 DOI: 10.1007/s11103-025-01671-w
João Marcos Fernandes-Esteves, João Travassos-Lins, Juan David Ferreira Gomes, Marcio Alves-Ferreira

Auxin is one of the major driving forces of plant development and requires careful regulation of transporter proteins to establish polar auxin transport. The PIN-FORMED (PIN) family plays a pivotal role in plant development by establishing auxin gradients that govern vascular patterning and organogenesis. However, the PIN family remains severely underexplored in Setaria viridis, a well-established model for C4 monocots. In this study, we identified and characterized 13 PIN genes in the S. viridis genome. Phylogenetic and collinearity analyses revealed duplication events in the SvPIN1, SvPIN5 and SvPIN10 subfamilies. Structural analysis uncovered unique features, including potential pseudogenization of SvPIN5a. Expression profiling across five developmental stages unveiled the potential developmental roles of SvPINs, with SvPIN1 and SvPIN10 paralogues predominantly expressed in shoots and panicles, SvPIN2 and SvPIN9 in roots, while SvPIN5b showed leaf-enriched expression, suggesting potential involvement in leaf vascular development. Hormonal treatments in callus cultures revealed auxin-mediated upregulation of SvPIN1b, SvPIN2, SvPIN5d, SvPIN8 and SvPIN10a. Our findings provide significant insights into the role of PIN genes in S. viridis and other C4 monocots, establishing a foundation for future functional studies and offering potential targets for crop improvement through auxin transport manipulation.

生长素是植物发育的主要驱动力之一,需要仔细调节转运蛋白来建立生长素的极性转运。PIN- formed (PIN)家族通过建立生长素梯度来控制维管模式和器官发生,在植物发育中起着关键作用。然而,PIN家族在蛇尾草(Setaria viridis)中的研究仍然严重不足,蛇尾草是C4单子房的一个成熟模型。在本研究中,我们鉴定并鉴定了病毒链球菌基因组中的13个PIN基因。系统发育和共线性分析显示SvPIN1、SvPIN5和SvPIN10亚家族存在重复事件。结构分析揭示了独特的特征,包括潜在的SvPIN5a假原化。五个发育阶段的表达谱揭示了SvPINs的潜在发育作用,SvPIN1和SvPIN10亲本主要在茎和穗中表达,SvPIN2和SvPIN9在根中表达,而SvPIN5b在叶片中表达富集,表明可能参与叶片维管发育。在愈伤组织培养中,激素处理显示生长素介导的SvPIN1b、SvPIN2、SvPIN5d、SvPIN8和SvPIN10a表达上调。我们的研究结果为PIN基因在绿葡萄球菌和其他C4单子植物中的作用提供了重要的见解,为未来的功能研究奠定了基础,并为通过生长素转运操纵作物改良提供了潜在的靶点。
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引用次数: 0
Peanut annexin AhANN6 promotes heat resistance in plant and bacterial cells. 花生膜联蛋白AhANN6促进植物和细菌细胞的耐热性。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-23 DOI: 10.1007/s11103-025-01665-8
Lanlan Feng, Naoki Yamamoto, Yin Li

Thermal energy has become an increasingly severe environmental stressor to cash crop production worldwide because of global warming. Annexins, proteinaceous protectants against abiotic stress, are multifunctional proteins capable of peroxidase- and Ca2+-dependent and Ca2+-independent binding to or insertion into membranes. Annexins in plants belong to the annexin D family and are further clustered into six phylogenetic clades on the basis of their structural diversity. A previous study in peanut identified six annexins, but their thermotolerance functions remain unknown. In this study, we report that AhANN6, a peanut annexin, confers heat resistance in Escherichia coli and Arabidopsis when overexpressed. AhANN6 expression led to positive responses to drought stress, ABA supplementation, and heat stress in leaves and was developmentally regulated during germination and pegging. The AhANN6-YFP fusion protein was targeted to the plasma membrane of tobacco cells, suggesting that AhANN6 is localized in the cell membrane. AhANN6-overexpressing E. coli exhibited better growth under heat stress and oxidative stress, validating the molecular function of AhANN6 against abiotic stress. AhANN6-overexpressing Arabidopsis also presented increased heat resistance during vegetative growth. The decreased response of electrolyte leakage in the transgenic Arabidopsis to heat stress indicates potentially improved membrane stability as a result of AhANN6 overexpression. Additionally, the overexpression of AhANN6 in Arabidopsis led to increased expression of AtPOD and AtAPX, key enzyme-encoding genes involved in ROS scavenging, suggesting that AhANN6 is involved in maintaining ROS detoxification. Our findings suggest that AhANN6 plays a crucial role in protecting cell membrane integrity and promoting vegetative growth under adverse environmental stressors.

由于全球变暖,热能已成为全球经济作物生产日益严重的环境压力源。膜联蛋白是抗非生物胁迫的蛋白质保护剂,是一种多功能蛋白,能够过氧化物酶和Ca2+依赖性和Ca2+非依赖性结合或插入膜。植物中的膜联蛋白属于膜联蛋白D家族,根据其结构多样性可进一步分为6个系统发育支系。先前对花生的研究发现了六种膜联蛋白,但它们的耐热功能尚不清楚。在这项研究中,我们报道了花生膜联蛋白AhANN6在大肠杆菌和拟南芥中过表达时赋予耐热性。AhANN6的表达导致叶片对干旱胁迫、ABA补充和热胁迫的积极响应,并在萌发和贴枝过程中受到发育调控。AhANN6- yfp融合蛋白靶向烟草细胞质膜,表明AhANN6定位于细胞膜。过表达AhANN6的大肠杆菌在热应激和氧化应激下表现出更好的生长,验证了AhANN6抗非生物应激的分子功能。过表达ahann6的拟南芥在营养生长过程中也表现出更高的耐热性。在转基因拟南芥中,电解质泄漏对热胁迫的响应降低,表明AhANN6过表达可能提高了膜的稳定性。此外,AhANN6在拟南芥中的过表达导致参与清除ROS的关键酶编码基因AtPOD和AtAPX的表达增加,表明AhANN6参与维持ROS解毒。我们的研究结果表明,在不利环境胁迫下,AhANN6在保护细胞膜完整性和促进营养物质生长方面起着至关重要的作用。
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引用次数: 0
The heterotrimeric G protein γ3 subunit, RGG3/GS3, integrates sugar-starvation and hormone-responsive signaling pathways to promote coleoptile elongation during anaerobic germination in rice. 异三聚体G蛋白γ - 3亚基RGG3/GS3整合糖饥饿和激素应答信号通路,促进水稻厌氧萌发过程中胚芽鞘伸长。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-23 DOI: 10.1007/s11103-025-01667-6
Taichi Takashima, Hikaru Azumahara, Haru Hirano, Soshi Hirata, Mika Fukuda, Sagar Lamsal, Kotaro Miura, Yukimoto Iwasaki, Takeshi Fukao
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引用次数: 0
Navigating microplastic-induced stress in plants: adaptations from physiology to gene regulation. 在植物中导航微塑性诱导的胁迫:从生理学到基因调控的适应。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-23 DOI: 10.1007/s11103-025-01669-4
Necla Pehlivan, Yahya Terzi, Sedat Gündoğdu, Rafet Çağrı Öztürk, Kenan Gedik
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引用次数: 0
A novel role of BPCs in the control of medial domain differentiation during gynoecium development in Arabidopsis thaliana. BPCs在拟南芥雌蕊发育过程中控制内侧区分化中的新作用。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-23 DOI: 10.1007/s11103-025-01662-x
Francesca Caselli, Micaela Palermiti, Rosanna Petrella, Veronica Astrid Morlacchi, Kai Dünser, Jűrgen Kleine-Vehn, Matteo Chiara, Veronica Gregis

The gynoecium, a highly specialized structure in flowering plants, ensures their high reproductive success through the control of different crucial steps spanning from ovule protection to fertilization and seed maturation and dispersion. Multiple bpc mutants show reduced vigor, small fruit size and height, a reduced number of seeds and problems in septum fusion and formation. BPCs are known to be involved in the regulation of key factors involved in plant development, and they are thought to function both as activators and repressors of target gene expression. Here we showed that gynoecium development is affected in different multiple mutants of the Basic PentaCysteine (BPC) genes, where the septum fails to develop properly, and that BPCs of class I and II regulate the expression of different genes involved in carpel development and phytohormonal pathways regulation. Considering the fundamental role of the gynoecium, which affects the reproductive success of the plants, we focused on understanding which genes could be putative direct targets of BPCs and thus involved in gynoecium development. We demonstrated that SPATULA and NO TRANSMITTING TRACT (NTT), which play pivotal roles in carpel and transmitting tract development, are downregulated. As a consequence, bpc multiple mutants fail to properly develop the septum and the transmitting tract. Interestingly, among the downregulated genes, we also found PIN-LIKES3, whose promoter can be directly bound by BPCs, which is an auxin efflux carrier that regulates and controls cytoplasmic availability of auxin and could also contribute to various growth processes.

雌蕊是开花植物中一种高度特化的结构,通过控制从胚珠保护到受精、种子成熟和扩散的不同关键步骤,确保了开花植物的高繁殖成功率。多个bpc突变体表现出活力下降、果实大小和高度小、种子数量减少以及隔膜融合和形成问题。已知BPCs参与调控植物发育的关键因子,并且它们被认为是靶基因表达的激活因子和抑制因子。本研究表明,碱性五半胱氨酸(Basic PentaCysteine, BPC)基因的不同多突变体会影响雌蕊的发育,其中隔膜不能正常发育,并且I类和II类BPC调节了参与心皮发育和植物激素通路调节的不同基因的表达。考虑到雌蕊的基本作用,影响植物的生殖成功,我们重点了解哪些基因可能是BPCs的直接靶点,从而参与雌蕊发育。我们发现,在心皮和传递束发育中起关键作用的SPATULA和NO传递束(NTT)下调。因此,bpc多突变体不能正常发育中隔和传播道。有趣的是,在下调的基因中,我们还发现了PIN-LIKES3,其启动子可以直接与BPCs结合,BPCs是一种生长素外流载体,调节和控制细胞质中生长素的可用性,并可能参与各种生长过程。
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引用次数: 0
PbrRALF5/10 prevents incompatible pollen tube death by reconstructing the methyl-esterified pectin and reactive oxygen species metabolism of pear in vitro. PbrRALF5/10通过重建梨的甲基酯化果胶和活性氧代谢来防止非亲和性花粉管死亡。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-22 DOI: 10.1007/s11103-025-01666-7
Xiao-Xiong Kong, Tao Chen, Li-Yu Gao, Xu Huang, Xiao Liu, Jing Zhang, Zhi-Ping Zhang, Chun-Lei Wang

Rapid alkalinization factors (RALFs) are short-chain polypeptides that regulate methyl-esterified pectin accumulation and reactive oxygen species (ROS) metabolism in pollen tubes across diverse plant species. In pear (Pyrus) self-incompatibility (SI), pollen tube polar growth is inhibited by increased apical methyl-esterified pectin content and disrupted apical ROS gradients, while pear RALF family members show no expression response to SI, indicating they are not inherently involved in the SI regulatory pathway. We investigated pollen tube-highly expressed pear RALFs (PbrRALF2/5/6/7/9/10), among which PbrRALF5/10 interact with pollen tube-expressed PbrLRX7/8/10/11 and negatively regulate apical methyl-esterified pectin content (in contrast to PbrRALF6, which competitively binds PbrLRX8 with PbrRALF10 and exerts opposite pectin-regulatory effects) and positively regulate ROS accumulation via the PbrANX/PbrBUPS receptor kinase pathway. Exogenous application of recombinant PbrRALF5/10 (rPbrRALF5/10) during pear SI responses achieved phenotypic rescue in vitro: it significantly reduced apical methyl-esterified pectin content (not to self-compatible levels), re-established the ROS polarity gradient, alleviated SI-induced nuclear DNA degradation, and alleviated incompatible pollen tube growth inhibition. These findings, based on exclusive in vitro experiments, clarify that PbrRALF5/10, while not participating in the SI pathway, mitigate SI-induced pollen tube defects by regulating pectin and ROS, providing insights into their potential for improving pear reproductive success. Notably, in vivo validation remains critical to fully support these conclusions, as no in vivo evidence was obtained to confirm the function of PbrRALF5/10 in alleviating SI under natural pollination conditions.

快速碱化因子(ralf)是一种短链多肽,在多种植物花粉管中调节甲基酯化果胶积累和活性氧(ROS)代谢。在梨自交不亲和(self-incompatibility, SI)中,花粉管极性生长受到顶端甲基酯化果胶含量增加和顶端ROS梯度破坏的抑制,而梨RALF家族成员对自交不亲和没有表达响应,表明它们本身并不参与自交不亲和调控途径。我们研究了花粉管高表达的梨ralf (PbrRALF2/5/6/7/9/10),其中PbrRALF5/10与花粉管高表达的PbrLRX7/8/10/11相互作用,负向调节顶端甲基酯化果胶含量(与PbrRALF6相反,PbrRALF6与PbrLRX8竞争性结合,发挥相反的果胶调节作用),并通过PbrANX/PbrBUPS受体激酶途径正向调节ROS积累。外源应用重组PbrRALF5/10 (rbrralf5 /10)在梨SI反应中实现了体外表型拯救:显著降低了梨顶端甲基酯化果胶含量(未达到自亲和水平),重新建立了ROS极性梯度,减轻了SI诱导的核DNA降解,减轻了不亲和的花粉管生长抑制。这些研究结果表明,PbrRALF5/10在不参与SI通路的情况下,通过调节果胶和ROS来减轻SI诱导的花粉管缺陷,从而揭示了它们提高梨繁殖成功率的潜力。值得注意的是,体内验证仍然是完全支持这些结论的关键,因为没有获得体内证据来证实PbrRALF5/10在自然授粉条件下减轻SI的功能。
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引用次数: 0
A modular fragment of Arabidopsis cation exchanger 1 (CAX1) reveals structural constraints on assembly. 拟南芥阳离子交换器1 (CAX1)的模块片段揭示了组装的结构约束。
IF 3.8 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-18 DOI: 10.1007/s11103-025-01668-5
Shayan Sarkar, Jon K Pittman, Kendal D Hirschi

Cation/H⁺ exchangers (CAXs) mediate vacuolar Ca2+ sequestration and are critical for maintaining cytosolic Ca2+ homeostasis in plants. Arabidopsis CAX1, a member of the Ca2+/Cation Antiporter (CaCA) superfamily, features a modular architecture comprising two pseudosymmetrical domains separated by a cytosolic loop called the acidic motif. CAX1 is also regulated by a cytosolic N-terminal autoinhibitory domain. To define the structural basis of CAX1 activity, we characterized truncated constructs of the N-terminal half of CAX1, comprising a 6-transmembrane (TM) module lacking the autoinhibitory domain (½N-sCAX1), using yeast complementation, structural modeling, and protein interaction studies. The ½N-sCAX1 monomer folded into a stable topology but it failed to interact with itself or with full-length CAX1, or confer transport activity. Functional reconstitution required tethering two ½N-sCAX1 modules via the acidic motif or removal of TM1, which restored partial Ca2+ transport in yeast. Protein interaction assays revealed that the autoinhibitory domain contributes to ½N-CAX1 dimerization, while TM1 interferes with complex assembly. Structural models demonstrated that correct alignment of the conserved GNxxE motif across ½N-sCAX1 monomers, either by artificial tethering or potentially by higher order hexameric oligomerization, is essential to reconstruct a functional Ca2+-binding pocket. These findings show that CAX1 functionality depends on specific topological constraints and modular interactions that guide formation of CAX1 halves. Our results highlight how architectural features such as TM1 and the autoinhibitory domain regulate transporter assembly and activity, offering insight into CaCA biogenesis and providing a framework for engineering transporters with tailored functional properties.

阳离子/H +交换器(CAXs)介导液泡Ca2+封存,对维持植物细胞质Ca2+稳态至关重要。拟南芥CAX1是Ca2+/阳离子反转运蛋白(CaCA)超家族的成员,具有模块化结构,包括两个假对称结构域,由称为酸性基序的细胞质环分开。CAX1也受胞质n端自抑制结构域的调控。为了确定CAX1活性的结构基础,我们利用酵母互补、结构建模和蛋白质相互作用研究,表征了CAX1 n端一半的截断结构,包括缺乏自抑制结构域(½N-sCAX1)的6-跨膜(TM)模块。1 / 2 N-sCAX1单体折叠成一个稳定的拓扑结构,但它不能与自身或全长CAX1相互作用,也不能赋予运输活性。功能重建需要通过酸性基元或去除TM1来系住两个½N-sCAX1模块,从而恢复酵母中部分Ca2+运输。蛋白质相互作用分析显示,自抑制结构域有助于½N-CAX1二聚化,而TM1干扰复合物组装。结构模型表明,保守的GNxxE基序在½N-sCAX1单体上的正确排列,无论是通过人工系结还是通过高阶六聚体低聚化,都是重建功能Ca2+结合口袋所必需的。这些发现表明,CAX1的功能取决于特定的拓扑约束和模块相互作用,这些相互作用指导CAX1半部分的形成。我们的研究结果强调了TM1和自抑制结构域等结构特征如何调节转运蛋白的组装和活性,为了解CaCA的生物发生提供了见解,并为具有定制功能特性的工程转运蛋白提供了框架。
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引用次数: 0
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Plant Molecular Biology
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