Pub Date : 2023-09-03DOI: 10.1080/00318884.2023.2271359
Albert Reñé
"Marine benthic dinoflagellates – their relevance for science and society (2nd, completely revised edition)." Phycologia, ahead-of-print(ahead-of-print), p. 1
海洋底栖甲藻-它们与科学和社会的相关性(第2版,完全修订版)。《生理学》,印前版,第1页
{"title":"Marine benthic dinoflagellates – their relevance for science and society (2nd, completely revised edition) <b>Marine benthic dinoflagellates – their relevance for science and society (2nd, completely revised edition)</b> . Mona Hoppenrath, Nicolas Chomérat, Takeo Horiguchi, Shauna A. Murray & Lesley Rhodes2023. 376 pp. Senckenberg Gesellschaft für Naturforschung, Frankfurt am Main, Germany. [Senckenberg Buch vol. 88.] 34.90€ [hardback: ISBN 9783510614240].","authors":"Albert Reñé","doi":"10.1080/00318884.2023.2271359","DOIUrl":"https://doi.org/10.1080/00318884.2023.2271359","url":null,"abstract":"\"Marine benthic dinoflagellates – their relevance for science and society (2nd, completely revised edition).\" Phycologia, ahead-of-print(ahead-of-print), p. 1","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":"21 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134949348","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-09-03DOI: 10.1080/00318884.2023.2254621
Narongrit Muangmai, Sinchai Maneekat, Anong Chirapart, Giuseppe C. Zuccarello
ABSTRACTFor long-term management and conservation of marine resources an understanding of their genetic diversity and geographic distribution is necessary. The red alga Gracilaria salicornia is widely distributed along the coasts of Thailand and has been used as food and as fertilizer. However, there have been no studies examining the genetic diversity of this alga. The present research aimed to employ two different genetic markers, mitochondrial (COI-5P) and chloroplast (RuBisCO spacer) for exploring the genetic diversity and phylogeography of G. salicornia in Thailand. Our analyses, inferred from both markers, revealed different levels of genetic diversity between the two coasts of Thailand, and the recognition of seven new COI haplotypes. Gracilaria salicornia in the Andaman Sea had higher genetic diversity than in the Gulf of Thailand. Significant genetic divergence was found between populations in the Andaman Sea and the Gulf of Thailand, likely due to the geographic barrier of the Thai-Malay Peninsula and the complex ocean currents. No genetic structuring was detected in the Gulf of Thailand, whereas low to moderate genetic differentiation was found between populations in the Andaman Sea, suggesting a possible break between the northern and southern Andaman Sea. This break could be explained by ocean circulation patterns around the Malacca Strait. These findings provide further evidence supporting the Thai-Malay Peninsula and oceanographic currents as strong barriers to dispersal, leading to genetic differentiation and population structuring of G. salicornia and other marine species. These results can be used to guide conservation management actions and exploitation of this marine resource.KEYWORDS: COIMacroalgaePopulation geneticsPhylogeographyRhodophyta ACKNOWLEDGEMENTSWe thank Jantana Praiboon and Jakaphan Bulan for help collecting and sequencing samples. We also thank the associate editor Gavin Maneveldt and two anonymous reviewers for their comments and suggestions.DISCLOSURE STATEMENTNo potential conflict of interest was reported by the authors.Supplementary InformationSupplemental data for this article can be accessed online at https://doi.org/10.1080/00318884.2023.2254621Additional informationFundingThis work was supported by a research grant to NM from the Thailand Research Fund (MRG6080040).
{"title":"Contrasting patterns of genetic diversity and population discontinuity in the common red seaweed <i>Gracilaria salicornia</i> (Gracilariaceae) along the coasts of Thailand","authors":"Narongrit Muangmai, Sinchai Maneekat, Anong Chirapart, Giuseppe C. Zuccarello","doi":"10.1080/00318884.2023.2254621","DOIUrl":"https://doi.org/10.1080/00318884.2023.2254621","url":null,"abstract":"ABSTRACTFor long-term management and conservation of marine resources an understanding of their genetic diversity and geographic distribution is necessary. The red alga Gracilaria salicornia is widely distributed along the coasts of Thailand and has been used as food and as fertilizer. However, there have been no studies examining the genetic diversity of this alga. The present research aimed to employ two different genetic markers, mitochondrial (COI-5P) and chloroplast (RuBisCO spacer) for exploring the genetic diversity and phylogeography of G. salicornia in Thailand. Our analyses, inferred from both markers, revealed different levels of genetic diversity between the two coasts of Thailand, and the recognition of seven new COI haplotypes. Gracilaria salicornia in the Andaman Sea had higher genetic diversity than in the Gulf of Thailand. Significant genetic divergence was found between populations in the Andaman Sea and the Gulf of Thailand, likely due to the geographic barrier of the Thai-Malay Peninsula and the complex ocean currents. No genetic structuring was detected in the Gulf of Thailand, whereas low to moderate genetic differentiation was found between populations in the Andaman Sea, suggesting a possible break between the northern and southern Andaman Sea. This break could be explained by ocean circulation patterns around the Malacca Strait. These findings provide further evidence supporting the Thai-Malay Peninsula and oceanographic currents as strong barriers to dispersal, leading to genetic differentiation and population structuring of G. salicornia and other marine species. These results can be used to guide conservation management actions and exploitation of this marine resource.KEYWORDS: COIMacroalgaePopulation geneticsPhylogeographyRhodophyta ACKNOWLEDGEMENTSWe thank Jantana Praiboon and Jakaphan Bulan for help collecting and sequencing samples. We also thank the associate editor Gavin Maneveldt and two anonymous reviewers for their comments and suggestions.DISCLOSURE STATEMENTNo potential conflict of interest was reported by the authors.Supplementary InformationSupplemental data for this article can be accessed online at https://doi.org/10.1080/00318884.2023.2254621Additional informationFundingThis work was supported by a research grant to NM from the Thailand Research Fund (MRG6080040).","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":"42 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134949599","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-09-03DOI: 10.1080/00318884.2023.2244813
Armando Mendoza-Flores, M. del Pilar Sánchez-Saavedra
ABSTRACTAmphidinium carterae is a dinoflagellate of increasing interest for producing bioactive compounds. The aim of this study was to investigate the effect of five irradiances (50, 100, 150, 200 and 250 µmol photon m–2 s–1) on the fatty acid profile of A. carterae. The results show that high irradiances increase the lipid productivity (36.65 mg l–1 d–1 at 50 µmol photon m–2 s–1 to 90 mg l–1 d–1 at 250 µmol photon m–2 s–1). High irradiance increased the content of polyunsaturated fatty acids (PUFAs) relative to the total content of fatty acids (40.0% at 50 µmol photon m–2 s–1 to 53.23% at 250 µmol photon m–2 s–1) and decreased the amount of monounsaturated fatty acids (MUFAs) (14.30% at 50 µmol photon m–2 s–1 to 6.04% at 250 µmol photon m–2 s–1). The higher PUFAs content was due to docosahexaenoic acid (DHA; 20.76% at 50 µmol photon m–2 s–1 to 30.63% at 250 µmol photon m–2 s–1) and eicosapentaenoic acid (EPA; 14.91% at 50 µmol photon m–2 s–1 to 18.96% at 250 µmol photon m–2 s–1). Palmitic acid (C16:0) had the highest content among saturated fatty acids (19.87% at 50 µmol photon m–2 s–1 to 22.29% at 250 µmol photon m–2 s–1). The proportion of neutral lipids tended to increase under high irradiances (100–250 µmol photon m–2 s–1). At the lowest irradiance (50 µmol photon m–2 s–1), the proportion of polar lipids was higher than that of neutral lipids. PUFAs had the main content within polar lipids at the five irradiances (47%–50%). The major neutral lipids were SFAs at the five irradiances (47%–51%). It was concluded that the irradiance levels influence the lipid metabolism of A. carterae. The increase in irradiance level raises the production of lipids and the content of EPA and DHA for potential utilization in the biotechnological, aquaculture and nutraceutical industries.KEYWORDS: DinoflagellatesDocosahexaenoic acidLipid classesPolyunsaturated fatty acids AUTHOR CONTRIBUTIONSA.M.F.: design and implementation of the experiments and manuscript preparation.M.P.S.S. supervision of experiments and data processing, contribution to manuscript preparation, and financial support.STATEMENT OF INFORMED CONSENT, HUMAN/ANIMAL RIGHTSNo conflicts, informed consent, or human or animal rights are applicable to this study.ACKNOWLEDGEMENTSThis work has been funded by Consejo Nacional de Ciencia y Tecnología (CONACyT) (Grant Project: SEP-CONACyT 130074), and CICESE (Grant Project: 623108). A.M.F. thanks the postdoctoral scholarship from the Oceanography Division of CICESE and the postdoctoral scholarship from CONACyT.DISCLOSURE STATEMENTNo potential conflict of interest was reported by the authors.Additional informationFundingThis work was supported by the Centro de Investigación Científica y de Educación Superior de Ensenada, Baja California [623108].
摘要黄斑双鞭毛藻是一种因生产生物活性化合物而日益受到关注的鞭毛藻。研究了50、100、150、200和250µmol光子m-2 s-1辐照对黄芪脂肪酸谱的影响。结果表明,高辐照度提高了脂质产量(50µmol光子m-2 s-1时为36.65 mg l-1 d-1, 250µmol光子m-2 s-1时为90 mg l-1 d-1)。高辐照增加了多不饱和脂肪酸(PUFAs)相对于脂肪酸总含量的含量(在50µmol光子m-2 s-1下为40.0%,在250µmol光子m-2 s-1下为53.23%),降低了单不饱和脂肪酸(MUFAs)的含量(在50µmol光子m-2 s-1下为14.30%,在250µmol光子m-2 s-1下为6.04%)。PUFAs含量较高是由于二十二碳六烯酸(DHA);50µmol光子m-2 s-1时为20.76%,250µmol光子m-2 s-1时为30.63%)和二十碳五烯酸(EPA;50µmol光子m-2 s-1时为14.91%,250µmol光子m-2 s-1时为18.96%)。饱和脂肪酸中棕榈酸(C16:0)的含量最高,在50µmol光子m-2 s-1时为19.87%,在250µmol光子m-2 s-1时为22.29%。高辐照度(100-250µmol光子m-2 s-1)下,中性脂的比例有增加的趋势。在最低辐照度(50µmol光子m-2 s-1)下,极性脂质比例高于中性脂质比例。5种辐照度下PUFAs主要含量在极性脂质内(47% ~ 50%)。在5种辐照度(47%-51%)下,主要中性脂质为sfa。综上所述,光照水平影响了黄颡鱼的脂质代谢。辐照水平的增加提高了脂类的产量以及EPA和DHA的含量,可用于生物技术、水产养殖和营养保健工业。关键词:甲藻;二十二碳六烯酸;脂类;多不饱和脂肪酸;监督实验和数据处理,参与稿件准备,并提供资金支持。知情同意、人类/动物权利声明本研究不涉及冲突、知情同意或人类/动物权利。本工作由国家科学委员会Tecnología (CONACyT)(资助项目:SEP-CONACyT 130074)和CICESE(资助项目:623108)资助。A.M.F.感谢中国科学院海洋学部博士后奖学金和中国科学院海洋研究所博士后奖学金。声明作者未报告潜在的利益冲突。本研究得到了Centro de Investigación Científica y de Educación Superior de Ensenada, Baja California的支持[623108]。
{"title":"Light irradiance modifies the fatty acid composition of <i>Amphidinium carterae</i> (Dinophyceae)","authors":"Armando Mendoza-Flores, M. del Pilar Sánchez-Saavedra","doi":"10.1080/00318884.2023.2244813","DOIUrl":"https://doi.org/10.1080/00318884.2023.2244813","url":null,"abstract":"ABSTRACTAmphidinium carterae is a dinoflagellate of increasing interest for producing bioactive compounds. The aim of this study was to investigate the effect of five irradiances (50, 100, 150, 200 and 250 µmol photon m–2 s–1) on the fatty acid profile of A. carterae. The results show that high irradiances increase the lipid productivity (36.65 mg l–1 d–1 at 50 µmol photon m–2 s–1 to 90 mg l–1 d–1 at 250 µmol photon m–2 s–1). High irradiance increased the content of polyunsaturated fatty acids (PUFAs) relative to the total content of fatty acids (40.0% at 50 µmol photon m–2 s–1 to 53.23% at 250 µmol photon m–2 s–1) and decreased the amount of monounsaturated fatty acids (MUFAs) (14.30% at 50 µmol photon m–2 s–1 to 6.04% at 250 µmol photon m–2 s–1). The higher PUFAs content was due to docosahexaenoic acid (DHA; 20.76% at 50 µmol photon m–2 s–1 to 30.63% at 250 µmol photon m–2 s–1) and eicosapentaenoic acid (EPA; 14.91% at 50 µmol photon m–2 s–1 to 18.96% at 250 µmol photon m–2 s–1). Palmitic acid (C16:0) had the highest content among saturated fatty acids (19.87% at 50 µmol photon m–2 s–1 to 22.29% at 250 µmol photon m–2 s–1). The proportion of neutral lipids tended to increase under high irradiances (100–250 µmol photon m–2 s–1). At the lowest irradiance (50 µmol photon m–2 s–1), the proportion of polar lipids was higher than that of neutral lipids. PUFAs had the main content within polar lipids at the five irradiances (47%–50%). The major neutral lipids were SFAs at the five irradiances (47%–51%). It was concluded that the irradiance levels influence the lipid metabolism of A. carterae. The increase in irradiance level raises the production of lipids and the content of EPA and DHA for potential utilization in the biotechnological, aquaculture and nutraceutical industries.KEYWORDS: DinoflagellatesDocosahexaenoic acidLipid classesPolyunsaturated fatty acids AUTHOR CONTRIBUTIONSA.M.F.: design and implementation of the experiments and manuscript preparation.M.P.S.S. supervision of experiments and data processing, contribution to manuscript preparation, and financial support.STATEMENT OF INFORMED CONSENT, HUMAN/ANIMAL RIGHTSNo conflicts, informed consent, or human or animal rights are applicable to this study.ACKNOWLEDGEMENTSThis work has been funded by Consejo Nacional de Ciencia y Tecnología (CONACyT) (Grant Project: SEP-CONACyT 130074), and CICESE (Grant Project: 623108). A.M.F. thanks the postdoctoral scholarship from the Oceanography Division of CICESE and the postdoctoral scholarship from CONACyT.DISCLOSURE STATEMENTNo potential conflict of interest was reported by the authors.Additional informationFundingThis work was supported by the Centro de Investigación Científica y de Educación Superior de Ensenada, Baja California [623108].","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":"45 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134949603","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-09-03DOI: 10.1080/00318884.2023.2247713
Antony Otinga Oteng’o, Boo Yeon Won, Tae Oh Cho
ABSTRACTEndoplura gyeokpoensis sp. nov. and E. limpeticola sp. nov. from Korea are described based on molecular and morphological analyses. The crustose brown algal genus Endoplura previously comprised three species: E. aurea, E. jejuensis and E. koreana. Our phylogenetic analyses inferred from rbcL and concatenated rbcL and COI-5P data revealed that E. gyeokpoensis sp. nov. and E. limpeticola sp. nov. are placed in the Endoplura clade with robust bootstrap support and Bayesian posterior probabilities. Endoplura gyeokpoensis is characterized by small crustose thalli, thallus outline with a lighter margin, and 2–4 plurangia terminated by 2–3 sterile cells. Endoplura limpeticola is distinguished by epizoic crustose thalli on limpets, thick thalli up to 751 μm, thallus outline with a darker margin, multicellular rhizoids, and two plurangia terminated by 2–3 sterile cells. Our study shows that the two new Endoplura species are molecularly and morphologically distinguished from each other as well as from the congeners.KEYWORDS: COI-5PEpizoicMorphologyPhylogenyrbcLTaxonomy ACKNOWLEDGEMENTSWe are grateful to Dr. Shinya Uwai for his valuable comments on the article and to two anonymous reviewers for improving the manuscript.DISCLOSURE STATEMENTNo potential conflict of interest was reported by the authors.Supplementary InformationSupplemental data for this article can be accessed online at https://doi.org/10.1080/00318884.2023.2247713Additional informationFundingThis study was supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (2021R1I1A2059577), by the Ministry of Ocean and Fisheries (Marine Biotics Project, 20210469), and by the National Marine Biodiversity Institute of Korea (the management of Marine Fishery Bio-resources Center 2023) to Tae Oh Cho. This research was also supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (2021R1I1A1A01051909) to Boo Yeon Won.
{"title":"<i>Endoplura gyeokpoensis sp. nov</i> . and <i>E. limpeticola sp. nov</i> . (Ralfsiales, Phaeophyceae), two new crustose brown algae from Korea","authors":"Antony Otinga Oteng’o, Boo Yeon Won, Tae Oh Cho","doi":"10.1080/00318884.2023.2247713","DOIUrl":"https://doi.org/10.1080/00318884.2023.2247713","url":null,"abstract":"ABSTRACTEndoplura gyeokpoensis sp. nov. and E. limpeticola sp. nov. from Korea are described based on molecular and morphological analyses. The crustose brown algal genus Endoplura previously comprised three species: E. aurea, E. jejuensis and E. koreana. Our phylogenetic analyses inferred from rbcL and concatenated rbcL and COI-5P data revealed that E. gyeokpoensis sp. nov. and E. limpeticola sp. nov. are placed in the Endoplura clade with robust bootstrap support and Bayesian posterior probabilities. Endoplura gyeokpoensis is characterized by small crustose thalli, thallus outline with a lighter margin, and 2–4 plurangia terminated by 2–3 sterile cells. Endoplura limpeticola is distinguished by epizoic crustose thalli on limpets, thick thalli up to 751 μm, thallus outline with a darker margin, multicellular rhizoids, and two plurangia terminated by 2–3 sterile cells. Our study shows that the two new Endoplura species are molecularly and morphologically distinguished from each other as well as from the congeners.KEYWORDS: COI-5PEpizoicMorphologyPhylogenyrbcLTaxonomy ACKNOWLEDGEMENTSWe are grateful to Dr. Shinya Uwai for his valuable comments on the article and to two anonymous reviewers for improving the manuscript.DISCLOSURE STATEMENTNo potential conflict of interest was reported by the authors.Supplementary InformationSupplemental data for this article can be accessed online at https://doi.org/10.1080/00318884.2023.2247713Additional informationFundingThis study was supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (2021R1I1A2059577), by the Ministry of Ocean and Fisheries (Marine Biotics Project, 20210469), and by the National Marine Biodiversity Institute of Korea (the management of Marine Fishery Bio-resources Center 2023) to Tae Oh Cho. This research was also supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (2021R1I1A1A01051909) to Boo Yeon Won.","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":"40 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134949727","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-09-03DOI: 10.1080/00318884.2023.2247175
Xuan-Vy Nguyen, Lawrence M. Liao, Showe-Mei Lin
ABSTRACTGrateloupia sensu lato has had a long and troublesome taxonomic history because of superficial similarities in morphology, ill-defined species boundaries and lack of diagnostic characters that leave many gaps that still need to be fully resolved. In this study, we carried out detailed observations on female reproductive structures, and inferred the phylogenetic relationships of the Grateloupia-like species occurring in Vietnam based on rbcL and LSU rDNA sequence analyses. The new species Phyllymenia nhatrangensis sp. nov. differs from its sister species P. gibbesii in the thickness of the cortex. The new species is slightly flattened, composed of two to four main blades, bearing numerous marginal and a few superficial, lanceolate bladelets. Blade sizes of P. nhatrangensis are also smaller than those of P. gibbesii, which are longer and wider. However, the new species shares with species from western Pacific Ocean, such as P. taiwanensis and P. huangiae, the presence of frequent marginal proliferations. Based on rbcL, the divergence between P. nhatrangensis and P. gibbesii was 3.3% (39 bp). With the present addition, Grateloupia sensu lato now comprises 16 species, including nine species of Grateloupia, three species of Phyllymenia, two species of Yonagunia and one species each of Dermocorynus and Prionitis.KEYWORDS: Auxiliary cell ampullaeMorphologyPhylogenetic analysis ACKNOWLEDGEMENTSWe thank Dr. Dao Viet Ha, director of the Institute of Oceanography, the staff of its Department of Marine Botany, and the Vietnam Academy of Science and Technology Key Lab on Food and Environmental Safety (Central Vietnam), Institute of Oceanography, Vietnam for the permission to use their equipment. LML acknowledges the travel support granted by the Graduate School of Integrated Sciences for Life, Hiroshima University. The critical suggestions from two anonymous reviewers have helped improve the manuscript and are gratefully acknowledged.DISCLOSURE STATEMENTNo potential conflict of interest was reported by the authors.Supplementary InformationSupplemental data for this article can be accessed online at https://doi.org/10.1080/00318884.2023.2247175Additional informationFundingThis work was supported by Vietnam Academy of Science and Technology, under Grant TĐĐTB0.04/21-23.
【摘要】由于在形态上的表面相似性、种界不清以及缺乏诊断特征等方面存在许多有待全面解决的空白,使得拉托格鲁皮亚(grateloupia sensu lato)的分类历史漫长而麻烦。在本研究中,我们通过对雌性生殖结构的详细观察,并基于rbcL和LSU rDNA序列分析推断了越南发生的Grateloupia-like物种的系统发育关系。新种Phyllymenia nhatrangensis sp. 11 .与其姊妹种P. gibbesii的皮层厚度不同。新种稍扁平,由二到四个主叶片组成,有许多边缘和一些表面,披针形的小片。叶面尺寸也比长臂猿小,长而宽。然而,新种与来自西太平洋的p.t aiensis和p.p huangiae共享,存在频繁的边缘增殖。基于rbcL, P. nhatrangensis与P. gibbesii的差异为3.3% (39 bp)。加上目前的增加,现在有16种,其中包括9种Grateloupia, 3种Phyllymenia, 2种Yonagunia和1种Dermocorynus和Prionitis。感谢越南海洋研究所所长Dao Viet Ha博士、海洋植物系工作人员和越南科学院食品与环境安全(越南中部)重点实验室允许我们使用他们的设备。LML感谢广岛大学生命综合科学研究生院提供的旅行支持。两位匿名审稿人提出的重要建议有助于改进本文,我们对此表示感谢。声明作者未报告潜在的利益冲突。本文的补充数据可在https://doi.org/10.1080/00318884.2023.2247175Additional上获得。本研究由越南科学技术研究院资助,资助项目TĐĐTB0.04/21-23。
{"title":"Systematic revision of the <i>Grateloupia</i> complex (Rhodophyta) from Vietnam using <i>rbc</i> L and LSU sequences, with the description of <i>Phyllymenia nhatrangensis sp. nov.</i>","authors":"Xuan-Vy Nguyen, Lawrence M. Liao, Showe-Mei Lin","doi":"10.1080/00318884.2023.2247175","DOIUrl":"https://doi.org/10.1080/00318884.2023.2247175","url":null,"abstract":"ABSTRACTGrateloupia sensu lato has had a long and troublesome taxonomic history because of superficial similarities in morphology, ill-defined species boundaries and lack of diagnostic characters that leave many gaps that still need to be fully resolved. In this study, we carried out detailed observations on female reproductive structures, and inferred the phylogenetic relationships of the Grateloupia-like species occurring in Vietnam based on rbcL and LSU rDNA sequence analyses. The new species Phyllymenia nhatrangensis sp. nov. differs from its sister species P. gibbesii in the thickness of the cortex. The new species is slightly flattened, composed of two to four main blades, bearing numerous marginal and a few superficial, lanceolate bladelets. Blade sizes of P. nhatrangensis are also smaller than those of P. gibbesii, which are longer and wider. However, the new species shares with species from western Pacific Ocean, such as P. taiwanensis and P. huangiae, the presence of frequent marginal proliferations. Based on rbcL, the divergence between P. nhatrangensis and P. gibbesii was 3.3% (39 bp). With the present addition, Grateloupia sensu lato now comprises 16 species, including nine species of Grateloupia, three species of Phyllymenia, two species of Yonagunia and one species each of Dermocorynus and Prionitis.KEYWORDS: Auxiliary cell ampullaeMorphologyPhylogenetic analysis ACKNOWLEDGEMENTSWe thank Dr. Dao Viet Ha, director of the Institute of Oceanography, the staff of its Department of Marine Botany, and the Vietnam Academy of Science and Technology Key Lab on Food and Environmental Safety (Central Vietnam), Institute of Oceanography, Vietnam for the permission to use their equipment. LML acknowledges the travel support granted by the Graduate School of Integrated Sciences for Life, Hiroshima University. The critical suggestions from two anonymous reviewers have helped improve the manuscript and are gratefully acknowledged.DISCLOSURE STATEMENTNo potential conflict of interest was reported by the authors.Supplementary InformationSupplemental data for this article can be accessed online at https://doi.org/10.1080/00318884.2023.2247175Additional informationFundingThis work was supported by Vietnam Academy of Science and Technology, under Grant TĐĐTB0.04/21-23.","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":"14 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134949728","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-09-03DOI: 10.1080/00318884.2023.2257128
Xudan Lu, Zuoyi Chen, David U. Hernández-Becerril, Nina Lundholm, Yang Li
ABSTRACTSpecies of Chaetoceros sect. Stenocincta are frequently observed in marine phytoplankton. To study species diversity within the section Stenocincta, monoclonal strains were established from Chinese coastal waters and Norwegian Sea. Following detailed morphological observations and molecular evidence inferred from nucleus-encoded large subunit ribosomal DNA, the descriptions of C. affinis and C. willei are emended based on isolates from their respective type localities. Additionally, three new species are described. Chaetoceros donghaiensis sp. nov. is characterized by short straight chains, with thin setae only, and terminal setae that tend to cross distally. Chaetoceros forceps sp. nov. is unique by its thick terminal setae, each with an inflation near the end, with each pair forming a V-shape, resembling forceps. Chaetoceros lepidus sp. nov. is characterized by short, straight chains, narrowly elliptical valve faces, setae all located in the apical plane, and arched intercalary setae in opposite directions to the chain axis in broad girdle views. Three other distinct clades, which may also represent new species, were discerned in the LSU rDNA phylogeny, but more morphological characters are needed before formal proposals can be made. These species/clades formed a well-supported monophyletic lineage, supporting the current circumscription of section Stenocincta. This section is characterized by colonies in straight chains, cells with one chloroplast only, narrow lanceolate apertures, and terminal setae generally thicker than intercalary ones or both similar and thin. However, in C. diversus the terminal setae are thin and distinctly thicker pairs of intercalary setae are usual.KEYWORDS: MorphologyLSU rDNAChaetoceros affinisChaetoceros willeiChaetoceros donghaiensisChaetoceros forcepsChaetoceros lepidus DISCLOSURE STATEMENTNo potential conflict of interest was reported by the authors.Additional informationFundingThis work was supported by the National Nature Science Foundation of China [32170206]; Joint Fund of National Science Foundation of China and Chinese Shandong Province [U2106205]; National Key Research and Development Program of China [2022YFC3105201].
{"title":"Taxonomy and phylogeny of <i>Chaetoceros</i> species of the section <i>Stenocincta</i> (Bacillariophyceae), with emendation of <i>C. affinis</i> and <i>C. willei</i> and description of three new species","authors":"Xudan Lu, Zuoyi Chen, David U. Hernández-Becerril, Nina Lundholm, Yang Li","doi":"10.1080/00318884.2023.2257128","DOIUrl":"https://doi.org/10.1080/00318884.2023.2257128","url":null,"abstract":"ABSTRACTSpecies of Chaetoceros sect. Stenocincta are frequently observed in marine phytoplankton. To study species diversity within the section Stenocincta, monoclonal strains were established from Chinese coastal waters and Norwegian Sea. Following detailed morphological observations and molecular evidence inferred from nucleus-encoded large subunit ribosomal DNA, the descriptions of C. affinis and C. willei are emended based on isolates from their respective type localities. Additionally, three new species are described. Chaetoceros donghaiensis sp. nov. is characterized by short straight chains, with thin setae only, and terminal setae that tend to cross distally. Chaetoceros forceps sp. nov. is unique by its thick terminal setae, each with an inflation near the end, with each pair forming a V-shape, resembling forceps. Chaetoceros lepidus sp. nov. is characterized by short, straight chains, narrowly elliptical valve faces, setae all located in the apical plane, and arched intercalary setae in opposite directions to the chain axis in broad girdle views. Three other distinct clades, which may also represent new species, were discerned in the LSU rDNA phylogeny, but more morphological characters are needed before formal proposals can be made. These species/clades formed a well-supported monophyletic lineage, supporting the current circumscription of section Stenocincta. This section is characterized by colonies in straight chains, cells with one chloroplast only, narrow lanceolate apertures, and terminal setae generally thicker than intercalary ones or both similar and thin. However, in C. diversus the terminal setae are thin and distinctly thicker pairs of intercalary setae are usual.KEYWORDS: MorphologyLSU rDNAChaetoceros affinisChaetoceros willeiChaetoceros donghaiensisChaetoceros forcepsChaetoceros lepidus DISCLOSURE STATEMENTNo potential conflict of interest was reported by the authors.Additional informationFundingThis work was supported by the National Nature Science Foundation of China [32170206]; Joint Fund of National Science Foundation of China and Chinese Shandong Province [U2106205]; National Key Research and Development Program of China [2022YFC3105201].","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":"45 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134949347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-09-03DOI: 10.1080/00318884.2023.2243433
Victor Andrei Rodrigues Carneiro, Nuno Tavares Martins, Sebastiana Lidielda Albuquerque da Silva, Maria Beatriz de Barros-Barreto, Sonia Barreto Pereira, Valéria Cassano
ABSTRACTThe green algal genus Ulva is one of the most widely distributed macroalgal genera. The taxonomy of Ulva is problematic due to its simple morphology. The study of the diversity of this genus has undergone great advances using molecular data, leading to changes in the taxonomic status of species, and the recognition of species complexes and cryptic species. Here we reassessed Ulva species from southeastern Brazil using molecular data. We recognized 10 taxa, among which only three previously reported species were confirmed by molecular data: U. compressa, U. lactuca and U. ohnoi, the latter recently recorded from insular waters in Fernando de Noronha Archipelago, northeastern Brazil. Our phylogenetic analyses and species delimitation methods strongly supported the establishment of Ulva kanagawae sp. nov. The species traditionally cited for southeastern Brazil, U. flexuosa, U. linza, U. rigida and U. paradoxa, proved to be misapplied names of U. tepida, U. aragoënsis, U. ohnoi/U. lactuca and U. torta, respectively. One taxon, Ulva sp., remains unnamed and needs further studies. Ulva chaugulei and U. tanneri, both considered here as cryptogenic species, are new occurrences for Brazil expanding their geographic distribution to the Atlantic Ocean and western Atlantic Ocean, respectively. In addition, our analysis of sequences from type materials revealed that U. pseudo-ohnoi is a heterotypic synonym of U. conglobata. This first systematic molecular study of Ulva species in Brazil points out that more extensive sampling is needed to reveal the true diversity of the genus in Brazilian waters.KEYWORDS: PhylogenyrbcLtaxonomytufA ACKNOWLEDGEMENTSWe thank Joel Campos De-Paula, Renan Oliveira, Érico Atílio Teles, Mutue Toyota Fujii, Cristina Aparecida Nassar, Mateus Henrique Oliveira Pinto, Luanda Soares, Fábio Nauer, Maria Irisvalda L. G. Cavalcanti, Helena R. Fragoso, Bruno Sandy and Souto Neto for field assistance.DISCLOSURE STATEMENTThere are no conflicts of interest to be declared by the authors.Supplementary InformationSupplemental data for this article can be accessed online at https://doi.org/10.1080/00318884.2023.2243433Additional informationFundingThis work was supported by São Paulo Research Foundation (FAPESP, 2018/06085-1) to VC, and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), Productivity Fellowship (proc. 304141/2020-8) to VC. This study was financed in part by the Rio de Janeiro Research Foundation (Biota FAPERJ, E-26/110.019/2011) to MBB-B and Coordenação de Aperfeiçoamento de Pessoal de Nível Superior – Brasil (CAPES) – Finance Code 001 (scholarships to VARC, NTM and SLAS).
【摘要】绿藻属Ulva是分布最广泛的大藻属之一。由于其形态简单,其分类存在问题。利用分子数据对该属植物多样性的研究取得了很大进展,导致了物种分类地位的变化,以及物种复合体和隐种的识别。在这里,我们使用分子数据重新评估了巴西东南部的Ulva物种。我们发现了10个分类群,其中只有3个分类群的分子数据得到了证实:U. compressa、U. lactuca和U. ohnoi,后者是最近在巴西东北部Fernando de Noronha群岛的岛屿水域记录到的。我们的系统发育分析和物种划分方法有力地支持了Ulva kanagawae sp. 11 .的建立。传统上被引用为巴西东南部的物种,U. flexuosa, U. linza, U. rigida和U. paradoxa,被证明是U. tepida, U. aragoënsis, U. ohnoi/U. tepida的错误名称。和U. torta。其中一个分类单元Ulva sp仍未命名,需要进一步研究。Ulva chauglei和U. tanneri都是巴西的新物种,它们的地理分布范围分别扩展到大西洋和西大西洋。此外,我们的模式材料序列分析表明,拟大叶是大叶的异型同义种。这项对巴西Ulva物种的首次系统分子研究指出,需要更广泛的采样来揭示巴西水域中该属的真正多样性。我们感谢Joel Campos De-Paula、Renan Oliveira、Érico Atílio Teles、Mutue Toyota Fujii、Cristina aprecida Nassar、Mateus Henrique Oliveira Pinto、Luanda Soares、Fábio Nauer、Maria Irisvalda L. G. Cavalcanti、Helena R. Fragoso、Bruno Sandy和Souto Neto的实地协助。声明作者不存在任何利益冲突。本文由圣保罗研究基金会(FAPESP, 2018/06085-1)和国家环境保护研究委员会Científico e Tecnológico (CNPq)、生产力研究基金(proc. 304141/2020-8)资助。本研究的部分资金由里约热内卢研究基金会(Biota FAPERJ, E-26/110.019/2011)提供给巴西MBB-B和巴西Superior (CAPES)财务代码001 (VARC、NTM和SLAS奖学金)。
{"title":"Revealing the diversity of the genus <i>Ulva</i> (Ulvales, Chlorophyta) in southeastern Brazil, with a description of <i>Ulva kanagawae sp. nov.</i>","authors":"Victor Andrei Rodrigues Carneiro, Nuno Tavares Martins, Sebastiana Lidielda Albuquerque da Silva, Maria Beatriz de Barros-Barreto, Sonia Barreto Pereira, Valéria Cassano","doi":"10.1080/00318884.2023.2243433","DOIUrl":"https://doi.org/10.1080/00318884.2023.2243433","url":null,"abstract":"ABSTRACTThe green algal genus Ulva is one of the most widely distributed macroalgal genera. The taxonomy of Ulva is problematic due to its simple morphology. The study of the diversity of this genus has undergone great advances using molecular data, leading to changes in the taxonomic status of species, and the recognition of species complexes and cryptic species. Here we reassessed Ulva species from southeastern Brazil using molecular data. We recognized 10 taxa, among which only three previously reported species were confirmed by molecular data: U. compressa, U. lactuca and U. ohnoi, the latter recently recorded from insular waters in Fernando de Noronha Archipelago, northeastern Brazil. Our phylogenetic analyses and species delimitation methods strongly supported the establishment of Ulva kanagawae sp. nov. The species traditionally cited for southeastern Brazil, U. flexuosa, U. linza, U. rigida and U. paradoxa, proved to be misapplied names of U. tepida, U. aragoënsis, U. ohnoi/U. lactuca and U. torta, respectively. One taxon, Ulva sp., remains unnamed and needs further studies. Ulva chaugulei and U. tanneri, both considered here as cryptogenic species, are new occurrences for Brazil expanding their geographic distribution to the Atlantic Ocean and western Atlantic Ocean, respectively. In addition, our analysis of sequences from type materials revealed that U. pseudo-ohnoi is a heterotypic synonym of U. conglobata. This first systematic molecular study of Ulva species in Brazil points out that more extensive sampling is needed to reveal the true diversity of the genus in Brazilian waters.KEYWORDS: PhylogenyrbcLtaxonomytufA ACKNOWLEDGEMENTSWe thank Joel Campos De-Paula, Renan Oliveira, Érico Atílio Teles, Mutue Toyota Fujii, Cristina Aparecida Nassar, Mateus Henrique Oliveira Pinto, Luanda Soares, Fábio Nauer, Maria Irisvalda L. G. Cavalcanti, Helena R. Fragoso, Bruno Sandy and Souto Neto for field assistance.DISCLOSURE STATEMENTThere are no conflicts of interest to be declared by the authors.Supplementary InformationSupplemental data for this article can be accessed online at https://doi.org/10.1080/00318884.2023.2243433Additional informationFundingThis work was supported by São Paulo Research Foundation (FAPESP, 2018/06085-1) to VC, and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), Productivity Fellowship (proc. 304141/2020-8) to VC. This study was financed in part by the Rio de Janeiro Research Foundation (Biota FAPERJ, E-26/110.019/2011) to MBB-B and Coordenação de Aperfeiçoamento de Pessoal de Nível Superior – Brasil (CAPES) – Finance Code 001 (scholarships to VARC, NTM and SLAS).","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":"25 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134949726","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-07-17DOI: 10.1080/00318884.2023.2225309
P. Gabrielson, Jeffery R. Hughey, V. Peña, J. Richards, G. Saunders, B. Twist, T. Farr, W. Nelson
ABSTRACT To address the taxonomic uncertainty of Sporolithon species named in the early to mid-20th century, targeted PCR sequencing was performed on eight historical type specimens and on recently collected specimens. Six type specimens amplified for the rbcL gene and were Sanger sequenced yielding sequences ranging in length from 118 to 280 base pairs (bp). One, S. australasicum, failed to amplify and another, S. howei, was amplified for the psbA gene yielding a sequence 544 bp in length. The 118 bp long rbcL sequence of the lectotype of S. crassiramosum showed that it is a later, heterotypic synonym of S. molle. The rbcL sequences of type specimens of S. episoredion, S. schmidtii, S. sibogae and S. timorense ranged from 118 to 228 bp, and each is a distinct species. The 544 bp long psbA sequence of S. howei is also unique. The 280 bp long rbcL sequence of the lectotype of S. durum did not match any sequence with that name in any public repository, including the previously published complete plastome and mitogenome sequences. However, it was identical in sequence to a specimen in GenBank from the southern coast of Western Australia as well as several other sequences generated from field-collected specimens from the states of South Australia and Western Australia. The rhodolith specimens from New Zealand previously called S. durum are S. nodosum sp. nov. The species is endemic to New Zealand. The epilithic specimens from New Zealand previously called S. durum are S. immotum sp. nov., which is also found along the southeastern coast of Australia. Sporolithon crypticum sp. nov. is described from the southern coast of Western Australia. RAxML and Bayesian phylogenetic analyses of Sporolithon psbA and rbcL sequences are congruent between the two plastid encoded genes. DNA sequencing of type specimens of species of corallines is demonstrated to be the only reliable method to correctly apply names.
{"title":"Asia Pacific Sporolithon (Corallinophycidae, Rhodophyta) species revised based on DNA sequencing of type specimens and including S. crypticum sp. nov., S. immotum sp. nov. and S. nodosum sp. nov.","authors":"P. Gabrielson, Jeffery R. Hughey, V. Peña, J. Richards, G. Saunders, B. Twist, T. Farr, W. Nelson","doi":"10.1080/00318884.2023.2225309","DOIUrl":"https://doi.org/10.1080/00318884.2023.2225309","url":null,"abstract":"ABSTRACT To address the taxonomic uncertainty of Sporolithon species named in the early to mid-20th century, targeted PCR sequencing was performed on eight historical type specimens and on recently collected specimens. Six type specimens amplified for the rbcL gene and were Sanger sequenced yielding sequences ranging in length from 118 to 280 base pairs (bp). One, S. australasicum, failed to amplify and another, S. howei, was amplified for the psbA gene yielding a sequence 544 bp in length. The 118 bp long rbcL sequence of the lectotype of S. crassiramosum showed that it is a later, heterotypic synonym of S. molle. The rbcL sequences of type specimens of S. episoredion, S. schmidtii, S. sibogae and S. timorense ranged from 118 to 228 bp, and each is a distinct species. The 544 bp long psbA sequence of S. howei is also unique. The 280 bp long rbcL sequence of the lectotype of S. durum did not match any sequence with that name in any public repository, including the previously published complete plastome and mitogenome sequences. However, it was identical in sequence to a specimen in GenBank from the southern coast of Western Australia as well as several other sequences generated from field-collected specimens from the states of South Australia and Western Australia. The rhodolith specimens from New Zealand previously called S. durum are S. nodosum sp. nov. The species is endemic to New Zealand. The epilithic specimens from New Zealand previously called S. durum are S. immotum sp. nov., which is also found along the southeastern coast of Australia. Sporolithon crypticum sp. nov. is described from the southern coast of Western Australia. RAxML and Bayesian phylogenetic analyses of Sporolithon psbA and rbcL sequences are congruent between the two plastid encoded genes. DNA sequencing of type specimens of species of corallines is demonstrated to be the only reliable method to correctly apply names.","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":" ","pages":""},"PeriodicalIF":1.6,"publicationDate":"2023-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46745492","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-07-04DOI: 10.1080/00318884.2023.2223796
J. A. Tardivo Kubis, F. Rodríguez, A. Rossignoli, P. Riobó, Delfina Aguiar Juárez, E. Sar, Inés Sunesen
ABSTRACT In the framework of a monitoring program of harmful microalgae from the marine coastal waters of Buenos Aires Province to mitigate the impacts of harmful algal blooms on the aquaculture and marine life and to protect human health, a strain of Alexandrium affine (LPCc012) was isolated. Alexandrium affine is a worldwide distributed species reported as harmful algal bloom-forming, with toxin- and non-toxin-producing strains. Field and cultured materials from Buenos Aires Province were examined using light and scanning electron microscopy, morphologically and genetically (LSU rDNA partial sequencing) characterized, and compared with material from different regions worldwide. Toxin analyses using ultra-performance liquid chromatography with fluorescence detection and liquid chromatography-mass spectrometry methods failed to detect any paralytic or lipophilic shellfish toxins. This is the first record of A. affine from Argentina.
{"title":"Morphological, molecular and toxinological analyses of Alexandrium affine (Dinophyceae) from marine coastal waters of Buenos Aires Province (Argentina)","authors":"J. A. Tardivo Kubis, F. Rodríguez, A. Rossignoli, P. Riobó, Delfina Aguiar Juárez, E. Sar, Inés Sunesen","doi":"10.1080/00318884.2023.2223796","DOIUrl":"https://doi.org/10.1080/00318884.2023.2223796","url":null,"abstract":"ABSTRACT In the framework of a monitoring program of harmful microalgae from the marine coastal waters of Buenos Aires Province to mitigate the impacts of harmful algal blooms on the aquaculture and marine life and to protect human health, a strain of Alexandrium affine (LPCc012) was isolated. Alexandrium affine is a worldwide distributed species reported as harmful algal bloom-forming, with toxin- and non-toxin-producing strains. Field and cultured materials from Buenos Aires Province were examined using light and scanning electron microscopy, morphologically and genetically (LSU rDNA partial sequencing) characterized, and compared with material from different regions worldwide. Toxin analyses using ultra-performance liquid chromatography with fluorescence detection and liquid chromatography-mass spectrometry methods failed to detect any paralytic or lipophilic shellfish toxins. This is the first record of A. affine from Argentina.","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":"62 1","pages":"341 - 351"},"PeriodicalIF":1.6,"publicationDate":"2023-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45832836","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-07-04DOI: 10.1080/00318884.2023.2242719
B. Alfonso, Olga Ortega-Martínez, José Carlos Hernández, M. Sansón, C. Sangil, Ricardo T. Pereyra
ABSTRACT Genetic sequencing of herbarium specimens provides invaluable information on species genetic history. However, several factors hinder the extraction of high-quality DNA from long-term preserved specimens. Our goal was to study the genetic variability of the endemic and habitat-forming macroalga Gelidium canariense over the last 40 years using the mitochondrial intergenic marker cox2-3 spacer. We also studied the genetic diversity at the mesoscale (<100 km), i.e. between two localities on the north coast of Tenerife and at the macroscale (>100 km) using specimens collected on the island of La Palma. We found the presence of the same haplotype at the same location for the last 40 years. This haplotype also coincided within populations of Puerto de la Cruz and Garachico (Tenerife Island) and between populations of different islands (Tenerife and La Palma). This study provides a baseline (i.e. extraction method, PCR protocol for cox2-3 spacer molecular marker, level of DNA degradation of herbarium samples) of the genetic characterization of G. canariense that can be used in future molecular studies to better understand the distribution of genetic diversity in this vulnerable species.
植物标本馆标本的基因测序为物种遗传史提供了宝贵的信息。然而,有几个因素阻碍了从长期保存的标本中提取高质量的DNA。本研究的目的是利用线粒体基因间标记cox2-3间隔物研究加那利胶藻(Gelidium canariense)近40年来的遗传变异。我们还利用在拉帕尔马岛采集的样本,在中尺度(100公里)研究了遗传多样性。在过去的40年里,我们在同一地点发现了相同的单倍型。这种单倍型在Puerto de la Cruz和Garachico(特内里费岛)的人群中以及不同岛屿(特内里费岛和拉帕尔马岛)的人群中也有重合。本研究为金丝雀遗传特征提供了一个基线(即提取方法、cox2-3间隔分子标记PCR方案、标本DNA降解水平),可用于未来的分子研究,以更好地了解这一脆弱物种的遗传多样性分布。
{"title":"Tracing genetic variation of Gelidium canariense (Rhodophyta) based on new and historical collections","authors":"B. Alfonso, Olga Ortega-Martínez, José Carlos Hernández, M. Sansón, C. Sangil, Ricardo T. Pereyra","doi":"10.1080/00318884.2023.2242719","DOIUrl":"https://doi.org/10.1080/00318884.2023.2242719","url":null,"abstract":"ABSTRACT Genetic sequencing of herbarium specimens provides invaluable information on species genetic history. However, several factors hinder the extraction of high-quality DNA from long-term preserved specimens. Our goal was to study the genetic variability of the endemic and habitat-forming macroalga Gelidium canariense over the last 40 years using the mitochondrial intergenic marker cox2-3 spacer. We also studied the genetic diversity at the mesoscale (<100 km), i.e. between two localities on the north coast of Tenerife and at the macroscale (>100 km) using specimens collected on the island of La Palma. We found the presence of the same haplotype at the same location for the last 40 years. This haplotype also coincided within populations of Puerto de la Cruz and Garachico (Tenerife Island) and between populations of different islands (Tenerife and La Palma). This study provides a baseline (i.e. extraction method, PCR protocol for cox2-3 spacer molecular marker, level of DNA degradation of herbarium samples) of the genetic characterization of G. canariense that can be used in future molecular studies to better understand the distribution of genetic diversity in this vulnerable species.","PeriodicalId":20140,"journal":{"name":"Phycologia","volume":"62 1","pages":"383 - 390"},"PeriodicalIF":1.6,"publicationDate":"2023-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44410336","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}