Pub Date : 2025-06-01Epub Date: 2025-06-28DOI: 10.1007/s12298-025-01616-z
Gizem Şafak Baransel, Oğuz Yücel, Eren Yıldırım, Göksenin Kalyon, Serkan Emik, Ayşe Erol, Neslihan Turgut Kara
The study investigated the effects and potential applications of green-synthesized silver nanoparticles (AgNPs) on cotton plants under in vitro drought stress. AgNPs were synthesized using cotton seed oil cake extract (CSOCE) as a stabilizing and reducing agent. The secondary metabolite content of CSOCE was analyzed using High Performance Liquid Chromatography (HPLC). Characterization of synthesized AgNPs was performed using Dynamic Light Scattering (DLS), polydispersity index (PDI), Zeta Potential (ZP), Scanning Electron Microscopy and Energy Dispersive X-Ray Spectroscopy (SEM-EDS), X-Ray Diffraction Analysis (XRD), Ultraviolet-Visible Light Spectroscopy (UV-Vis spectroscopy), and Fourier Transform Infrared Spectrometry (FTIR) analyses. According to SEM, the nanoparticle sizes varied between 50 and 100 nm. ZP was - 28.7 mV and PDI value was 0.65 according to DLS results. The experimental groups were: (1) MS medium (control group), (2) PEG, (3) AgNP, and (4) PEG + AgNP. Plants were transferred to the respective media, cultured for three days, and subsequently analyzed. Morphological parameters including root number, root and shoot lengths, and leaf surface area were measured, while physiological traits such as relative water content, biomass accumulation, osmolyte accumulation, and photosynthetic pigment contents were assessed. Molecular analyses were conducted to examine the relative gene expression of drought stress-associated genes, including CAT, POD, Cu/Zn SOD, MnSOD, MPK17, CAX2, and IDI-1. The results demonstrated that the application of AgNPs alleviated the adverse effects of in vitro drought stress on Gossypium hirsutum plants. These findings suggest that green synthesized AgNPs hold significant potential as agents to mitigate drought stress in plants.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-025-01616-z.
{"title":"Green synthesized silver nanoparticles enhance drought tolerance in cotton plants cultured in vitro.","authors":"Gizem Şafak Baransel, Oğuz Yücel, Eren Yıldırım, Göksenin Kalyon, Serkan Emik, Ayşe Erol, Neslihan Turgut Kara","doi":"10.1007/s12298-025-01616-z","DOIUrl":"10.1007/s12298-025-01616-z","url":null,"abstract":"<p><p>The study investigated the effects and potential applications of green-synthesized silver nanoparticles (AgNPs) on cotton plants under in vitro drought stress. AgNPs were synthesized using cotton seed oil cake extract (CSOCE) as a stabilizing and reducing agent. The secondary metabolite content of CSOCE was analyzed using High Performance Liquid Chromatography (HPLC). Characterization of synthesized AgNPs was performed using Dynamic Light Scattering (DLS), polydispersity index (PDI), Zeta Potential (ZP), Scanning Electron Microscopy and Energy Dispersive X-Ray Spectroscopy (SEM-EDS), X-Ray Diffraction Analysis (XRD), Ultraviolet-Visible Light Spectroscopy (UV-Vis spectroscopy), and Fourier Transform Infrared Spectrometry (FTIR) analyses. According to SEM, the nanoparticle sizes varied between 50 and 100 nm. ZP was - 28.7 mV and PDI value was 0.65 according to DLS results. The experimental groups were: (1) MS medium (control group), (2) PEG, (3) AgNP, and (4) PEG + AgNP. Plants were transferred to the respective media, cultured for three days, and subsequently analyzed. Morphological parameters including root number, root and shoot lengths, and leaf surface area were measured, while physiological traits such as relative water content, biomass accumulation, osmolyte accumulation, and photosynthetic pigment contents were assessed. Molecular analyses were conducted to examine the relative gene expression of drought stress-associated genes, including <i>CAT</i>, <i>POD</i>, <i>Cu/Zn SOD</i>, <i>MnSOD</i>, <i>MPK17</i>, <i>CAX2</i>, and <i>IDI-1</i>. The results demonstrated that the application of AgNPs alleviated the adverse effects of in vitro drought stress on <i>Gossypium hirsutum</i> plants. These findings suggest that green synthesized AgNPs hold significant potential as agents to mitigate drought stress in plants.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-025-01616-z.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":"31 6","pages":"959-978"},"PeriodicalIF":3.3,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12314283/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144776069","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Soil salinity is one of the main environmental limiting factors for plant growth and production. Sodium salt (NaCl) is the main salt in saline soils. The high-affinity K+ transporter (HKT1) is a Na+-preferential transporter identified in multiple glycophyte plants, and it participates in salt tolerance through shoot Na+ extrusion. However, there has been limited research on the identification and characterization of HKT1 from halophytes. In this study, SlHKT1.1 was cloned and functionally characterized from the halophytic shrub Salix linearistipularis. Sequence analysis revealed that SlHKT1.1 is a member of HKT1. Transient expression of SlHKT1.1 in tobacco leaves showed that it as a plasma membrane protein. Under NaCl and KCl stress, SlHKT1.1 overexpression severely inhibited the root growth of transgenic poplar seedlings. Ion content measurements revealed significantly higher Na+ content in the roots of transgenic poplar seedlings than in wild-type roots. Correlation analysis showed that significant root growth inhibition was associated with higher Na+ accumulation in roots in transgenic poplar seedlings. Analyses of K+ content and flux rate revealed that SlHKT1.1 was not directly involved in the transport and accumulation of K+. These studies suggest that SlHKT1.1, a plasma membrane Na+-preferential transporter from S. linearistipularis, can be used for enhancing plant salt tolerance via tissue- or cell-specific expression.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-025-01605-2.
{"title":"Characterization of the Na<sup>+</sup>-preferential transporter HKT1.1 from halophyte shrub <i>Salix linearistipularis</i>.","authors":"Shan Fu, Xiuwei Chen, Yanhong Jiang, Shengyue Dai, Haizhen Zhang, Shuang Feng, Aimin Zhou","doi":"10.1007/s12298-025-01605-2","DOIUrl":"10.1007/s12298-025-01605-2","url":null,"abstract":"<p><p>Soil salinity is one of the main environmental limiting factors for plant growth and production. Sodium salt (NaCl) is the main salt in saline soils. The high-affinity K<sup>+</sup> transporter (HKT1) is a Na<sup>+</sup>-preferential transporter identified in multiple glycophyte plants, and it participates in salt tolerance through shoot Na<sup>+</sup> extrusion. However, there has been limited research on the identification and characterization of HKT1 from halophytes. In this study, SlHKT1.1 was cloned and functionally characterized from the halophytic shrub <i>Salix linearistipularis</i>. Sequence analysis revealed that SlHKT1.1 is a member of HKT1. Transient expression of SlHKT1.1 in tobacco leaves showed that it as a plasma membrane protein. Under NaCl and KCl stress, <i>SlHKT1.1</i> overexpression severely inhibited the root growth of transgenic poplar seedlings. Ion content measurements revealed significantly higher Na<sup>+</sup> content in the roots of transgenic poplar seedlings than in wild-type roots. Correlation analysis showed that significant root growth inhibition was associated with higher Na<sup>+</sup> accumulation in roots in transgenic poplar seedlings. Analyses of K<sup>+</sup> content and flux rate revealed that SlHKT1.1 was not directly involved in the transport and accumulation of K<sup>+</sup>. These studies suggest that SlHKT1.1, a plasma membrane Na<sup>+</sup>-preferential transporter from <i>S. linearistipularis</i>, can be used for enhancing plant salt tolerance via tissue- or cell-specific expression.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-025-01605-2.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":"31 5","pages":"823-833"},"PeriodicalIF":3.4,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12185842/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144497610","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-05-01Epub Date: 2025-06-10DOI: 10.1007/s12298-025-01608-z
Mohamed Taieb Bouteraa, Walid Ben Romdhane, Alina Wiszniewska, Narjes Baazaoui, Anis Ben Hsouna, Miroslava Kačániová, Afif Hassairi, Rania Ben Saad
The GASA gene family (Gibberellic Acid-Stimulated Arabidopsis) comprises plant-specific genes that play crucial roles in plant development and defense mechanisms against a plethora of abiotic and biotic stressors. As revealed in our previous study, TdGASA19 transcripts from durum wheat are induced by a range of stressors and its heterologous expression improved stress tolerance in yeast cells. Here we have focused on TdGASA19 role in its host species, Triticum turgidum var. durum. We examined the expression profile of the TdGASA19 gene and found out that it is upregulated in response to environmental stimuli and phytohormones, such as SA and IAA, indicating that the TdGASA19 gene may control stress and hormone signaling pathways in durum wheat. We subsequently engineered marker-free transgenic durum wheat lines overexpressing the TdGASA19 gene, which exhibited improved tolerance to drought and salt stress and yielded more than non-transgenic plants (NT). TdGASA19 regulated both scavenging capacity of the antioxidant enzyme system and the activation of five stress-related genes that act as positive regulators of salt or drought stress tolerance. In light of our results, TdGASA19 emerges as a promising novel gene with potential for further functional analysis and exploitation in molecular breeding to enhance environmental stress tolerance in grain crops.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-025-01608-z.
GASA基因家族(赤霉素酸刺激拟南芥)包括植物特异性基因,在植物发育和防御过多的非生物和生物胁迫机制中起着至关重要的作用。我们之前的研究表明,硬粒小麦的TdGASA19转录本可被一系列胁迫源诱导,其异源表达可提高酵母细胞的抗逆性。本文主要研究了TdGASA19在其寄主Triticum turgidum var. durum中的作用。我们检测了TdGASA19基因的表达谱,发现其在环境刺激和植物激素(如SA和IAA)的作用下表达上调,表明TdGASA19基因可能控制硬粒小麦的胁迫和激素信号通路。随后,我们设计了无标记转基因过表达TdGASA19基因的硬粒小麦品系,其对干旱和盐胁迫的耐受性提高,产量高于非转基因植物(NT)。TdGASA19既调节抗氧化酶系统的清除能力,也调节五种胁迫相关基因的激活,这些基因是盐或干旱胁迫耐受的正向调节因子。鉴于我们的研究结果,TdGASA19是一个有前景的新基因,具有进一步的功能分析和分子育种潜力,以提高粮食作物的环境胁迫抗性。补充信息:在线版本包含补充资料,提供地址为10.1007/s12298-025-01608-z。
{"title":"Enhancing salt and drought tolerance in marker-free transgenic durum wheat through <i>TdGASA19</i> overexpression.","authors":"Mohamed Taieb Bouteraa, Walid Ben Romdhane, Alina Wiszniewska, Narjes Baazaoui, Anis Ben Hsouna, Miroslava Kačániová, Afif Hassairi, Rania Ben Saad","doi":"10.1007/s12298-025-01608-z","DOIUrl":"10.1007/s12298-025-01608-z","url":null,"abstract":"<p><p>The <i>GASA</i> gene family (<i>Gibberellic Acid-Stimulated Arabidopsis</i>) comprises plant-specific genes that play crucial roles in plant development and defense mechanisms against a plethora of abiotic and biotic stressors. As revealed in our previous study, <i>TdGASA19</i> transcripts from durum wheat are induced by a range of stressors and its heterologous expression improved stress tolerance in yeast cells. Here we have focused on <i>TdGASA19</i> role in its host species, <i>Triticum turgidum</i> var. durum. We examined the expression profile of the <i>TdGASA19</i> gene and found out that it is upregulated in response to environmental stimuli and phytohormones, such as SA and IAA, indicating that the <i>TdGASA19</i> gene may control stress and hormone signaling pathways in durum wheat. We subsequently engineered marker-free transgenic durum wheat lines overexpressing the <i>TdGASA19</i> gene, which exhibited improved tolerance to drought and salt stress and yielded more than non-transgenic plants (NT). <i>TdGASA19</i> regulated both scavenging capacity of the antioxidant enzyme system and the activation of five stress-related genes that act as positive regulators of salt or drought stress tolerance. In light of our results, <i>TdGASA19</i> emerges as a promising novel gene with potential for further functional analysis and exploitation in molecular breeding to enhance environmental stress tolerance in grain crops.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-025-01608-z.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":"31 5","pages":"739-751"},"PeriodicalIF":3.4,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12185810/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144497677","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-05-01Epub Date: 2025-05-15DOI: 10.1007/s12298-025-01599-x
S Jyothsna, Minu M Nair, Manickavelu Alagu
Stem rust of wheat, caused by the fungal pathogen Puccinia graminis f. sp. tritici (Pgt), is an economically significant disease affecting wheat production globally. The recent progress in high-throughput sequencing technology has uncovered the crucial role of non-coding RNAs, an emerging yet influential regulatory genetic element modulating plant response against abiotic and biotic stresses. Long non-coding RNAs (lncRNAs) and microRNAs (miRNAs) are prominent regulatory nRNAs, renowned for their ability to finely tune plant gene expression across transcriptional, post-transcriptional, and epigenetic layers. The current study adopts a comprehensive transcriptome sequencing approach to identify stem rust-responsive lncRNAs from near isogenic lines of wheat introgressed with resistance gene Sr36, along with their susceptible variety, HD2329. A meticulous lncRNA selection criterion yielded a total of 948 Pgt-responsive lncRNAs. The detection of 11 lncRNAs acting as miRNA precursors, along with 590 miRNA-lncRNA target interactions further highlights the dynamic interplay between miRNAs and lncRNAs during Pgt infection in wheat. Moreover, the functional annotation of lncRNA targets unveiled the prevalence of genes such as LRR receptor-like serine/threonine-protein kinases, disease resistance protein RPM1-like, chitin elicitor receptor kinase, nudix hydrolases and NAC transcription factors, that are involved in discrete biological pathways crucial for plant stress responses. Detection of 37 SSR marker-bearing lncRNAs along with the interaction of lncRNAs with disease-associated transcription factors such as C2H2, ERF, GATA and Dof, further elevate the significance of the study. The study unveils potential functional divergence within lncRNAs and serves as a fine resource that can be harnessed to elucidate the interplay of coding and non-coding RNAs governing wheat-fungal interactions.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-025-01599-x.
{"title":"Functional divergence of LncRNAs in wheat-fungal interactions: insights from stem rust-responsive wheat transcriptomes.","authors":"S Jyothsna, Minu M Nair, Manickavelu Alagu","doi":"10.1007/s12298-025-01599-x","DOIUrl":"10.1007/s12298-025-01599-x","url":null,"abstract":"<p><p>Stem rust of wheat, caused by the fungal pathogen <i>Puccinia graminis</i> f. sp. <i>tritici</i> (<i>Pgt</i>), is an economically significant disease affecting wheat production globally. The recent progress in high-throughput sequencing technology has uncovered the crucial role of non-coding RNAs, an emerging yet influential regulatory genetic element modulating plant response against abiotic and biotic stresses. Long non-coding RNAs (lncRNAs) and microRNAs (miRNAs) are prominent regulatory nRNAs, renowned for their ability to finely tune plant gene expression across transcriptional, post-transcriptional, and epigenetic layers. The current study adopts a comprehensive transcriptome sequencing approach to identify stem rust-responsive lncRNAs from near isogenic lines of wheat introgressed with resistance gene <i>Sr36</i>, along with their susceptible variety, HD2329. A meticulous lncRNA selection criterion yielded a total of 948 <i>Pgt</i>-responsive lncRNAs. The detection of 11 lncRNAs acting as miRNA precursors, along with 590 miRNA-lncRNA target interactions further highlights the dynamic interplay between miRNAs and lncRNAs during <i>Pgt</i> infection in wheat. Moreover, the functional annotation of lncRNA targets unveiled the prevalence of genes such as LRR receptor-like serine/threonine-protein kinases, disease resistance protein RPM1-like, chitin elicitor receptor kinase, nudix hydrolases and NAC transcription factors, that are involved in discrete biological pathways crucial for plant stress responses. Detection of 37 SSR marker-bearing lncRNAs along with the interaction of lncRNAs with disease-associated transcription factors such as C2H2, ERF, GATA and Dof, further elevate the significance of the study. The study unveils potential functional divergence within lncRNAs and serves as a fine resource that can be harnessed to elucidate the interplay of coding and non-coding RNAs governing wheat-fungal interactions.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-025-01599-x.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":"31 5","pages":"709-727"},"PeriodicalIF":3.4,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12185806/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144497679","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Food plants provide vital nutrients for humans and are the basis for their survival. The pigments in food plants not only improve their sensory value, but also increase their medicinal and nutritional value, which has a positive effect on human health. Light can influence the accumulation of pigments in food plants, and different light qualities, intensities and cycles have different effects on the accumulation of different pigments. For example, blue light can promote the production of chlorophyll and anthocyanins, while red light favours the accumulation of carotenoids. With the development of plantation agriculture, LED light sources are gradually being used for the market-orientated production of food crops. In recent years, research has shown that non-coding RNAs such as miRNA and lncRNA significantly influence the process of light-regulated pigment accumulation. Non-coding RNA can modulate the expression of genes related to pigment metabolism and thus influence pigment accumulation. Investigating the effect of LED light on the expression of non-coding RNA can further elucidate the molecular mechanism of light regulation of pigment accumulation and provide a new theoretical basis for the precise regulation of pigment accumulation. Therefore, we summarised the effects of LED light quality, intensity and period on pigments in food plants and elucidated the regulatory role of LED light on non-coding RNAs related to pigment metabolism in food plants, which theoretically supports the application of LED light sources in food plants.
{"title":"Illuminating the harvest: the regulatory effects of LEDs on pigment accumulation in various food crops.","authors":"Zhang Yaoyuan, Nyok-Sean Lau, Sreeramanan Subramaniam","doi":"10.1007/s12298-025-01596-0","DOIUrl":"10.1007/s12298-025-01596-0","url":null,"abstract":"<p><p>Food plants provide vital nutrients for humans and are the basis for their survival. The pigments in food plants not only improve their sensory value, but also increase their medicinal and nutritional value, which has a positive effect on human health. Light can influence the accumulation of pigments in food plants, and different light qualities, intensities and cycles have different effects on the accumulation of different pigments. For example, blue light can promote the production of chlorophyll and anthocyanins, while red light favours the accumulation of carotenoids. With the development of plantation agriculture, LED light sources are gradually being used for the market-orientated production of food crops. In recent years, research has shown that non-coding RNAs such as miRNA and lncRNA significantly influence the process of light-regulated pigment accumulation. Non-coding RNA can modulate the expression of genes related to pigment metabolism and thus influence pigment accumulation. Investigating the effect of LED light on the expression of non-coding RNA can further elucidate the molecular mechanism of light regulation of pigment accumulation and provide a new theoretical basis for the precise regulation of pigment accumulation. Therefore, we summarised the effects of LED light quality, intensity and period on pigments in food plants and elucidated the regulatory role of LED light on non-coding RNAs related to pigment metabolism in food plants, which theoretically supports the application of LED light sources in food plants.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":"31 5","pages":"693-708"},"PeriodicalIF":3.4,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12185808/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144497681","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
This study investigates how two harpin proteins, HrpZ and Hpa1, modulate plant immunity as potential alternatives to pesticides. Despite the established importance of SA in immunity, its regulatory complexity and gene expression dynamics are partially elucidated. We examined the effect of HrpZ and Hpa1 on the SA signalling pathway and the expression of seven marker genes (NPR1, EDS1, CAD1, NSL1, AED3, AED4, WRKY8) identified through existing microarray dataset analysis and analysed by qRT-PCR and HPLC. Our findings reveal distinct modes of action: HrpZ strongly activates SA-mediated immunity by upregulating SA levels and SA-responsive genes. Conversely, Hpa1 does not significantly impact SA levels but upregulates AED3 and AED4, suggesting an alternative, SA-independent defence mechanism. This research provides valuable insights into harpin-induced plant immunity, paving the way for targeted biostimulant development in sustainable agriculture.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-025-01601-6.
{"title":"Distinct immune pathways activated by harpin proteins in <i>Sorghum bicolor</i>.","authors":"Jaimini Patoliya, Khushali Thaker, Khushbu Rabadiya, Jalpa Patel, Tithi Trivedi, Saumya Patel, Nayan Jain, Prasant Kumar, Rushikesh Joshi","doi":"10.1007/s12298-025-01601-6","DOIUrl":"10.1007/s12298-025-01601-6","url":null,"abstract":"<p><p>This study investigates how two harpin proteins, HrpZ and Hpa1, modulate plant immunity as potential alternatives to pesticides. Despite the established importance of SA in immunity, its regulatory complexity and gene expression dynamics are partially elucidated. We examined the effect of HrpZ and Hpa1 on the SA signalling pathway and the expression of seven marker genes (<i>NPR1</i>, <i>EDS1</i>, <i>CAD1</i>, <i>NSL1</i>, <i>AED3</i>, <i>AED4</i>, <i>WRKY8</i>) identified through existing microarray dataset analysis and analysed by qRT-PCR and HPLC. Our findings reveal distinct modes of action: HrpZ strongly activates SA-mediated immunity by upregulating SA levels and SA-responsive genes. Conversely, Hpa1 does not significantly impact SA levels but upregulates <i>AED3</i> and <i>AED4</i>, suggesting an alternative, SA-independent defence mechanism. This research provides valuable insights into harpin-induced plant immunity, paving the way for targeted biostimulant development in sustainable agriculture.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-025-01601-6.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":"31 5","pages":"785-793"},"PeriodicalIF":3.4,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12185832/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144497675","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The structural complexity of plant proteins, particularly receptor-like kinases, has garnered significant attention in recent research. This research identifies Physcomitrium patens ERECTA-like receptor 1 (PpERL1) as a new guanylate cyclase (GC) within the cytoplasmic kinase domain by examining its structural and functional properties. Comprehensive sequence alignment analyses reveal substantial variability among ERECTA-like proteins from mosses in contrast to vascular plants, while GC motifs display remarkable conservation, suggesting a critical functional relevance. In vitro tests validate the GC activity of recombinant PpERL1, with key residue substitutions at positions 1 and 14 leading to a decrease in GC activity. Notably, cGMP does not impact PpERL1's kinase activity, while inhibits its enzymatic function, contrasting with regulatory mechanisms observed in vascular plant GCs. Independent regulatory mechanisms are shown by calcium ions increasing GC activity without affecting kinase functioning. These results demonstrate an evolutionary divergence in the regulatory interactions between GC and kinase domains in mosses versus vascular plants, reflecting adaptive strategies unique to non-vascular plant lineages.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-025-01606-1.
{"title":"Guanylate cyclase activity in moss: revisiting the role of ERECTA-like receptors.","authors":"Klaudia Hammer, Brygida Świeżawska-Boniecka, Mateusz Kwiatkowski, Benedetta Cencini, Adriana Szmidt-Jaworska, Krzysztof Jaworski","doi":"10.1007/s12298-025-01606-1","DOIUrl":"10.1007/s12298-025-01606-1","url":null,"abstract":"<p><p>The structural complexity of plant proteins, particularly receptor-like kinases, has garnered significant attention in recent research. This research identifies <i>Physcomitrium patens</i> ERECTA-like receptor 1 (PpERL1) as a new guanylate cyclase (GC) within the cytoplasmic kinase domain by examining its structural and functional properties. Comprehensive sequence alignment analyses reveal substantial variability among ERECTA-like proteins from mosses in contrast to vascular plants, while GC motifs display remarkable conservation, suggesting a critical functional relevance. In vitro tests validate the GC activity of recombinant PpERL1, with key residue substitutions at positions 1 and 14 leading to a decrease in GC activity. Notably, cGMP does not impact PpERL1's kinase activity, while inhibits its enzymatic function, contrasting with regulatory mechanisms observed in vascular plant GCs. Independent regulatory mechanisms are shown by calcium ions increasing GC activity without affecting kinase functioning. These results demonstrate an evolutionary divergence in the regulatory interactions between GC and kinase domains in mosses versus vascular plants, reflecting adaptive strategies unique to non-vascular plant lineages.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-025-01606-1.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":"31 5","pages":"813-822"},"PeriodicalIF":3.4,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12185792/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144497680","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-05-01Epub Date: 2025-06-05DOI: 10.1007/s12298-025-01602-5
Manisha Chumber, Shalini Jhanji
Daylength extension (DLE) has significant potential to enhance the growth and development of various crops through increased carbohydrate synthesis and metabolism. This study explored the impact of DLE on spike quality, corm production, sucrose metabolism and carbohydrate accumulation of Gladiolus. Plants were subjected to DLE of 2 and 4 h after 30, 40 and 50 days of sprouting. The 2 h of DLE after 50 days of sprouting markedly increased acid invertase, neutral invertase and sucrose synthase activities in leaves by 1.11, 1.88 and 3.53 times and in corms by 1.44, 1.83 and 1.84 times, respectively, compared to natural daylength (NDL). Carbohydrate accumulation improved, with most pronounced effects of DLE after 30 and 50 days of sprouting. The DLE of 2 h also led to early spike development. The DLE of 2 h after 50 days, enhanced spike length (11.54%), weight (14.25%), diameter (11.86%) and floret size (10.98%) compared to NDL. Corm production was significantly higher under 2 h of DLE after 50 days, as corm (97.59 g) and cormel weight per plant (6.33 g), corm diameter (52.82 mm) and number of corms (2.17) and cormels per plant (29.00) increased compared to NDL. Correlation and Principal Component Analysis revealed that improved spike quality and corm production was result of enhanced sucrose enzyme activity, increased carbohydrate accumulation and earlier spike development. Therefore, 2 h of DLE after 30 or 50 days of sprouting could be effective in enhancing corm production and spike quality. Thus, considering economic benefits, employing 2 h of DLE after 50 days of sprouting could be recommended.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-025-01602-5.
{"title":"Daylength extension: a strategy to enhance sucrose metabolism and carbohydrate accumulation for improving spike quality and corm production in Gladiolus (<i>Gladiolus hybridus</i> Hort.).","authors":"Manisha Chumber, Shalini Jhanji","doi":"10.1007/s12298-025-01602-5","DOIUrl":"10.1007/s12298-025-01602-5","url":null,"abstract":"<p><p>Daylength extension (DLE) has significant potential to enhance the growth and development of various crops through increased carbohydrate synthesis and metabolism. This study explored the impact of DLE on spike quality, corm production, sucrose metabolism and carbohydrate accumulation of Gladiolus. Plants were subjected to DLE of 2 and 4 h after 30, 40 and 50 days of sprouting. The 2 h of DLE after 50 days of sprouting markedly increased acid invertase, neutral invertase and sucrose synthase activities in leaves by 1.11, 1.88 and 3.53 times and in corms by 1.44, 1.83 and 1.84 times, respectively, compared to natural daylength (NDL). Carbohydrate accumulation improved, with most pronounced effects of DLE after 30 and 50 days of sprouting. The DLE of 2 h also led to early spike development. The DLE of 2 h after 50 days, enhanced spike length (11.54%), weight (14.25%), diameter (11.86%) and floret size (10.98%) compared to NDL. Corm production was significantly higher under 2 h of DLE after 50 days, as corm (97.59 g) and cormel weight per plant (6.33 g), corm diameter (52.82 mm) and number of corms (2.17) and cormels per plant (29.00) increased compared to NDL. Correlation and Principal Component Analysis revealed that improved spike quality and corm production was result of enhanced sucrose enzyme activity, increased carbohydrate accumulation and earlier spike development. Therefore, 2 h of DLE after 30 or 50 days of sprouting could be effective in enhancing corm production and spike quality. Thus, considering economic benefits, employing 2 h of DLE after 50 days of sprouting could be recommended.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-025-01602-5.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":"31 5","pages":"795-812"},"PeriodicalIF":3.4,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12185823/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144497674","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Okra enation leaf curl disease (OELCuD), caused by Okra enation leaf curl virus (OELCuV) and transmitted by whiteflies (Bemisia tabaci), significantly threatens okra cultivation in India. This study conducted a comprehensive survey (2020-2022) across seven Indian states, recording disease incidence ranging from 14.03% to 67.57%. Polymerase chain reaction (PCR) using coat protein gene-specific primers confirmed the presence of OELCuV in symptomatic plants, amplifying a ~ 750 bp fragment. Full-genome characterization of five isolates from different geographic regions using rolling circle amplification (RCA) revealed high genetic variability, with nucleotide identities ranging from 92.2% to 96.5% compared to existing OELCuV DNA-A sequences. Two novel strains were identified in Meerut (Uttar Pradesh) and Viluppuram (Tamil Nadu), meeting the International Committee on Taxonomy of Viruses (ICTV) species demarcation criteria. Phylogenetic and recombination analyses demonstrated that these strains form a unique cluster with recombinant features, particularly in the AC1 coding region, which is under purifying selection. The findings underscore the urgent need to monitor the genetic variability and spread of OELCuV to protect okra cultivation from evolving viral threats.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-025-01578-2.
{"title":"Study of genetic variability and emerging strains of <i>Okra enation leaf curl virus</i>: increasing risks to okra production in India.","authors":"Ankit Kumar, Jyoti Singh, Anupma Singh, Dharmendra Pratap","doi":"10.1007/s12298-025-01578-2","DOIUrl":"10.1007/s12298-025-01578-2","url":null,"abstract":"<p><p>Okra enation leaf curl disease (OELCuD), caused by <i>Okra enation leaf curl virus</i> (OELCuV) and transmitted by whiteflies (<i>Bemisia tabaci</i>), significantly threatens okra cultivation in India. This study conducted a comprehensive survey (2020-2022) across seven Indian states, recording disease incidence ranging from 14.03% to 67.57%. Polymerase chain reaction (PCR) using coat protein gene-specific primers confirmed the presence of OELCuV in symptomatic plants, amplifying a ~ 750 bp fragment. Full-genome characterization of five isolates from different geographic regions using rolling circle amplification (RCA) revealed high genetic variability, with nucleotide identities ranging from 92.2% to 96.5% compared to existing OELCuV DNA-A sequences. Two novel strains were identified in Meerut (Uttar Pradesh) and Viluppuram (Tamil Nadu), meeting the International Committee on Taxonomy of Viruses (ICTV) species demarcation criteria. Phylogenetic and recombination analyses demonstrated that these strains form a unique cluster with recombinant features, particularly in the AC1 coding region, which is under purifying selection. The findings underscore the urgent need to monitor the genetic variability and spread of OELCuV to protect okra cultivation from evolving viral threats.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-025-01578-2.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":"31 5","pages":"767-783"},"PeriodicalIF":3.4,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12185807/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144497626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-05-01Epub Date: 2025-06-09DOI: 10.1007/s12298-025-01607-0
Xiang Li, Chenchen Cao, Pablo Bolaños-Villegas, Ying Liu, Jiyu Wang, Qiong Li, Wenwen Mao, Panqiao Wang, Juan Hou, Lili Li, Jianbin Hu, Yonghua Li
Melon (Cucumis melo L.), an important cash fruit crop with high nutritional value, is cultivated worldwide. To promote the application of gene editing technology and accelerate functional analysis of genes in melon, we developed an efficient protocol for inducing the formation of hairy roots. Using melon cotyledon as explants and Agrobacterium rhizogenes (A. rhizogenes) K599 as the engineering bacterium, a large number of hairy roots could be induced within a month and the transformed hairy roots accounted for 68.61% of the total hairy roots. On average, 2.61 positive hairy roots were formed on each explant. By transforming hairy roots with a CRISPR/Cas9 gene editing construct, the availability of target sites can be assessed in planta in a brief time. The gene editing targets are preliminarily divided into three types: full editing, partial editing, and no editing, and the efficacy of target sites was further validated by stable transformation. Then, we found that the efficiency of gene editing was promoted by the number of sgRNA expression cassettes. Finally, we used this system to analyze the function of melon CmRHL1 in root hair development and found that melon root hair development was significantly inhibited by the mutation of this gene. In summary, the hairy root editing method established in this study may be used to quickly validate the activity of CRISPR/Cas9 constructs and characterize gene function during root development, serving as a complementary tool for heritable genome editing in melon.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-025-01607-0.
{"title":"Validation of CRISPR construct activity and gene function in melon via a hairy root transformation system.","authors":"Xiang Li, Chenchen Cao, Pablo Bolaños-Villegas, Ying Liu, Jiyu Wang, Qiong Li, Wenwen Mao, Panqiao Wang, Juan Hou, Lili Li, Jianbin Hu, Yonghua Li","doi":"10.1007/s12298-025-01607-0","DOIUrl":"10.1007/s12298-025-01607-0","url":null,"abstract":"<p><p>Melon (<i>Cucumis melo</i> L.), an important cash fruit crop with high nutritional value, is cultivated worldwide. To promote the application of gene editing technology and accelerate functional analysis of genes in melon, we developed an efficient protocol for inducing the formation of hairy roots. Using melon cotyledon as explants and <i>Agrobacterium rhizogenes</i> (<i>A. rhizogenes</i>) K599 as the engineering bacterium, a large number of hairy roots could be induced within a month and the transformed hairy roots accounted for 68.61% of the total hairy roots. On average, 2.61 positive hairy roots were formed on each explant. By transforming hairy roots with a CRISPR/Cas9 gene editing construct, the availability of target sites can be assessed <i>in planta</i> in a brief time. The gene editing targets are preliminarily divided into three types: full editing, partial editing, and no editing, and the efficacy of target sites was further validated by stable transformation. Then, we found that the efficiency of gene editing was promoted by the number of sgRNA expression cassettes. Finally, we used this system to analyze the function of melon <i>CmRHL1</i> in root hair development and found that melon root hair development was significantly inhibited by the mutation of this gene. In summary, the hairy root editing method established in this study may be used to quickly validate the activity of CRISPR/Cas9 constructs and characterize gene function during root development, serving as a complementary tool for heritable genome editing in melon.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-025-01607-0.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":"31 5","pages":"753-766"},"PeriodicalIF":3.4,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12185833/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144497627","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}