Pub Date : 2024-10-01Epub Date: 2024-09-24DOI: 10.1007/s12298-024-01512-y
Haibo Wu, Wanzhen Mo, Yanli Li, Lin Zhang, Yunpeng Cao
Fusarium wilt, caused by Fusarium oxysporum f. sp. fordiis in Vernicia fordii, manifests as severe symptoms that significantly reduce global tung oil yield. However, the molecular-mechanisms of the Vernicia-Fusarium interaction are yet to be fully elucidated. Here, we cloned VfLRR-RLK1 from tung tree roots, which contained 1134 bp, encoding 378 AA. To further analyze VfLRR-RLK1 function in resistance to Fusarium wilt, we obtained stable T4-generation transgenic Arabidopsis thaliana and tung tree VfLRR-RLK1 virus-induced gene silencing (VIGS) RNAi plants. A. thaliana plants overexpressing VfLRR-RLK1 exhibited more robust root development and markedly increased Fusarium wilt disease resistance. In response to Fusarium wilt stress, transgenic A. thaliana exhibited increased catalase (CAT) and superoxide dismutase (SOD) enzyme activities, while showing reduced O2- and hydrogen peroxide (H2O2) accumulation. The findings suggest that VfLRR-RLK1 may diminish plant reactive oxygen species (ROS) levels and foster root development by activating the ROS antioxidant scavenging system during plant Pattern Triggered Immunity responses, enhancing resistance to Fusarium wilt. The study on the function of VfLRR-RLK1 is crucial in breeding programs aimed at developing tung tree resistant to Fusarium wilt, and lays the groundwork for more effective disease management strategies and the cultivation of tung tree varieties with enhanced resistance to this disease.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-024-01512-y.
{"title":"<i>VfLRR-RLK1</i> benefiting resistance to <i>Fusarium oxysporum</i> reveals infection and defense mechanisms in tung tree.","authors":"Haibo Wu, Wanzhen Mo, Yanli Li, Lin Zhang, Yunpeng Cao","doi":"10.1007/s12298-024-01512-y","DOIUrl":"10.1007/s12298-024-01512-y","url":null,"abstract":"<p><p>Fusarium wilt, caused by <i>Fusarium oxysporum</i> f. sp. <i>fordiis</i> in <i>Vernicia fordii</i>, manifests as severe symptoms that significantly reduce global tung oil yield. However, the molecular-mechanisms of the <i>Vernicia</i>-Fusarium interaction are yet to be fully elucidated. Here, we cloned <i>VfLRR-RLK1</i> from tung tree roots, which contained 1134 bp, encoding 378 AA. To further analyze <i>VfLRR-RLK1</i> function in resistance to Fusarium wilt, we obtained stable T4-generation transgenic <i>Arabidopsis thaliana</i> and tung tree <i>VfLRR-RLK1</i> virus-induced gene silencing (VIGS) RNAi plants. <i>A. thaliana</i> plants overexpressing <i>VfLRR-RLK1</i> exhibited more robust root development and markedly increased Fusarium wilt disease resistance. In response to Fusarium wilt stress, transgenic <i>A. thaliana</i> exhibited increased catalase (CAT) and superoxide dismutase (SOD) enzyme activities, while showing reduced O<sub>2</sub> <sup>-</sup> and hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>) accumulation. The findings suggest that <i>VfLRR-RLK1</i> may diminish plant reactive oxygen species (ROS) levels and foster root development by activating the ROS antioxidant scavenging system during plant Pattern Triggered Immunity responses, enhancing resistance to Fusarium wilt. The study on the function of <i>VfLRR-RLK1</i> is crucial in breeding programs aimed at developing tung tree resistant to Fusarium wilt, and lays the groundwork for more effective disease management strategies and the cultivation of tung tree varieties with enhanced resistance to this disease.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-024-01512-y.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11534942/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142591318","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-01Epub Date: 2024-10-29DOI: 10.1007/s12298-024-01520-y
B Aravind, R J Shreeraksha, R Poornima, Divyabharathi Ravichandran, P U Krishnaraj, V P Chimmad, Kiran K Mirajkar, Basavaraj Bagewadi, Pasupuleti Janila, Manish K Pandey, Rajeev K Varshney, Spurthi N Nayak
The current climate change has a profound impact on agricultural production. Despite the unanimous efforts of several nations to prevent further increase in global temperatures, developing adaptive strategies by imparting heat tolerance in crop plants is essential to ensure global food security. This study demonstrates the impact of heat stress on the morphological, physiological and biochemical properties of different groundnut genotypes derived from a recombinant inbred line (RIL) population (JL 24 × 55-437). The plants were grown in controlled conditions and a high-temperature stress of 45 °C was gradually imposed by placing the plants in an environmental chamber during peak reproductive stage [25 days after sowing (DAS) to 60 DAS]. Heat tolerant genotypes had better biochemical machinery to withstand the heat stress-induced oxidative burst with higher activity of catalase and peroxidase. Also, the tolerant genotypes had lesser membrane damage as indicated by lower malondialdehyde levels. Greater expression of heat shock proteins (HSP17) transcripts alongside elevated levels of both enzymatic and non-enzymatic antioxidant activity was observed when exposed to high temperature, indicating their potential association with heat stress tolerance in groundnut.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-024-01520-y.
{"title":"Impact of heat stress on physiological characteristics and expression of heat shock proteins (HSPs) in groundnut (<i>Arachis hypogaea</i> L.).","authors":"B Aravind, R J Shreeraksha, R Poornima, Divyabharathi Ravichandran, P U Krishnaraj, V P Chimmad, Kiran K Mirajkar, Basavaraj Bagewadi, Pasupuleti Janila, Manish K Pandey, Rajeev K Varshney, Spurthi N Nayak","doi":"10.1007/s12298-024-01520-y","DOIUrl":"10.1007/s12298-024-01520-y","url":null,"abstract":"<p><p>The current climate change has a profound impact on agricultural production. Despite the unanimous efforts of several nations to prevent further increase in global temperatures, developing adaptive strategies by imparting heat tolerance in crop plants is essential to ensure global food security. This study demonstrates the impact of heat stress on the morphological, physiological and biochemical properties of different groundnut genotypes derived from a recombinant inbred line (RIL) population (JL 24 × 55-437). The plants were grown in controlled conditions and a high-temperature stress of 45 °C was gradually imposed by placing the plants in an environmental chamber during peak reproductive stage [25 days after sowing (DAS) to 60 DAS]. Heat tolerant genotypes had better biochemical machinery to withstand the heat stress-induced oxidative burst with higher activity of catalase and peroxidase. Also, the tolerant genotypes had lesser membrane damage as indicated by lower malondialdehyde levels. Greater expression of heat shock proteins (<i>HSP17</i>) transcripts alongside elevated levels of both enzymatic and non-enzymatic antioxidant activity was observed when exposed to high temperature, indicating their potential association with heat stress tolerance in groundnut.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-024-01520-y.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11535108/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142591377","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-01Epub Date: 2024-10-17DOI: 10.1007/s12298-024-01517-7
Elena Yu Garnik, Daria V Vilyanen, Anfisa A Vlasova, Vladislav I Tarasenko, Yuri M Konstantinov
Yellowing is the first visually observable sign of plant leaf senescence. We found that Arabidopsis double knockout mutant gdh1gdh2 for genes of NAD(H)-dependent glutamate dehydrogenase retains green color of the leaves (stay-green phenotype) during a dark-induced senescence, in contrast to wild-type plants, whose leaves turn yellow. When the gdh1gdh2 plants are exposed to the dark more than four days, they demonstrate slower chlorophyll degradation than in the wild-type plants under the same conditions, as well as dysregulation of chlorophyll breakdown genes encoding chlorophyll b reductase, Mg-dechelatase, pheophytinase and pheophorbide a oxygenase. The slowed degradation of chlorophyll b in gdh1gdh2 plants significantly alters the chlorophyll a/b ratio. Ion leakage in the mutant plants increases significantly from four to eight days in the darkness, correlating with their premature death during this period. The discovered facts suggest a functional connection between activity of NAD(H)-dependent glutamate dehydrogenase and dark-induced senescence progress in Arabidopsis.
黄化是植物叶片衰老的第一个直观迹象。我们发现,拟南芥 NAD(H)依赖型谷氨酸脱氢酶基因的双基因敲除突变体 gdh1gdh2 在黑暗诱导的衰老过程中叶片仍保持绿色(留绿表型),而野生型植株的叶片则会变黄。当 gdh1gdh2 植物暴露在黑暗中超过四天时,它们的叶绿素降解速度比相同条件下的野生型植物慢,叶绿素 b 还原酶、镁脱螯酶、叶绿素酶和叶绿素 a 加氧酶的叶绿素分解基因也出现失调。gdh1gdh2 植物叶绿素 b 的降解速度减慢,显著改变了叶绿素 a/b 的比例。突变体植物的离子泄漏在黑暗中4到8天明显增加,这与它们在此期间过早死亡有关。这些发现表明,拟南芥中依赖 NAD(H)的谷氨酸脱氢酶的活性与黑暗诱导的衰老进程之间存在功能性联系。
{"title":"Arabidopsis <i>GDH1</i> and <i>GDH2</i> genes double knock-out results in a stay-green phenotype during dark-induced senescence.","authors":"Elena Yu Garnik, Daria V Vilyanen, Anfisa A Vlasova, Vladislav I Tarasenko, Yuri M Konstantinov","doi":"10.1007/s12298-024-01517-7","DOIUrl":"10.1007/s12298-024-01517-7","url":null,"abstract":"<p><p>Yellowing is the first visually observable sign of plant leaf senescence. We found that Arabidopsis double knockout mutant <i>gdh1gdh2</i> for genes of NAD(H)-dependent glutamate dehydrogenase retains green color of the leaves (stay-green phenotype) during a dark-induced senescence, in contrast to wild-type plants, whose leaves turn yellow. When the <i>gdh1gdh2</i> plants are exposed to the dark more than four days, they demonstrate slower chlorophyll degradation than in the wild-type plants under the same conditions, as well as dysregulation of chlorophyll breakdown genes encoding chlorophyll <i>b</i> reductase, Mg-dechelatase, pheophytinase and pheophorbide <i>a</i> oxygenase. The slowed degradation of chlorophyll <i>b</i> in <i>gdh1gdh2</i> plants significantly alters the chlorophyll <i>a</i>/<i>b</i> ratio. Ion leakage in the mutant plants increases significantly from four to eight days in the darkness, correlating with their premature death during this period. The discovered facts suggest a functional connection between activity of NAD(H)-dependent glutamate dehydrogenase and dark-induced senescence progress in Arabidopsis.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11534964/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142591337","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-01Epub Date: 2024-10-15DOI: 10.1007/s12298-024-01511-z
Ting Yang, Jihu Li, Yongkai Mao, Han Wu, Mingjiang Lin, Lijuan Chen
Rhamnolipids (RLs) are bioactive compounds that have gained a lot of attention for their potential applications in agriculture. However, the exploration of RLs in passion fruit plants remains limited. This study aimed to investigate the role of RLs in passion fruit plants growth and defense responses. Firstly, the results demonstrated that RLs act as plant growth regulators, significantly enhancing the survival rate and root system development of passion fruit seedlings propagated by cutting. Further analyses suggested that RLs may enhance photosynthetic capacity and modulate the accumulation of indoleacetic acid (IAA) and cytokinin (CTK) in passion fruit cuttings, thereby promoting plant growth and development. Additionally, this study revealed that RLs effectively reduced susceptibility to viral pathogen telosma mosaic virus (TeMV) in passion fruit plants compared to distilled water-pretreated controls, resulting in alleviated disease symptoms. Significant up-regulation of antioxidative enzyme activities and reducing substances were observed in RL's-pretreated plants upon TeMV-inoculation compared to distilled water-pretreated ones. Moreover, RLs were found to promote other defense-related signaling pathways upon TeMV-inoculation in passion fruit plants, including salicylic acid (SA) accumulation and expression levels of defense-related genes such as pathogenesis-related gene (PR3), phenylalanine ammonia-lyase (PAL), transcription factors (TFs) WRKY and NAC. Collectively, these findings underscored the positive roles played by RLs both in promoting growth and eliciting defense responses within passion fruit plants. These results provided valuable insights for designing environment-friendly management strategies for cutting propagation as well as prevention and control measures against viral diseases in passion fruits.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-024-01511-z.
{"title":"The role of rhamnolipids in the growth and defense responses of passion fruit plants.","authors":"Ting Yang, Jihu Li, Yongkai Mao, Han Wu, Mingjiang Lin, Lijuan Chen","doi":"10.1007/s12298-024-01511-z","DOIUrl":"10.1007/s12298-024-01511-z","url":null,"abstract":"<p><p>Rhamnolipids (RLs) are bioactive compounds that have gained a lot of attention for their potential applications in agriculture. However, the exploration of RLs in passion fruit plants remains limited. This study aimed to investigate the role of RLs in passion fruit plants growth and defense responses. Firstly, the results demonstrated that RLs act as plant growth regulators, significantly enhancing the survival rate and root system development of passion fruit seedlings propagated by cutting. Further analyses suggested that RLs may enhance photosynthetic capacity and modulate the accumulation of indoleacetic acid (IAA) and cytokinin (CTK) in passion fruit cuttings, thereby promoting plant growth and development. Additionally, this study revealed that RLs effectively reduced susceptibility to viral pathogen telosma mosaic virus (TeMV) in passion fruit plants compared to distilled water-pretreated controls, resulting in alleviated disease symptoms. Significant up-regulation of antioxidative enzyme activities and reducing substances were observed in RL's-pretreated plants upon TeMV-inoculation compared to distilled water-pretreated ones. Moreover, RLs were found to promote other defense-related signaling pathways upon TeMV-inoculation in passion fruit plants, including salicylic acid (SA) accumulation and expression levels of defense-related genes such as pathogenesis-related gene (<i>PR3</i>), phenylalanine ammonia-lyase (<i>PAL</i>), transcription factors (TFs) <i>WRKY</i> and <i>NAC</i>. Collectively, these findings underscored the positive roles played by RLs both in promoting growth and eliciting defense responses within passion fruit plants. These results provided valuable insights for designing environment-friendly management strategies for cutting propagation as well as prevention and control measures against viral diseases in passion fruits.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-024-01511-z.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11534940/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142591415","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Chinese cabbage (Brassica rapa ssp. pekinensis) is a globally cultivated and consumed leafy vegetable due to its abundant plant secondary metabolites and antioxidant compounds, including flavonoids, ascorbic acids, glucosinolates, and vitamins, which have been reported to confer health-promoting effects. Glucosinolates components in leaves of Chinese cabbage plantlets under different concentrations of sodium selenite (0, 30, and 50 μmol/L) were analyzed. Seven glucosinolates were identified and quantified using UHPLC-QTOF-MS. Finally, treatments with 30 and 50 μmol/L Na2SeO3 solution significantly increased the levels of total selenium content as well as total phenols, flavonoids, anthocyanins, and DPPH free radical scavenging ability in Chinese cabbage seedlings. Our results revealed that 30 μmol/L Na2SeO3 effectively enhanced aliphatic glucosinolate levels and total glucosinolate content while causing a significant reduction in indole glucosinolates. Furthermore, downregulation was observed for BrCYP79F1, BrBCAT4, and BrMAM1 genes associated with aliphatic glucosinolate synthesis. Conversely, BrMYB28 and BrCYP83A1 genes exhibited significant upregulation. Thus, the positive influence of Na2SeO3 on glucosinolate biosynthesis in Chinese cabbage can be attributed to the upregulation of key genes related to this process.
{"title":"Effect of sodium selenite on the synthesis of glucosinolates and antioxidant capacity in Chinese cabbage (<i>Brassica rapa</i> L.ssp.<i>pekinensis</i>).","authors":"Yafang Luo, Shuang Zhao, Huan Wang, Huixia Bai, Qi Hu, Linlin Zhao, Tianyi Ma, Zhenyu Fan, Yushu Wang","doi":"10.1007/s12298-024-01513-x","DOIUrl":"10.1007/s12298-024-01513-x","url":null,"abstract":"<p><p>Chinese cabbage (<i>Brassica rapa</i> ssp. <i>pekinensis</i>) is a globally cultivated and consumed leafy vegetable due to its abundant plant secondary metabolites and antioxidant compounds, including flavonoids, ascorbic acids, glucosinolates, and vitamins, which have been reported to confer health-promoting effects. Glucosinolates components in leaves of Chinese cabbage plantlets under different concentrations of sodium selenite (0, 30, and 50 μmol/L) were analyzed. Seven glucosinolates were identified and quantified using UHPLC-QTOF-MS. Finally, treatments with 30 and 50 μmol/L Na<sub>2</sub>SeO<sub>3</sub> solution significantly increased the levels of total selenium content as well as total phenols, flavonoids, anthocyanins, and DPPH free radical scavenging ability in Chinese cabbage seedlings. Our results revealed that 30 μmol/L Na<sub>2</sub>SeO<sub>3</sub> effectively enhanced aliphatic glucosinolate levels and total glucosinolate content while causing a significant reduction in indole glucosinolates. Furthermore, downregulation was observed for <i>BrCYP79F1</i>, <i>BrBCAT4</i>, and <i>BrMAM1</i> genes associated with aliphatic glucosinolate synthesis. Conversely, <i>BrMYB28</i> and <i>BrCYP83A1</i> genes exhibited significant upregulation. Thus, the positive influence of Na<sub>2</sub>SeO<sub>3</sub> on glucosinolate biosynthesis in Chinese cabbage can be attributed to the upregulation of key genes related to this process.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11534961/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142591345","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pyricularia (syn. Magnaporthe) oryzae is responsible for the blast disease in rice resulting in a greater extent of yield loss. However, some of the cultivars of rice have the ability to survive this devastating infection due to the presence of R (resistance) genes. Therefore, genome wide association study (GWAS) was undertaken using a panel of 400 rice landraces (ARC panel) and a set of filtered 38,723 single nucleotide polymorphisms (SNPs). The highest SNPs were mapped to chromosome 1 with a number of 4332 SNPs and lowest (2252) in chromosome 12. The ARC panel was evaluated phenotypically which revealed that 6% of the selected cultivars has resistance to rice blast disease with SES score of 1. The majority of the resistant cultivars belong to the group Asra of the panel. The population structure analysis was executed wherein three genetic subpopulations were identified namely RC1, RC2, RC3 and an admixture population constituting 48 accessions. Further, GWAS detected 15 significant association signal with P value in the range of 1.03E-05 to 1.03E-04, effect ranged from - 1.18 to 1.06, phenotypic variance explained was from 0 to 7.14%, R2 of 0.047 to 0.058, and minor allele frequency of 0.107 to 0.444. Eleven (Os01g39980, Os01g56130, Os01g67100, Os01g67110, Os03g41030, Os04g33310, Os07g42104, Os09g06464, Os09g08920, Os09g38800, Os12g37680) out of these 15 significant associations were identified as the candidate loci for the blast resistance in rice that will serve as an important genetic resistance source to be introgressed into an elite rice line in future breeding programs for deciphering blast resistance in rice. The GWAS study presented in this article helped to uncover significant gene regions which encode proteins to resist blast infection in rice plant. This is the first report on the GWAS analysis for blast resistance in unique landraces of rice from Northeast India employing single nucleotide polymorphism.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-024-01518-6.
{"title":"Identification of significant SNPs and candidate loci for blast disease resistance via GWAS and population structure analysis in ARC panel of <i>Oryza sativa</i>.","authors":"Parinda Barua, Munmi Phukon, Sunita Munda, Vipin Ranga, R Sruthi, Jyoti Lekha Borah, Janardan Das, Pompi Dutta, Ashok Bhattacharyya, Mahendra Kumar Modi, Sanjay Kumar Chetia","doi":"10.1007/s12298-024-01518-6","DOIUrl":"10.1007/s12298-024-01518-6","url":null,"abstract":"<p><p><i>Pyricularia</i> (syn. <i>Magnaporthe</i>) <i>oryzae</i> is responsible for the blast disease in rice resulting in a greater extent of yield loss. However, some of the cultivars of rice have the ability to survive this devastating infection due to the presence of <i>R</i> (resistance) genes. Therefore, genome wide association study (GWAS) was undertaken using a panel of 400 rice landraces (ARC panel) and a set of filtered 38,723 single nucleotide polymorphisms (SNPs). The highest SNPs were mapped to chromosome 1 with a number of 4332 SNPs and lowest (2252) in chromosome 12. The ARC panel was evaluated phenotypically which revealed that 6% of the selected cultivars has resistance to rice blast disease with SES score of 1. The majority of the resistant cultivars belong to the group Asra of the panel. The population structure analysis was executed wherein three genetic subpopulations were identified namely RC1, RC2, RC3 and an admixture population constituting 48 accessions. Further, GWAS detected 15 significant association signal with <i>P</i> value in the range of 1.03E-05 to 1.03E-04, effect ranged from - 1.18 to 1.06, phenotypic variance explained was from 0 to 7.14%, R<sup>2</sup> of 0.047 to 0.058, and minor allele frequency of 0.107 to 0.444. Eleven (Os01g39980, Os01g56130, Os01g67100, Os01g67110, Os03g41030, Os04g33310, Os07g42104, Os09g06464, Os09g08920, Os09g38800, Os12g37680) out of these 15 significant associations were identified as the candidate loci for the blast resistance in rice that will serve as an important genetic resistance source to be introgressed into an elite rice line in future breeding programs for deciphering blast resistance in rice. The GWAS study presented in this article helped to uncover significant gene regions which encode proteins to resist blast infection in rice plant. This is the first report on the GWAS analysis for blast resistance in unique landraces of rice from Northeast India employing single nucleotide polymorphism.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-024-01518-6.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11535146/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142591355","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Small chemical molecules are attractive agents for improving the plant processes associated with plant growth and stress tolerance. Recent advances in chemical biology and structure-assisted drug discovery approaches have opened up new avenues in plant biology to discover new drug-like molecules to improve plant processes for sustained food production. Several compounds targeting phytohormone biosynthesis or signalling cascades were designed to alter plant physiological mechanisms. Altering Abscisic acid synthesis and its signalling process can improve drought tolerance, and the processes targeted are reversible. Molecules targeting cytokinin, Auxin, and gibberellic acid regulate plant physiological processes and can potentially improve plant growth, biomass and productivity. The potential of molecules may be exploited as agrochemicals to enhance agricultural productivity. The discovery of small molecules provides new avenues to improve crop production in changing climatic conditions and the nutritional quality of foods. We present the rational combinations of small molecules with inhibitory and co-stimulatory effects and discuss future opportunities in this field.
{"title":"Small chemical molecules regulating the phytohormone signalling alter the plant's physiological processes to improve stress adaptation, growth and productivity.","authors":"Shobhna Yadav, Vijayaraghavareddy Preethi, Sujitha Dadi, Chandra Shekhar Seth, Keshavareddy G, Babitha Kodaikallu Chandrashekar, Ramu Shettykothanur Vemanna","doi":"10.1007/s12298-024-01514-w","DOIUrl":"10.1007/s12298-024-01514-w","url":null,"abstract":"<p><p>Small chemical molecules are attractive agents for improving the plant processes associated with plant growth and stress tolerance. Recent advances in chemical biology and structure-assisted drug discovery approaches have opened up new avenues in plant biology to discover new drug-like molecules to improve plant processes for sustained food production. Several compounds targeting phytohormone biosynthesis or signalling cascades were designed to alter plant physiological mechanisms. Altering Abscisic acid synthesis and its signalling process can improve drought tolerance, and the processes targeted are reversible. Molecules targeting cytokinin, Auxin, and gibberellic acid regulate plant physiological processes and can potentially improve plant growth, biomass and productivity. The potential of molecules may be exploited as agrochemicals to enhance agricultural productivity. The discovery of small molecules provides new avenues to improve crop production in changing climatic conditions and the nutritional quality of foods. We present the rational combinations of small molecules with inhibitory and co-stimulatory effects and discuss future opportunities in this field.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11535105/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142591397","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-10-01Epub Date: 2024-10-23DOI: 10.1007/s12298-024-01519-5
Humaira Yasmeen, Rizwan Rasheed, Muhammad Arslan Ashraf, Sadia Zafar, Shafaqat Ali
Understanding how maize responds to temperature stress is crucial for improving its resilience and productivity under changing climate conditions. Previous studies have shown that exogenous allantoin (ALA) regulates various physiological processes in plants under cadmium and salinity stress. The existing body of literature provides limited insight into the specific mechanisms that govern the impact of ALA on the physiological and biochemical responses of maize plants under heat stress. This study aims to investigate the role of ALA in regulating oxidative defense, secondary metabolism, and ion homeostasis in maize under heat stress, with the ultimate goal of improving maize resilience and productivity. The current investigation displayed visible depression in growth, chlorophyll content, and nutrient uptake in maize cultivars (tolerant cv. Pearl and sensitive cv. Pak-afgoi) under heat stress. Heat stress raised MDA and H2O2 levels in plants, indicating hampered ROS detoxification that might have impeded nutrient acquisition in plants more profoundly in heat-sensitive cv. Pak afgoi. ALA (150 and 300 mg L-1) promoted plant heat stress tolerance. ALA (300 mg L-1) increased enzymatic antioxidant activities and antioxidant molecule buildup, which diminished cell ROS levels. ALA increased osmolyte accumulation, raised chlorophyll and nutrient uptake, and mitigated oxidative damage in maize under heat stress. After 72 h of recovery from heat stress, ALA significantly enhanced biomass, photosynthetic pigments, ROS detoxification, and nutrient uptake while minimizing oxidative damage, aiding rapid plant recovery from heat stress.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-024-01519-5.
了解玉米如何应对温度胁迫对于提高其在不断变化的气候条件下的抗逆性和生产力至关重要。以往的研究表明,外源尿囊素(ALA)能调节植物在镉和盐度胁迫下的各种生理过程。现有文献对 ALA 对玉米植物在热胁迫下的生理和生化反应影响的具体机制了解有限。本研究旨在探讨 ALA 在热胁迫下调节玉米氧化防御、次生代谢和离子平衡的作用,最终目的是提高玉米的抗逆性和生产力。目前的研究显示,在热胁迫下,玉米栽培品种(耐热品种 Pearl 和敏感品种 Pak-afgoi)的生长、叶绿素含量和养分吸收均受到明显抑制。热胁迫使植物体内的 MDA 和 H2O2 水平升高,表明 ROS 解毒功能受阻,这可能会更严重地阻碍植物对养分的吸收。Pak afgoi。ALA(150 毫克/升和 300 毫克/升)促进了植物对热胁迫的耐受性。ALA(300 毫克/升)增加了酶的抗氧化活性和抗氧化分子的积累,从而降低了细胞的 ROS 水平。ALA 增加了渗透溶质的积累,提高了叶绿素和养分的吸收,减轻了玉米在热胁迫下的氧化损伤。从热胁迫中恢复 72 小时后,ALA 显著提高了生物量、光合色素、ROS 解毒能力和养分吸收能力,同时将氧化损伤降至最低,帮助植物从热胁迫中快速恢复:在线版本包含补充材料,可查阅 10.1007/s12298-024-01519-5。
{"title":"Allantoin regulated oxidative defense, secondary metabolism and ions homeostasis in maize (<i>Zea mays</i> L.) under heat stress.","authors":"Humaira Yasmeen, Rizwan Rasheed, Muhammad Arslan Ashraf, Sadia Zafar, Shafaqat Ali","doi":"10.1007/s12298-024-01519-5","DOIUrl":"10.1007/s12298-024-01519-5","url":null,"abstract":"<p><p>Understanding how maize responds to temperature stress is crucial for improving its resilience and productivity under changing climate conditions. Previous studies have shown that exogenous allantoin (ALA) regulates various physiological processes in plants under cadmium and salinity stress. The existing body of literature provides limited insight into the specific mechanisms that govern the impact of ALA on the physiological and biochemical responses of maize plants under heat stress. This study aims to investigate the role of ALA in regulating oxidative defense, secondary metabolism, and ion homeostasis in maize under heat stress, with the ultimate goal of improving maize resilience and productivity. The current investigation displayed visible depression in growth, chlorophyll content, and nutrient uptake in maize cultivars (tolerant cv. Pearl and sensitive cv. Pak-afgoi) under heat stress. Heat stress raised MDA and H<sub>2</sub>O<sub>2</sub> levels in plants, indicating hampered ROS detoxification that might have impeded nutrient acquisition in plants more profoundly in heat-sensitive cv. Pak afgoi. ALA (150 and 300 mg L<sup>-1</sup>) promoted plant heat stress tolerance. ALA (300 mg L<sup>-1</sup>) increased enzymatic antioxidant activities and antioxidant molecule buildup, which diminished cell ROS levels. ALA increased osmolyte accumulation, raised chlorophyll and nutrient uptake, and mitigated oxidative damage in maize under heat stress. After 72 h of recovery from heat stress, ALA significantly enhanced biomass, photosynthetic pigments, ROS detoxification, and nutrient uptake while minimizing oxidative damage, aiding rapid plant recovery from heat stress.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-024-01519-5.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11534965/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142591331","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
This study explores the Laccase gene (AaLac) family along with AaLac1 expression in hairy roots of A. annua. 42 AaLacs were identified by detecting three conserved domains: Cu-oxidase, Cu oxidase-2, and Cu oxidase-3. The physicochemical properties show that AaLacs are proteins with 541-1075 amino acids. These proteins are stable, with an instability index less than 40. Phylogenetic and motif studies have shown structural variants in AaLacs, suggesting functional divergence. 22 AaLac cis-regulatory elements were selected for their roles in drought stress, metabolic modulations, defense, and stress responses. A comparison of AtLac and AaLac proteins showed that 11 AtLacs mitigates stress reactions. In silico expression, analysis of 11 AtLacs showed that AtLac84 may function under osmotic stress. Thus, the Homolog AaLac1 was selected by expression profiling. The real-time PCR results showed that AaLac1 enhances osmotic stress tolerance in shoot and root samples. It was also used to analyze AaLac1, ADS, and CYP71AV1 gene expression in hairy roots via induction. The transformed hairy roots exhibited a greater capacity for PEG-induced osmotic stress tolerance in contrast to the untransformed roots. The gene expression analysis also depicted a significant increment in expression of AaLac1, ADS, and CYP71AV1 genes to 3.8, 6.9, and 3.1 folds respectively. The transformed hairy roots exhibited a significant increase of 2.2 and 1.4 fold in flavonoid and phenolic content respectively. Also, lignin content and artemisinin content increased by 7.05 folds and 95.6% with respect to the control. Thus, transformed hairy roots of A. annua under PEG-induced osmotic stress demonstrate the involvement of the AaLac1 gene in stress responses, lignin biosynthesis, and secondary metabolism production.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-024-01516-8.
{"title":"Heterologous expression of <i>AaLac1</i> gene in hairy roots and its role in secondary metabolism under PEG-induced osmotic stress condition in <i>Artemisia annua</i> L.","authors":"Sabitri Kumari, Nidhi Rai, Sneha Singh, Pajeb Saha, Mansi Singh Bisen, Shashi Pandey-Rai","doi":"10.1007/s12298-024-01516-8","DOIUrl":"10.1007/s12298-024-01516-8","url":null,"abstract":"<p><p>This study explores the <i>Laccase</i> gene (<i>AaLac</i>) family along with <i>AaLac1</i> expression in hairy roots of <i>A. annua</i>. 42 <i>AaLacs</i> were identified by detecting three conserved domains: Cu-oxidase, Cu oxidase-2, and Cu oxidase-3. The physicochemical properties show that AaLacs are proteins with 541-1075 amino acids. These proteins are stable, with an instability index less than 40. Phylogenetic and motif studies have shown structural variants in <i>AaLacs</i>, suggesting functional divergence. 22 <i>AaLac cis</i>-regulatory elements were selected for their roles in drought stress, metabolic modulations, defense, and stress responses. A comparison of AtLac and AaLac proteins showed that 11 <i>AtLacs</i> mitigates stress reactions. In silico expression, analysis of 11 <i>AtLacs</i> showed that <i>AtLac84</i> may function under osmotic stress. Thus, the Homolog <i>AaLac1</i> was selected by expression profiling. The real-time PCR results showed that <i>AaLac1</i> enhances osmotic stress tolerance in shoot and root samples. It was also used to analyze <i>AaLac1</i>, <i>ADS,</i> and <i>CYP71AV1</i> gene expression in hairy roots via induction. The transformed hairy roots exhibited a greater capacity for PEG-induced osmotic stress tolerance in contrast to the untransformed roots. The gene expression analysis also depicted a significant increment in expression of <i>AaLac1</i>, <i>ADS,</i> and <i>CYP71AV1</i> genes to 3.8, 6.9, and 3.1 folds respectively. The transformed hairy roots exhibited a significant increase of 2.2 and 1.4 fold in flavonoid and phenolic content respectively. Also, lignin content and artemisinin content increased by 7.05 folds and 95.6% with respect to the control. Thus, transformed hairy roots of <i>A. annua</i> under PEG-induced osmotic stress demonstrate the involvement of the <i>AaLac1</i> gene in stress responses, lignin biosynthesis, and secondary metabolism production.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-024-01516-8.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11535012/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142591352","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
High salinity is an abiotic stress that limits crop production. Kenaf (Hibiscus cannabinus L.) is an annual fiber crop of the genus Hibiscus in the family Malvaceae with a certain tolerance to salt stress. Seed priming has been shown to ameliorate the adverse effects of salt stress on plants. However, the salt resistance mechanism in kenaf seeds treated with priming agents is not fully understood. In this study, we used four priming agents (H2O, PEG, ABA, KNO3) in different concentrations to treat kenaf seeds, and subjected the induced kenaf seedlings to salt stress (150 mM NaCl) to measure their agronomic traits and physiological and biochemical indicators. Our results indicate that the optimal priming concentration for PEG was 10%, 0.5 μM for ABA, and 0.5% for KNO3. Under these treatment concentrations, the germination rate of kenaf was significantly increased, and the fresh weight was also increased by 35.1%, 33.39%, 20.78% and 15.3%, respectively. Furthermore, the use of priming agents can alleviate the adverse effects of salt stress to a certain extent, significantly increase the agronomic indicators such as plant height, stem thickness, and leaf area of kenaf, enhance the ability of plants to perform photosynthesis, further improve the activity of antioxidant enzymes and increase the content of osmotic material, and reduce the accumulation of cell H2O2, O2- and MDA. Meanwhile, seed priming can also enhance the expression of HcSOS1, HcNHX, HcHKT, HcCBL, HcCIPK, HcPD and HcNCED involved in the salt stress pathway. These results warrant that seed priming can reduce the adverse effects of salt stress on kenaf.
Supplementary information: The online version contains supplementary material available at 10.1007/s12298-024-01521-x.
{"title":"Seed priming using different agents can alleviate salt stress in kenaf (<i>Hibiscus cannabinus</i> L.) by activating antioxidant system and related genes expression.","authors":"Renxue Li, Dengjie Luo, Muzammal Rehman, Xin Li, Caijin Wang, Shan Cao, Guofeng Xu, Meng Wang, Canni Chen, Jingzhi Nie, Ru Li, Tao Chen, Peng Chen","doi":"10.1007/s12298-024-01521-x","DOIUrl":"10.1007/s12298-024-01521-x","url":null,"abstract":"<p><p>High salinity is an abiotic stress that limits crop production. Kenaf (<i>Hibiscus cannabinus</i> L.) is an annual fiber crop of the genus <i>Hibiscus</i> in the family <i>Malvaceae</i> with a certain tolerance to salt stress. Seed priming has been shown to ameliorate the adverse effects of salt stress on plants. However, the salt resistance mechanism in kenaf seeds treated with priming agents is not fully understood. In this study, we used four priming agents (H<sub>2</sub>O, PEG, ABA, KNO<sub>3</sub>) in different concentrations to treat kenaf seeds, and subjected the induced kenaf seedlings to salt stress (150 mM NaCl) to measure their agronomic traits and physiological and biochemical indicators. Our results indicate that the optimal priming concentration for PEG was 10%, 0.5 μM for ABA, and 0.5% for KNO<sub>3</sub>. Under these treatment concentrations, the germination rate of kenaf was significantly increased, and the fresh weight was also increased by 35.1%, 33.39%, 20.78% and 15.3%, respectively. Furthermore, the use of priming agents can alleviate the adverse effects of salt stress to a certain extent, significantly increase the agronomic indicators such as plant height, stem thickness, and leaf area of kenaf, enhance the ability of plants to perform photosynthesis, further improve the activity of antioxidant enzymes and increase the content of osmotic material, and reduce the accumulation of cell H<sub>2</sub>O<sub>2</sub>, O<sub>2</sub> <sup>-</sup> and MDA. Meanwhile, seed priming can also enhance the expression of <i>HcSOS1, HcNHX, HcHKT, HcCBL, HcCIPK, HcPD</i> and <i>HcNCED</i> involved in the salt stress pathway. These results warrant that seed priming can reduce the adverse effects of salt stress on kenaf.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s12298-024-01521-x.</p>","PeriodicalId":20148,"journal":{"name":"Physiology and Molecular Biology of Plants","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11534967/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142591395","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}