Pub Date : 2024-02-09DOI: 10.1007/s12600-024-01136-8
Daniel C. Huston, Manda Khudhir, John Lewis, Sarah Collins, Akshita Jain, Mike Hodda
A species of Heterodera has been known to parasitise cereals in Australia since the 1930s. It caused significant yield losses across Australia’s cereal growing regions until resistance breeding largely brought it under control, although it still occurs occasionally, especially in South and Western Australia. Australian cereal cyst nematode has long been considered to represent Heterodera avenae. However, in 2002 the name Heterodera australis was proposed for Australian cereal cyst nematode, as it could be distinguished from all non-Australian populations of H. avenae via biochemical and molecular methods. This new species proposal came with speculation that both H. avenae and H. australis might occur in Australia, and that H. australis might represent a native species. The name H. australis has generally not been accepted by Australian scientists, nor the notion that it is native. There remains some uncertainty as to the validity of H. australis and whether more than one species of cereal cyst nematode occur in Australia. Using a molecular barcoding approach (COI, 18S, ITS, 28S) we examined the species composition of cyst nematodes present in soil samples collected between 1989–2023 from Australian cereal growing regions. We find only one species of Heterodera parasitising cereals and, based on phylogenetic analyses, accept the validity of H. australis as the name best representative of this species. We also argue that, based on presently available evidence, H. australis is not native and was most likely introduced into Australia from Asia in the 1850s, rather than from Europe as has been generally assumed.
自 20 世纪 30 年代起,一种 Heterodera 就开始寄生在澳大利亚的谷物上。它给澳大利亚的谷物种植区造成了巨大的产量损失,直到抗性育种在很大程度上控制了它,尽管它仍偶尔出现,尤其是在南澳大利亚州和西澳大利亚州。长期以来,澳大利亚谷物孢囊线虫一直被认为是 Heterodera avenae 的代表。然而,2002 年,澳大利亚谷粒胞囊线虫被命名为 Heterodera australis,因为通过生化和分子方法,它可以与所有非澳大利亚种群的 H. avenae 区分开来。在提出这一新种的同时,人们还推测枳壳线虫和澳大利亚枳壳线虫都可能出现在澳大利亚,而且澳大利亚枳壳线虫可能是一个本地物种。澳大利亚科学家普遍不接受 H. australis 这个名称,也不接受它是本地物种的说法。关于 H. australis 的有效性以及澳大利亚是否存在不止一种谷物孢囊线虫,仍然存在一些不确定性。利用分子条形码方法(COI、18S、ITS、28S),我们研究了 1989-2023 年间从澳大利亚谷物种植区采集的土壤样本中存在的胞囊线虫的物种组成。我们发现寄生于谷物中的 Heterodera 只有一种,根据系统发生学分析,我们认为 H. australis 最能代表这一物种。我们还认为,根据目前掌握的证据,H. australis 并非原产于澳大利亚,很可能是在 19 世纪 50 年代从亚洲引入澳大利亚的,而不是人们普遍认为的从欧洲引入的。
{"title":"DNA barcoding of Australian cereal cyst nematode populations with comments on likely origin and taxonomy (Tylenchoidea: Heterodera)","authors":"Daniel C. Huston, Manda Khudhir, John Lewis, Sarah Collins, Akshita Jain, Mike Hodda","doi":"10.1007/s12600-024-01136-8","DOIUrl":"https://doi.org/10.1007/s12600-024-01136-8","url":null,"abstract":"<p>A species of <i>Heterodera</i> has been known to parasitise cereals in Australia since the 1930s. It caused significant yield losses across Australia’s cereal growing regions until resistance breeding largely brought it under control, although it still occurs occasionally, especially in South and Western Australia. Australian cereal cyst nematode has long been considered to represent <i>Heterodera avenae</i>. However, in 2002 the name <i>Heterodera australis</i> was proposed for Australian cereal cyst nematode, as it could be distinguished from all non-Australian populations of <i>H</i>. <i>avenae</i> via biochemical and molecular methods. This new species proposal came with speculation that both <i>H</i>. <i>avenae</i> and <i>H</i>. <i>australis</i> might occur in Australia, and that <i>H</i>. <i>australis</i> might represent a native species. The name <i>H</i>. <i>australis</i> has generally not been accepted by Australian scientists, nor the notion that it is native. There remains some uncertainty as to the validity of <i>H</i>. <i>australis</i> and whether more than one species of cereal cyst nematode occur in Australia. Using a molecular barcoding approach (COI, 18S, ITS, 28S) we examined the species composition of cyst nematodes present in soil samples collected between 1989–2023 from Australian cereal growing regions. We find only one species of <i>Heterodera</i> parasitising cereals and, based on phylogenetic analyses, accept the validity of <i>H</i>. <i>australis</i> as the name best representative of this species. We also argue that, based on presently available evidence, <i>H</i>. <i>australis</i> is not native and was most likely introduced into Australia from Asia in the 1850s, rather than from Europe as has been generally assumed.</p>","PeriodicalId":20220,"journal":{"name":"Phytoparasitica","volume":"19 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139770826","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-25DOI: 10.1007/s12600-024-01122-0
Izaías Araújo de Oliveira, Luciane de Nazaré Almeida dos Reis, Flávia Milene Barros Nery, Niday Alline Nunes Fernandes, Vinícius Peres Machado Reis Gonçalves, Maria R. Rojas, Robert L. Gilbertson, Ailton Reis, Leonardo Silva Boiteux, Maria Esther de Noronha Fonseca-Boiteux, Rita de Cássia Pereira-Carvalho
Foliar samples were collected from the tomato (Solanum lycopersicum) cultivar ‘IPA-6’ exhibiting begomovirus-like symptoms (apical leaf curling and chlorosis) in Iranduba (Brazilian Amazon). PCR tests with degenerate primers targeting DNA–A and DNA–B components of a sample designated as AM–035 were positive for both genomic regions. Full-length cognate DNA–A and DNA–B components of AM–035 were cloned and sequenced via Sanger dideoxy termination reaction. The complete sequence of the DNA–A component (MK878452) comprised 2,630 nucleotides (organized in five open reading frames – ORFs), and the DNA–B component (MK878451) displayed 2,593 nucleotides (two ORFs). The highest identities ranged from 90 to 92% with tomato chlorotic mottle Guyane virus (ToCMoGV) isolates from French Guiana, indicating a highly divergent Brazilian strain of this virus. The present work reinforces the scenario of the high diversity of tomato-infecting begomoviruses in Brazil. Further studies are needed to determine the distribution and prevalence of ToCMoGV across tomato-producing areas in the Brazilian Amazon River Basin.
{"title":"Genomic characterization of a highly divergent tomato chlorotic mottle Guyane virus strain in the Brazilian Amazon River Basin","authors":"Izaías Araújo de Oliveira, Luciane de Nazaré Almeida dos Reis, Flávia Milene Barros Nery, Niday Alline Nunes Fernandes, Vinícius Peres Machado Reis Gonçalves, Maria R. Rojas, Robert L. Gilbertson, Ailton Reis, Leonardo Silva Boiteux, Maria Esther de Noronha Fonseca-Boiteux, Rita de Cássia Pereira-Carvalho","doi":"10.1007/s12600-024-01122-0","DOIUrl":"https://doi.org/10.1007/s12600-024-01122-0","url":null,"abstract":"<p>Foliar samples were collected from the tomato (<i>Solanum lycopersicum</i>) cultivar ‘IPA-6’ exhibiting begomovirus-like symptoms (apical leaf curling and chlorosis) in Iranduba (Brazilian Amazon). PCR tests with degenerate primers targeting DNA–A and DNA–B components of a sample designated as AM–035 were positive for both genomic regions. Full-length cognate DNA–A and DNA–B components of AM–035 were cloned and sequenced via Sanger dideoxy termination reaction. The complete sequence of the DNA–A component (MK878452) comprised 2,630 nucleotides (organized in five open reading frames – ORFs), and the DNA–B component (MK878451) displayed 2,593 nucleotides (two ORFs). The highest identities ranged from 90 to 92% with tomato chlorotic mottle Guyane virus (ToCMoGV) isolates from French Guiana, indicating a highly divergent Brazilian strain of this virus. The present work reinforces the scenario of the high diversity of tomato-infecting begomoviruses in Brazil. Further studies are needed to determine the distribution and prevalence of ToCMoGV across tomato-producing areas in the Brazilian Amazon River Basin.</p>","PeriodicalId":20220,"journal":{"name":"Phytoparasitica","volume":"1 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-01-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139554202","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-24DOI: 10.1007/s12600-024-01126-w
Abstract
During the last 15 years in Serbia, there has been an invasion of H. annuus across the country. Plants were initially limited to non-cultivated areas near arable fields, while in recent years the species has started to occur and establish populations in crop fields, especially into wide-row crops. We tested eight herbicides in two greenhouse experiments: 1) a dose-response study; 2) an efficacy study with reduced herbicide rates adding an adjuvant. The tested herbicides showed satisfactory weed control, where all estimated effective doses 90 (ED90) were lower than the recommended field rate for each herbicide, except for dicamba. The addition of non-ionic surfactants significantly increased the efficacy of glyphosate, mesotrione, rimsulfuron, and foramsulfuron. Whereas, there was no clear advantage to adding an adjuvant to bentazone and tembotrione, as the H. annuus population was already very sensitive (plants died in 1/8 of recommended rate in a dose-response study). All tested herbicides, except dicamba, can be used for satisfactory H. annuus control in maize, while glyphosate can be used for control of the species in non-agricultural lands.
{"title":"A post-emergence herbicide program for weedy sunflower (Helianthus annuus L.) control in maize","authors":"","doi":"10.1007/s12600-024-01126-w","DOIUrl":"https://doi.org/10.1007/s12600-024-01126-w","url":null,"abstract":"<h3>Abstract</h3> <p>During the last 15 years in Serbia, there has been an invasion of <em>H. annuus</em> across the country. Plants were initially limited to non-cultivated areas near arable fields, while in recent years the species has started to occur and establish populations in crop fields, especially into wide-row crops. We tested eight herbicides in two greenhouse experiments: 1) a dose-response study; 2) an efficacy study with reduced herbicide rates adding an adjuvant. The tested herbicides showed satisfactory weed control, where all estimated effective doses 90 (ED<sub>90</sub>) were lower than the recommended field rate for each herbicide, except for dicamba. The addition of non-ionic surfactants significantly increased the efficacy of glyphosate, mesotrione, rimsulfuron, and foramsulfuron. Whereas, there was no clear advantage to adding an adjuvant to bentazone and tembotrione, as the <em>H. annuus</em> population was already very sensitive (plants died in 1/8 of recommended rate in a dose-response study). All tested herbicides, except dicamba, can be used for satisfactory <em>H. annuus</em> control in maize, while glyphosate can be used for control of the species in non-agricultural lands.</p>","PeriodicalId":20220,"journal":{"name":"Phytoparasitica","volume":"102 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-01-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139554066","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-23DOI: 10.1007/s12600-024-01120-2
Naveen Rao, Ram Karan Gaur, Satnam Singh, R. R. Rachana, Rishi Kumar, Suneet Pandher, Ramandeep Kaur, Sunita Yadav, Shashikant S. Udikeri, A. G. Srinivas
Thrips have emerged as major sucking pests of American cotton Gossypium hirsutum L., limiting crop productivity through direct feeding and transmitting viral pathogens. Thrips have been long presumed to be a single species in cotton in northern India, with all the studies reporting it as onion thrips Thrips tabaci Lindeman (Thysanoptera: Thripidae). Even the majority of work from southern and central India reports it as the sole species in their studies conducted on pesticide efficacy, population dynamics, and host plant resistance etc. The present study entailed the sampling of cotton crop from 22 distinct locations representing the north-western, central, and southern zones of India using both morphological and molecular methods. The study reports the prevalence of a thrips species complex in cotton, which is dominated by melon thrips, Thrips palmi Karny (Thysanoptera: Thripidae), with the coexistence of other thrips species, viz., T. tabaci, Scirtothrips sp.,(Thysanoptera: Thripidae) and common blossom thrips, Frankliniella schultzei Trybom (Thysanoptera: Thripidae). Our studies also throw light on the maiden reports of occurrence of orchid thrips, Chaetanaphothrips orchidii Moulton (Thysanoptera: Thripidae) and Asprothrips bimaculatus Michel & Ryckewaert (Thysanoptera: Dendrothripinae) thrips species in cotton from India. The genetic diversity analysis of T. palmi revealed the presence of cryptic species, and haplotyping showed the existence of 53 haplotypes globally, out of which two new haplotypes have been reported in the present study. The possible reasons for the change in cotton thrips composition from a single species to a complex over the years have also been analyzed using historical and conventional population dynamics data gathered over the past 15 years, which categorically indicated that the invasion of new species over the previous years might be responsible for the change in the population structure of thrips in cotton.