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Molecular cloning, purification, and characterization of a novel thermostable cinnamoyl esterase from Lactobacillus helveticus KCCM 11223 helveticus乳杆菌KCCM 11223耐热肉桂酯酶的分子克隆、纯化和特性研究
Pub Date : 2017-01-03 DOI: 10.1080/10826068.2016.1275011
Y. Song, S. Baik
ABSTRACT A gene encoding cinnamoyl esterase (CE), which breaks down chlorogenic acid (ChA) into caffeic and quinic acids, was cloned from Lactobacillus helveticus KCCM 11223. The gene with an open reading frame of 759 nucleotides was expressed in Escherichia coli, which resulted in a 51.6-fold increase in specific activity compared to L. helveticus KCCM 11223. The recombinant CE exists as a monomeric enzyme having a molecular weight of 27.4 kDa. Although the highest activity was observed at pH 7, the enzyme showed stable activity at pH 4.0–10.0. Its optimum temperature was 65°C, and it also possessed a thermophilic activity: the half-life of CE was 24.4 min at 65°C. The half-life of CE was 145.5, 80.5, and 24.4 min at 60, 62, and 65°C, respectively. The Km and Vmax values for ChA were 0.153 mM and 559.6 µM/min, respectively. Moreover, the CE showed the highest substrate specificity with methyl caffeate among other methyl esters of hydroxycinnamic acids such as methyl ferulate, methyl sinapinate, methyl p-coumarate, and methyl caffeate. Ca2+, Cu2+, and Fe2+ significantly reduced the relative activity on ChA up to 70%. This is the first report on a thermostable CE from lactic acid bacteria that can be useful to hydrolyze ChA from plant cell walls.
摘要从helveticus乳杆菌KCCM 11223中克隆了一个编码肉桂酰酯酶(CE)的基因,该基因可将绿原酸(ChA)分解为咖啡酸和奎宁酸。该基因在大肠杆菌中表达,其开放阅读框长度为759个核苷酸,比L. helveticus KCCM 11223的比活性提高了51.6倍。重组CE以单体酶形式存在,分子量为27.4 kDa。该酶在pH值为7时活性最高,在pH值为4.0 ~ 10.0时活性稳定。它的最适温度为65℃,并且还具有嗜热活性:CE在65℃时的半衰期为24.4 min。CE在60℃、62℃和65℃时的半衰期分别为145.5、80.5和24.4 min。ChA的Km和Vmax分别为0.153 mM和559.6µM/min。此外,CE对咖啡酸甲酯的底物特异性在其他羟基肉桂酸甲酯中最高,如阿威酸甲酯、辛纳酸甲酯、对香豆酸甲酯和咖啡酸甲酯。Ca2+、Cu2+和Fe2+显著降低了对ChA的相对活性,最高可达70%。这是首次报道从乳酸菌中提取的可用于水解植物细胞壁中ChA的耐热CE。
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引用次数: 17
Production of human mutant biologically active hepatocyte growth factor in Chinese hamster ovary cells 人突变型生物活性肝细胞生长因子在中国仓鼠卵巢细胞中的产生
Pub Date : 2017-01-03 DOI: 10.1080/10826068.2016.1275010
Dongsheng Xu, Aini Wan, Lin Peng, Yun Chen, Yang He, Jianfeng Yang, Jian Jin
ABSTRACT Hepatocyte growth factor (HGF) is a potent multifunctional cytokine that affects proliferation, migration, and morphogenesis of various cells. HGF is secreted as an inactive single-chain precursor protein and activated by the cleavage of serine proteases to form heterodimers. In our current study, the cleavage site of HGF was blocked by replaced Arg 494 of Glu (R494E) that resulted in the single-chain HGF (R494E) unable to be cleaved by serine proteases. We established Chinese hamster ovary (CHO) cells overexpressing HGF (R494E), the expression of HGF (R494E) achieved 12 mg/L and was similar to a previously reported study. The recombinant protein was then purified from culture medium using a two-step chromatographic procedure that resulted in about a 40% recovery rate. The purified HGF (R494E) was obtained as a single-chain active protein. It concluded that HGF (R494E) exhibited a biologically active protein and the overexpressing CHO cell line supplied sufficient material for future studies. The R494E replacement of the cleavage site would be beneficial to the utility of other similar therapeutic proteins.
肝细胞生长因子(HGF)是一种有效的多功能细胞因子,影响各种细胞的增殖、迁移和形态发生。HGF作为一种无活性的单链前体蛋白分泌,通过丝氨酸蛋白酶裂解形成异源二聚体而被激活。在我们目前的研究中,HGF的切割位点被Glu (R494E)的替换Arg 494阻断,导致单链HGF (R494E)无法被丝氨酸蛋白酶切割。我们建立了过表达HGF (R494E)的中国仓鼠卵巢(CHO)细胞,HGF (R494E)的表达量达到12 mg/L,与文献报道相似。然后用两步色谱法从培养基中纯化重组蛋白,回收率约为40%。纯化的HGF (R494E)为单链活性蛋白。结果表明,HGF (R494E)是一种具有生物活性的蛋白,CHO细胞株的过表达为今后的研究提供了充分的材料。R494E替代切割位点将有利于其他类似治疗蛋白的应用。
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引用次数: 1
Preparation of cellulase concoction using differential adsorption phenomenon 利用差动吸附现象制备纤维素酶调合物
Pub Date : 2017-01-03 DOI: 10.1080/10826068.2016.1275009
S. Birhade, Mukesh Pednekar, Shilpa Sagwal, A. Odaneth, A. Lali
ABSTRACT Controlled depolymerization of cellulose is essential for the production of valuable cellooligosaccharides and cellobiose from lignocellulosic biomass. However, enzymatic cellulose hydrolysis involves multiple synergistically acting enzymes, making difficult to control the depolymerization process and generate desired product. This work exploits the varying adsorption properties of the cellulase components to the cellulosic substrate and aims to control the enzyme activity. Cellulase adsorption was favored on pretreated cellulosic biomass as compared to synthetic cellulose. Preferential adsorption of exocellulases was observed over endocellulase, while β-glucosidases remained unadsorbed. Adsorbed enzyme fraction with bound exocellulases when used for hydrolysis generated cellobiose predominantly, while the unadsorbed enzymes in the liquid fraction produced cellooligosaccharides majorly, owing to its high endocellulases activity. Thus, the differential adsorption phenomenon of the cellulase components can be used for the controlling cellulose hydrolysis for the production of an array of sugars.
纤维素的受控解聚对于从木质纤维素生物质中生产有价值的纤维素低聚糖和纤维素二糖至关重要。然而,酶解纤维素涉及多种协同作用的酶,这使得难以控制解聚过程并产生所需的产物。这项工作利用纤维素酶组分对纤维素底物的不同吸附特性,旨在控制酶的活性。与合成纤维素相比,纤维素酶更有利于预处理纤维素生物质的吸附。胞外酶的吸附优于胞内酶,而β-葡萄糖苷酶则不被吸附。当用于水解时,结合胞外酶的吸附酶部分主要产生纤维素二糖,而液体部分中未吸附的酶主要产生纤维素低聚糖,因为它具有高的胞内酶活性。因此,纤维素酶组分的差异吸附现象可用于控制纤维素水解以生产一系列糖。
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引用次数: 6
Comparison of different artificial neural network architectures in modeling of Chlorella sp. flocculation 不同人工神经网络结构在小球藻絮凝建模中的比较
Pub Date : 2017-01-03 DOI: 10.1080/10826068.2016.1275013
Alireza Moosavi Zenooz, F. Ashtiani, R. Ranjbar, F. Nikbakht, O. Bolouri
ABSTRACT Biodiesel production from microalgae feedstock should be performed after growth and harvesting of the cells, and the most feasible method for harvesting and dewatering of microalgae is flocculation. Flocculation modeling can be used for evaluation and prediction of its performance under different affective parameters. However, the modeling of flocculation in microalgae is not simple and has not performed yet, under all experimental conditions, mostly due to different behaviors of microalgae cells during the process under different flocculation conditions. In the current study, the modeling of microalgae flocculation is studied with different neural network architectures. Microalgae species, Chlorella sp., was flocculated with ferric chloride under different conditions and then the experimental data modeled using artificial neural network. Neural network architectures of multilayer perceptron (MLP) and radial basis function architectures, failed to predict the targets successfully, though, modeling was effective with ensemble architecture of MLP networks. Comparison between the performances of the ensemble and each individual network explains the ability of the ensemble architecture in microalgae flocculation modeling.
以微藻为原料生产生物柴油需要在细胞生长和收获后进行,而絮凝法是微藻收获和脱水最可行的方法。絮凝建模可用于评价和预测其在不同影响参数下的性能。然而,微藻絮凝过程的建模并不简单,尚未在所有实验条件下进行,主要是由于不同絮凝条件下微藻细胞在絮凝过程中的行为不同。本研究采用不同的神经网络架构对微藻絮凝过程建模进行了研究。用氯化铁对小球藻进行不同条件下的絮凝处理,并用人工神经网络对实验数据进行建模。多层感知器(MLP)的神经网络结构和径向基函数的神经网络结构都不能成功地预测目标,而MLP网络的集成结构可以有效地建模。集成体系结构与单个网络性能的比较说明了集成体系结构在微藻絮凝建模中的能力。
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引用次数: 13
Multiple affinity purification of a baculovirus-derived recombinant prion protein with in vitro ability to convert to its pathogenic form 杆状病毒衍生的重组朊病毒蛋白的多重亲和纯化,具有体外转化为致病性形式的能力
Pub Date : 2017-01-02 DOI: 10.1080/10826068.2016.1155058
M. Imamura, N. Kato, Y. Iwamaru, S. Mohri, T. Yokoyama, Y. Murayama
ABSTRACT We previously showed that baculovirus-derived recombinant prion protein (Bac-PrP) can be converted to the misfolded infectious form (PrPSc) by protein misfolding cyclic amplification, an in vitro conversion technique. Bac-PrP, with post-translational modifications, would be useful for various applications such as using PrP as an immunogen for generating anti-PrP antibody, developing anti-prion drugs or diagnostic assays using in vitro conversion systems, and establishing an in vitro prion propagation model. For this purpose, highly purified Bac-PrP with in vitro conversion activity is necessary for use as a PrPC source, to minimize contamination. Furthermore, an exogenous affinity tag-free form is desirable to avoid potential steric interference by the affinity tags during the conversion process. In this study, we established purification methods for the untagged Bac-PrP under native conditions by combining exogenous double-affinity tags, namely, a polyhistidine-tag and a profinity eXact tag, with an octarepeat sequence of the N-terminal region of PrP, which has metal ion-binding affinity. The untagged Bac-PrP with near-homogeneity was obtained by three-step affinity purification, and it was shown that the final, purified Bac-PrP could convert to its pathogenic form. The presented purification procedure could be applied not only to PrP but also to other eukaryotic, recombinant proteins that require high purity and intact physiological activity.
我们之前已经证明,杆状病毒衍生的重组朊病毒蛋白(Bac-PrP)可以通过蛋白质错误折叠循环扩增(一种体外转化技术)转化为错误折叠的感染形式(PrPSc)。经过翻译后修饰的Bac-PrP可用于多种应用,如利用PrP作为产生抗PrP抗体的免疫原,利用体外转化系统开发抗朊病毒药物或诊断分析,以及建立体外朊病毒繁殖模型。为此,必须使用具有体外转化活性的高纯度Bac-PrP作为PrPC源,以尽量减少污染。此外,需要一种外源的无亲和标签形式,以避免在转换过程中亲和标签的潜在空间干扰。在本研究中,我们将外源双亲和标签(即多组氨酸标签和亲和eXact标签)与具有金属离子结合亲和性的PrP n端区域的八重序列相结合,建立了在天然条件下纯化未标记Bac-PrP的方法。通过三步亲和纯化获得了接近同源性的未标记Bac-PrP,结果表明纯化的最终Bac-PrP可以转化为致病性形式。该纯化方法不仅适用于PrP,也适用于其他要求高纯度和完整生理活性的真核重组蛋白。
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引用次数: 5
Cost-effective and concurrent production of industrially valuable xylano-pectinolytic enzymes by a bacterial isolate Bacillus pumilus AJK 矮芽孢杆菌AJK的低成本和同步生产具有工业价值的木聚糖-果胶分解酶
Pub Date : 2017-01-02 DOI: 10.1080/10826068.2016.1155059
A. Kaur, A. Singh, A. Dua, R. Mahajan
ABSTRACT Simultaneous production of xylanase and pectinase by Bacillus pumilus AJK under submerged fermentation was investigated in this study. Under optimized conditions, it produced 315 ± 16 IU/mL acidic xylanase, 290 ± 20 IU/mL alkaline xylanase, and 88 ± 9 IU/mL pectinase. The production of xylano-pectinolytic enzymes was the highest after inoculating media (containing 2% each of wheat bran and Citrus limetta peel, 0.5% peptone, 10 mM MgSO4, pH 7.0) with 2% of 21-hr-old culture and incubated at 37°C for 60 hr at 200 rpm. Xylanase retained 100% activity from pH 6.0 to10.0 after 3 hr of incubation, while pectinase showed 100% stability from pH 6.0 to 9.0 even after 6 hr of incubation. Cost-effective and concurrent production of xylanase and pectinase by a bacterial isolate in the same production media suggests its potential for various biotechnological applications. This is the first report of simultaneous production of industrially important extracellular xylano-pectinolytic enzymes by B. pumilus.
摘要本试验研究了短小芽孢杆菌AJK在深层发酵条件下同时生产木聚糖酶和果胶酶。在优化条件下,产酸木聚糖酶315±16 IU/mL,碱性木聚糖酶290±20 IU/mL,果胶酶88±9 IU/mL。用2%的培养基(含2%的麦麸和柠檬皮,0.5%的蛋白胨,10 mM MgSO4, pH 7.0)接种21小时培养,在37℃,200 rpm下培养60小时后,木聚糖-果胶水解酶的产量最高。木聚糖酶在pH 6.0 ~ 10.0范围内培养3小时后仍保持100%的活性,而果胶酶在pH 6.0 ~ 9.0范围内培养6小时后仍保持100%的稳定性。一种细菌分离物在同一生产介质中同时生产木聚糖酶和果胶酶具有成本效益,这表明它具有多种生物技术应用的潜力。这是首次报道短小芽孢杆菌同时生产工业上重要的胞外木聚糖-果胶水解酶。
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引用次数: 26
Biotransformation of penicillin V to 6-aminopenicillanic acid using immobilized whole cells of E. coli expressing a highly active penicillin V acylase 利用表达高活性青霉素V酰化酶的固定化大肠杆菌全细胞将青霉素V转化为6-氨基青霉素酸
Pub Date : 2017-01-02 DOI: 10.1080/10826068.2016.1163580
V. S. Avinash, Palna Dinesh Chauhan, Shraddha Y. Gaikwad, A. Pundle
ABSTRACT The production of 6-aminopenicillanic acid (6-APA) is a key step in the manufacture of semisynthetic antibiotics in the pharmaceutical industry. The penicillin G acylase from Escherichia coli has long been utilized for this purpose. However, the use of penicillin V acylases (PVA) presents some advantages including better stability and higher conversion rates. The industrial application of PVAs has so far been limited due to the nonavailability of suitable bacterial strains and cost issues. In this study, whole-cell immobilization of a recombinant PVA enzyme from Pectobacterium atrosepticum expressed in E. coli was performed. Membrane permeabilization with detergent was used to enhance the cell-bound PVA activity, and the cells were encapsulated in calcium alginate beads and cross-linked with glutaraldehyde. Optimization of parameters for the biotransformation by immobilized cells showed that full conversion of pen V to 6-APA could be achieved within 1 hr at pH 5.0 and 35°C, till 4% (w/v) concentration of the substrate. The beads could be stored for 28 days at 4°C with minimal loss in activity and were reusable up to 10 cycles with 1-hr hardening in CaCl2 between each cycle. The high enzyme productivity of the PVA enzyme system makes a promising case for its application for 6-APA production in the industry.
6-氨基青霉素酸(6-APA)的生产是制药工业生产半合成抗生素的关键步骤。从大肠杆菌中提取的青霉素G酰化酶早已被用于此目的。然而,使用青霉素V酰化酶(PVA)具有一些优点,包括更好的稳定性和更高的转化率。由于没有合适的菌株和成本问题,聚乙烯醇的工业应用到目前为止受到限制。在这项研究中,从大肠杆菌中表达的萎缩败乳杆菌重组PVA酶进行了全细胞固定化。用洗涤剂渗透膜来增强细胞结合PVA的活性,并用海藻酸钙珠包裹细胞,并与戊二醛交联。对固定化细胞生物转化参数的优化表明,在pH 5.0、35℃、底物浓度为4% (w/ V)的条件下,可在1小时内将pen V完全转化为6-APA。微球可以在4°C下保存28天,活性损失最小,可重复使用10次,每次循环之间在CaCl2中硬化1小时。PVA酶体系的高酶产率为其在6-APA生产中的工业应用提供了前景。
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引用次数: 12
Antiproliferative activity of Curcuma phaeocaulis Valeton extract using ultrasonic assistance and response surface methodology 超声辅助及响应面法研究姜黄提取物的抗增殖活性
Pub Date : 2017-01-02 DOI: 10.1080/10826068.2016.1155061
Xiaoqin Wang, Ying Jiang, Daode Hu
ABSTRACT The objective of the study was to optimize the ultrasonic-assisted extraction of curdione, furanodienone, curcumol, and germacrone from Curcuma phaeocaulis Valeton (Val.) and investigate the antiproliferative activity of the extract. Under the suitable high-performance liquid chromatography condition, the calibration curves for these four tested compounds showed high levels of linearity and the recoveries of these four compounds were between 97.9 and 104.3%. Response surface methodology (RSM) combining central composite design and desirability function (DF) was used to define optimal extraction parameters. The results of RSM and DF revealed that the optimum conditions were obtained as 8 mL g−1 for liquid–solid ratio, 70% ethanol concentration, and 20 min of ultrasonic time. It was found that the surface structures of the sonicated herbal materials were fluffy and irregular. The C. phaeocaulis Val. extract significantly inhibited the proliferation of RKO and HT-29 cells in vitro. The results reveal that the RSM can be effectively used for optimizing the ultrasonic-assisted extraction of bioactive components from C. phaeocaulis Val. for antiproliferative activity.
摘要:以姜黄为原料,优选超声辅助提取莪术中莪术酮、呋喃二烯酮、莪术酚和大黄酮的工艺条件,并考察其抗肿瘤活性。在合适的高效液相色谱条件下,4种化合物的标度曲线线性良好,加样回收率在97.9 ~ 104.3%之间。采用响应面法(RSM)结合中心组合设计和期望函数法(DF)确定最佳提取参数。RSM和DF结果表明,最佳条件为液固比为8 mL g−1,乙醇浓度为70%,超声时间为20 min。结果表明,经超声处理的药材表面结构呈蓬松状、不规则状。褐毛参提取物对RKO细胞和HT-29细胞的体外增殖有明显抑制作用。结果表明,RSM可有效地优化超声辅助提取法提取黄芪抗增殖活性成分的工艺条件。
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引用次数: 9
Influence of biochar application on potassium-solubilizing Bacillus mucilaginosus as potential biofertilizer 施用生物炭对溶钾粘液芽孢杆菌作为潜在生物肥料的影响
Pub Date : 2017-01-02 DOI: 10.1080/10826068.2016.1155062
Sainan Liu, Wenzhu Tang, Fan Yang, J. Meng, Wenfu Chen, Xianzhen Li
ABSTRACT Biochar can enhance soil fertility to increase agricultural productivity, whereas its improvement in soil microbial activity is still unclear. In this article, the influence of biochar on the cell growth and the potassium-solubilizing activity of Bacillus mucilaginosus AS1153 was examined. The impact on cell growth is related to the biochar-derived feedstocks and the particle size of biochar. Both intrinsic features and inner component fraction can promote the cell growth of B. mucilaginosus AS1153. The potassium-solubilizing activity was increased by 80% when B. mucilaginosus was incubated in conjunction with the biochar derived from corn stover. The survival time of B. mucilaginosus also was prolonged by adsorption in biochar. The experimental results suggested that the biochar containing B. mucilaginosus could be used as a potential biofertilizer to sustain crop production.
生物炭可以提高土壤肥力,提高农业生产力,但其对土壤微生物活性的改善作用尚不清楚。本文研究了生物炭对黏液芽孢杆菌AS1153细胞生长和溶钾活性的影响。对细胞生长的影响与生物炭来源的原料和生物炭的粒度有关。本征成分和内组分组分均能促进黏液双歧杆菌AS1153的细胞生长。黏液芽孢杆菌与玉米秸秆生物炭共同培养,溶钾活性提高80%。生物炭吸附可延长黏液芽孢杆菌的存活时间。试验结果表明,含有黏液双歧杆菌的生物炭可以作为一种潜在的生物肥料来维持作物的生产。
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引用次数: 34
Cell separation: Potentials and pitfalls 细胞分离:潜力和缺陷
Pub Date : 2017-01-02 DOI: 10.1080/10826068.2016.1163579
Narges Rahmanian, M. Bozorgmehr, monire torabi, A. Akbari, A. Zarnani
ABSTRACT Cell separation techniques play an indispensable part in numerous basic biological studies and even clinical settings. Although various cell isolation methods with diverse applications have been devised so far, not all of them have been able to gain widespread popularity among researchers and clinicians. There is not a single method known to be advantageous over all cell isolation techniques, and in fact, it is the researcher’s aim in performing a study that determines the most suitable method. A perfect method for one study might not be necessarily a proper choice for another and likewise, expensive and complex isolation methods might not always be the best choices. There are several criteria such as cell purity, viability, activation status, and frequency that need to be given serious thought before selecting an isolation technique. Moreover, time and cost are two of the key elements that should be taken into consideration before implementing a project. Hence, here we provide a succinct description of six more popular cell separation methods with respect to their principles, advantages, and disadvantages as well as their most common applications. We further provide several key features of each technique so that it helps the researchers to take the first step toward opting for the best method that fits well into their projects.
细胞分离技术在许多基础生物学研究甚至临床环境中起着不可或缺的作用。尽管到目前为止已经设计出了各种不同用途的细胞分离方法,但并不是所有的方法都能在研究人员和临床医生中得到广泛的普及。没有一种已知的方法优于所有的细胞分离技术,事实上,研究人员进行研究的目的是确定最合适的方法。一项研究的完美方法可能不一定是另一项研究的正确选择,同样,昂贵而复杂的分离方法可能并不总是最佳选择。在选择分离技术之前,需要认真考虑几个标准,如细胞纯度、活力、激活状态和频率。此外,时间和成本是在实施项目之前应该考虑的两个关键因素。因此,在这里,我们提供了六种更流行的细胞分离方法的简要描述,包括它们的原理,优点和缺点,以及它们最常见的应用。我们进一步提供了每种技术的几个关键特性,以便帮助研究人员迈出选择适合其项目的最佳方法的第一步。
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引用次数: 16
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Preparative Biochemistry and Biotechnology
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