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Involvement of nitrilases in auxin biosynthesis and their role in plant development and stress response. 硝化酶参与植物生长素的合成及其在植物发育和逆境反应中的作用。
IF 4 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2025-11-13 DOI: 10.1093/pcp/pcaf152
Barbara Wójcikowska

NITRILASEs (NITs) are enzymes that have been identified across kingdoms. Nitrilases are industrially important hydrolases widely used in the production of valuable chemicals and medicines. In plants, nitrilases are phylogenetically divided into two groups: NIT1 and NIT4. The NIT1 (NIT1-3) subfamily detoxifying nitriles is specific to the Brassicaceae and catalyze the conversion of indole-3-acetonitrile (IAN), derived from indole glucosinolates (IGs) or indole-3-acetaldoxime (IAOx), into indole-3-acetic acid (IAA), the principal auxin, which provides an evolutionary advantage since it's a growth hormone. The NIT1 subfamily has been implicated in the catabolism of indole acetamide (IAM), although this has yet to be confirmed in planta. NIT4 appears to function in cyanide detoxification and exhibits strong specificity toward β-cyanoalanine. Additionally, it is hypothesized that NIT4, as well as enzymes of the NIT1 subfamily, might be involved in phenylacetic acid (PAA) formation from phenylacetonitrile/benzyl cyanide (PAN/BnCN). Crop plants, such as Zea mays and Oryza sativa, have been used to study NITs sporadically, consequently, our understanding of the role of nitrilases is primarily derived from studies of the model plant Arabidopsis thaliana, including single or sparse multiple mutants, reporter lines, or overexpressing lines. This review mainly focuses on the NIT1 subfamily, which plays a role in root and flower development. However, NITs expression and activity have primarily been demonstrated under plant stress conditions, biotic and abiotic stress, such as saline, drought, sulfate deficiency, thermomorphogenesis, during which NIT-dependent auxin biosynthesis is activated. In addition, the role of NITs has been confirmed in morphogenetic processes in in vitro cultures, highlighting their role in stress-induced developmental reprogramming.

NITRILASEs (NITs)是一种跨界鉴定的酶。硝化酶是工业上重要的水解酶,广泛用于生产有价值的化学品和药品。在植物中,硝化酶在系统发育上分为两类:NIT1和NIT4。NIT1 (NIT1-3)亚家族解毒腈是油菜科特有的,可以催化吲哚-3-乙腈(IAN)转化为吲哚-3-乙酸(IAA),这是一种主要的生长素,因为它是一种生长激素,因此具有进化优势。NIT1亚家族与吲哚乙酰胺(IAM)的分解代谢有关,尽管这尚未在植物中得到证实。NIT4似乎在氰化物解毒中起作用,并对β-氰丙氨酸表现出很强的特异性。此外,假设NIT4以及NIT1亚家族的酶可能参与了苯乙腈/苯氰(PAN/BnCN)生成苯乙酸(PAA)的过程。玉米和水稻等作物植物已被零星地用于研究nitrase,因此,我们对nitrase作用的理解主要来自于对模式植物拟南芥的研究,包括单或稀疏多突变体、报告系或过表达系。本文主要综述了在根和花发育中起重要作用的NIT1亚家族。然而,nit的表达和活性主要在植物胁迫条件下被证明,生物和非生物胁迫,如生理盐水、干旱、硫酸盐缺乏、热形态发生,在这些条件下,nit依赖性生长素的生物合成被激活。此外,在体外培养中,NITs在形态发生过程中的作用已得到证实,强调了它们在应激诱导的发育重编程中的作用。
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引用次数: 0
Characterization of Fucoxanthin-Deficient Strains in the Haptophyte Tisochrysis lutea Induced by Heavy-Ion Beam Irradiation. 重离子束辐照诱导黄叶褐藻缺乏岩藻黄素菌株的特性研究。
IF 4 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2025-11-12 DOI: 10.1093/pcp/pcaf149
Shohei Kubo, Tomoharu Sano, Masanobu Kawachi, Yoshihiro Hase, Katsuya Satoh, Yutaka Oono, Yasushi Iwata, Hirotoshi Endo, Hiroya Araie, Kohei Yoneda, Yoshiaki Maeda, Iwane Suzuki

Although microalgae such as diatoms and haptophytes have been studied to optimize fucoxanthin production, the complete biosynthetic pathway of fucoxanthin remains unclear. In this study, we subjected the haptophyte Tisochrysis lutea cells to heavy-ion beam irradiation to induce random mutations and obtained two greenish strains, GR1 and GR2, following exposures to 45 Gy and 100 Gy, respectively. The GR1 strain exhibited slow growth, whereas GR2 showed growth comparable to the wild-type strain. Neither GR1 nor GR2 accumulated fucoxanthin; instead, both strains accumulated fucoxanthin biosynthetic intermediates, haptoxanthin and phaneroxanthin, and harbored 74 and 148 mutation sites, respectively. As expected, higher radiation doses resulted in a greater number of mutations. Over 80% of these mutations consisted of short nucleotide insertions, primarily 4 to 8 bp in length. Additionally, mutations were identified in orthologs of the ZEP1 and CRTISO5 genes known in the diatom Phaeodactylum tricornutum to encode enzymes that convert haptoxanthin to phaneroxanthin and phaneroxanthin to fucoxanthin in GR1 and GR2 strains, respectively. The loss of fucoxanthin decreased photosynthetic capacity to some extent. However, the amounts of chlorophyll a and c did not change, suggesting that haptoxanthin and phaneroxanthin functioned as photosynthetic accessory pigments in the light-harvesting antennae. Because the genomic analysis results aligned with those from pigment analysis, our findings demonstrate that ZEP1 and CRTISO5 in T. lutea cells are involved in fucoxanthin biosynthesis and support the broader application of heavy-ion beam irradiation in fundamental microalgal research.

虽然已经研究了硅藻和褐藻等微藻来优化岩藻黄素的生产,但岩藻黄素的完整生物合成途径尚不清楚。在本研究中,我们对黄茶细胞进行重离子束照射诱导随机突变,分别在45 Gy和100 Gy照射下获得了两个绿色菌株GR1和GR2。GR1菌株生长缓慢,而GR2菌株的生长与野生型菌株相当。GR1和GR2均未积累岩藻黄质;相反,这两种菌株都积累了岩藻黄素生物合成中间体,半黄素和phaneroxanthin,并分别拥有74和148个突变位点。正如预期的那样,更高的辐射剂量导致了更多的突变。超过80%的突变包括短核苷酸插入,主要长度为4到8 bp。此外,在硅藻褐藻(Phaeodactylum tricornutum)中已知的ZEP1和CRTISO5基因的同源基因中发现了突变,这些基因编码的酶分别在GR1和GR2菌株中将半黄质转化为phaneroxanthin和将phaneroxanthin转化为岩藻黄质。岩藻黄素的损失在一定程度上降低了光合能力。而叶绿素a和c的含量没有变化,说明半黄质和phaneroxanthin在捕光触角中起着光合辅助色素的作用。由于基因组分析结果与色素分析结果一致,我们的研究结果表明,T. lutea细胞中的ZEP1和CRTISO5参与岩藻黄素的生物合成,并支持重离子束辐照在基础微藻研究中的更广泛应用。
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引用次数: 0
Strange Plants And The Weirding Climate: Parasitic Plant Physiology Under Climate Change. 奇怪的植物和奇怪的气候:气候变化下的寄生植物生理。
IF 4 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2025-11-11 DOI: 10.1093/pcp/pcaf148
Luiza Teixeira-Costa

Parasitic flowering plants are often seen as keystone species due to the broad influence they exert on communities worldwide. Positive and negative effects associated with parasitic plant infestation have been documented for a variety of species in multiple locations and under different experimental conditions. However, the impact of the different drivers of climate change on these plants has only recently begun to be analyzed in more detail. In this context, most studies have dealt with modelling future distribution ranges of parasite species and assessing potential ecological impacts. Building on this work, this review discusses studies that have employed a more mechanistic approach to investigate different aspects of parasitic plant physiology under climate change. Considering results obtained for both hemi- and holo-parasites, I hypothesize that, in the presence of conditions that improve parasite performance, such as reduced intraspecific competition or increased diversity of host species, elevated levels of atmospheric CO2 can partially alleviate the negative impact of parasitism on host growth. However, this reduction of negative impacts is potentially hampered by other drivers of climate change, such as extreme high temperatures and severe drought events. Future research should strive to analyze the combined impact of different components of climate change simultaneously, preferably considering a wider diversity of parasitic plant species.

寄生开花植物通常被视为关键物种,因为它们对世界范围内的群落具有广泛的影响。在多个地点和不同的实验条件下,已经记录了与寄生植物侵染有关的各种物种的积极和消极影响。然而,气候变化的不同驱动因素对这些植物的影响直到最近才开始进行更详细的分析。在这种情况下,大多数研究都涉及对寄生虫物种未来分布范围的建模和评估潜在的生态影响。在此基础上,本文讨论了采用更机械的方法研究气候变化下寄生植物生理不同方面的研究。考虑到对半寄生和全寄生的研究结果,我假设,在改善寄生性能的条件下,如减少种内竞争或增加寄主物种多样性,大气中二氧化碳水平的升高可以部分减轻寄生对寄主生长的负面影响。然而,这种负面影响的减少可能会受到气候变化的其他驱动因素的阻碍,例如极端高温和严重干旱事件。未来的研究应努力同时分析气候变化不同组成部分的综合影响,最好考虑更广泛的寄生植物物种多样性。
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引用次数: 0
Lipid deacylation facilitates cyanobacterial adaptation to low-temperature stress. 脂质去酰化有助于蓝藻适应低温胁迫。
IF 4 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2025-11-10 DOI: 10.1093/pcp/pcaf147
Pan Liao
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引用次数: 0
Host Defense Responses of Mesquite (Prosopis laevigata, Fabaceae) Trees Against the Mistletoe (Psittacanthus calyculatus, Loranthaceae) During the Early Stage of Infection. 豆科豆豆树(Prosopis laevigata, Fabaceae)对槲寄生侵染早期寄主防御反应的研究
IF 4 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2025-11-03 DOI: 10.1093/pcp/pcaf142
César A Ávila-Hernández, Mariana A Rojas-Raya, Elizabeth Quintana-Rodríguez, Enrique Ramírez-Chávez, Jorge Molina- Torres, Domancar Orona-Tamayo, Edmundo Lozoya-Gloria

Mesquite (Prosopis laevigata, Fabaceae) is a legume widely distributed in Mexico, infested by the mistletoe Psittacanthus calyculatus, Loranthaceae) a parasitic plant that absorbs water and nutrients from the mesquite. For parasitism to become established, the mistletoe must evade host defenses. To date, these defenses have only been studied in hosts with advanced parasitic infestations, but the initial defense of mesquite against these infestations remains unknown. The objective of this work was to investigate the early stress responses of mesquite trees after the first physical contact during infection by P. calyculatus. To do so, we first artificially inoculated mistletoe seeds and placed them on mesquite branches to initiate the parasitism. Mistletoe inoculations induced the early production of the phytohormones salicylic acid and jasmonic acid. These changes were accompanied by higher cell wall invertase activity, which precedes the increase in sucrose, glucose, and fructose. H₂O₂ formation and superoxide dismutase and peroxidase activity were also induced, while catalase activity decreased. Analyses revealed the presence of phenolic compounds as a defensive response against the mistletoe and, finally, elevated phenylalanine ammonia lyase activity after mistletoe inoculation. These data suggest that host trees recognize the presence of parasitic plants and trigger immune signaling responses well before haustorium formation. This is the first step toward understanding the interaction between the host tree and the mistletoe at beginning of parasitism.

豆科植物豆科(Prosopis laevigata, Fabaceae)是一种广泛分布于墨西哥的豆科植物,寄生于槲寄生寄生植物Psittacanthus calyculatus, Loranthaceae),从豆科植物中吸收水分和营养。寄生要建立起来,槲寄生必须避开宿主的防御。到目前为止,这些防御措施只在有高级寄生虫感染的宿主中进行了研究,但豆科植物对这些感染的初始防御措施仍然未知。本研究的目的是研究豆科树在首次接触豆科树感染后的早期应激反应。为此,我们首先人工接种槲寄生种子,并将其放置在豆科植物的树枝上,以启动寄生。槲寄生接种诱导了水杨酸和茉莉酸的早期产生。这些变化伴随着更高的细胞壁转化酶活性,这先于蔗糖、葡萄糖和果糖的增加。过氧化氢酶活性降低,过氧化氢酶活性降低,过氧化氢酶活性降低。分析显示酚类化合物的存在是对槲寄生的防御反应,最后,槲寄生接种后苯丙氨酸解氨酶活性升高。这些数据表明,寄主树识别寄生植物的存在,并在吸器形成之前触发免疫信号反应。这是了解寄生开始时寄主树和槲寄生之间相互作用的第一步。
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引用次数: 0
Interspecific secondary plasmodesmata at parasitic interface. 寄生界面种间次生胞间连丝。
IF 4 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2025-11-03 DOI: 10.1093/pcp/pcaf143
Koh Aoki, Ayako Tsushima

Obligate parasitic plants often establish symplastic connections with their hosts. This symplastic continuity is mediated by plasma membrane-lined channels referred to as interspecific secondary plasmodesmata, which develop at the interface between the parasite and its host. However, the molecular mechanisms underlying the formation of these interspecific secondary plasmodesmata remain unclear. In this mini review, we summarize current knowledge of plasmodesmata biogenesis at diverse cellular boundaries with distinct developmental origins, including those at graft junctions and between mesophyll and bundle sheath cells. Based on the literature review, we hypothesize that the formation of interspecific secondary plasmodesmata involves three key events: cell wall thinning, membrane rearrangement, and metabolic regulation. Finally, we discuss future research directions to elucidate the molecular basis of interspecific secondary plasmodesmata formation.

专性寄生植物通常与寄主建立共塑联系。这种共塑连续性是由被称为种间次生胞间连丝的质膜内衬通道介导的,这些通道在寄生虫和宿主之间的界面上发育。然而,这些种间次生胞间连丝形成的分子机制尚不清楚。在这篇综述中,我们总结了目前关于胞间连丝在不同细胞边界和不同发育起源的生物发生的知识,包括移植物连接和叶肉细胞和束鞘细胞之间的胞间连丝。基于文献回顾,我们推测种间次生胞间连丝的形成涉及细胞壁变薄、膜重排和代谢调节三个关键过程。最后,对进一步阐明种间次生连丝形成的分子基础进行了展望。
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引用次数: 0
Spatial Localization of Strigolactone Biosynthesis and Secretion in Marchantia paleacea. 古地香草独角麦内酯生物合成与分泌的空间定位。
IF 4 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2025-10-30 DOI: 10.1093/pcp/pcaf144
Akiyoshi Yoda, Kyoichi Kodama, Masaki Shimamura, Junko Kyozuka

Phosphorus is an essential nutrient critical for plant growth and development, yet its availability in soil is often limited. Consequently, most land plants establish symbiotic relationships with arbuscular mycorrhizal fungi (AMF) to enhance phosphate uptake. Strigolactones (SLs) function as rhizosphere signaling molecules that promote AMF symbiosis, distinct from their role as phytohormones regulating various plant functions. We previously identified an SL in Marchantia paleacea and demonstrated that the SLs primarily serve as rhizosphere signals rather than phytohormones in M. paleacea due to the absence of cognate receptors. In this study, we investigate the spatial localization of SL biosynthesis and secretion in M. paleacea. We find that SL biosynthesis genes are predominantly expressed in the basal region of the thallus compared to the distal region. Using Citrine driven by the promoter of MpaCCD8B, an SL biosynthesis gene, we show expression in smooth rhizoids and the ventral epidermis adjacent to these rhizoids, under phosphate-deficient conditions. When plants are cultured on medium, fluorescence is also detected in parenchymal cells, where AMF colonization occurs. In soil conditions, AMF colonization enhances MpaCCD8B expression in parenchymal cells, where AMF colonize. Furthermore, we assess SL secretion through germination assay of root parasitic plant seeds, revealing that exudates from the basal and midrib region exhibit the highest activity. These findings underscore that SLs are synthesized in the basal ventral tissues of M. paleacea and secreted into the rhizosphere, facilitating effective communication with AMF.

磷是植物生长发育的重要营养物质,但其在土壤中的可用性往往有限。因此,大多数陆地植物与丛枝菌根真菌(AMF)建立共生关系,以增强磷酸盐的吸收。独角蜜内酯(SLs)作为根际信号分子促进AMF共生,不同于其作为植物激素调节各种植物功能的作用。我们之前在古马药中发现了一个SL,并证明由于缺乏同源受体,SL主要作为根际信号而不是植物激素。在本研究中,我们研究了真菌SL生物合成和分泌的空间定位。我们发现,与远端区域相比,SL生物合成基因主要表达在菌体的基部区域。利用由SL生物合成基因MpaCCD8B启动子驱动的黄氨酸,我们在缺磷条件下在光滑的根状体和靠近这些根状体的腹侧表皮中表达。当植物在培养基上培养时,在AMF定植发生的实质细胞中也检测到荧光。在土壤条件下,AMF定殖可增强AMF定殖的实质细胞中MpaCCD8B的表达。此外,我们通过根寄生植物种子发芽试验评估SL分泌,发现基部和中脉区域的分泌物表现出最高的活性。这些研究结果表明,SLs在真菌的基部腹侧组织中合成,并分泌到根际,促进了与AMF的有效沟通。
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引用次数: 0
Bigger is better: modern Cannabis trichomes are larger and more productive than their landrace ancestors. 越大越好;现代大麻毛状体比它们的本土祖先更大,更多产。
IF 4 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2025-10-22 DOI: 10.1093/pcp/pcaf105
Matthew Nolan, Qi Guo, Lennard Garcia-de Heer, Lei Liu, Nicolas Dimopoulos, Bronwyn J Barkla, Tobias Kretzschmar

Cannabis sativa L. (Cannabis) is a medicinal plant that produces and stores an abundance of therapeutic and psychoactive secondary metabolites, including phytocannabinoids and terpenes, in the glandular trichomes of its female flowers. We postulate that glandular trichome productivity has been under strong artificial selection in the pursuit for ever more potent cultivars. By comparing glandular trichomes of two modern cultivars and two traditional landraces, contrasting for cannabidiol and tetrahydrocannabinol contents, this study aims to identify drivers of enhanced phytocannabinoid productivity in improved drug cultivars. Fluorescent light microscopy, targeted metabolite analysis, and quantitative proteomics were used to examine differences in trichome morphology and metabolic activity. The increased concentrations of phytocannabinoids and terpenes of modern cannabis cultivars were reflected in larger trichomes that contained more secretory cells compared to traditional landraces. Proteomic analysis indicated that these modern trichome phenotypes were supported by increased metabolic activity, particularly in pathways related to energy production and lipid metabolism. Weighted Gene Co-expression Network Analysis suggested that histone H2A involved in DNA repair, regulator of fatty acid composition 3 involved in non-photosynthetic plastid development and olivetolic acid cyclase involved in phytocannabinoid biosynthesis are central hub proteins associated with high tetrahydrocannabinolic acid production. This study highlights the morphological and molecular differences observed between the specific modern and traditional Cannabis cultivars analysed in this study, offering valuable insights for enhancing phytocannabinoid production through targeted breeding and biotechnological approaches.

大麻是一种药用植物,在其雌花的腺状毛状体中产生并储存大量的治疗性和精神活性次生代谢物,包括植物大麻素和萜烯。我们假设,在追求更强的品种时,腺毛的生产力受到了强烈的人工选择。通过比较两个现代品种和两个传统地方品种的腺毛,比较大麻二酚(CBD)和四氢大麻酚(THC)的含量,旨在确定改良药物品种提高植物大麻素产量的驱动因素。荧光显微镜、靶向代谢物分析和定量蛋白质组学研究了毛状体形态和代谢活性的差异。现代大麻品种的植物大麻素和萜烯浓度的增加反映在更大的毛状体上,与传统的地方品种相比,毛状体含有更多的分泌细胞。蛋白质组学分析表明,这些现代毛状体表型得到了代谢活动增加的支持,特别是在与能量产生和脂质代谢相关的途径中。加权基因共表达网络分析(WGCNA)表明,参与DNA修复的组蛋白H2A (H2AXA)、参与非光合质体发育的脂肪酸组成调节因子3 (RFC3)和参与植物大麻素生物合成的橄榄酸环化酶(OAC)是与高四氢大麻酚酸(THCA)产生相关的中心枢纽蛋白。本研究强调了在本研究中分析的特定现代和传统大麻品种之间观察到的形态和分子差异,为通过有针对性的育种和生物技术方法提高植物大麻素的产量提供了有价值的见解。
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引用次数: 0
The cost of survival: mutation in a barley Strigolactone repressor HvD53A impairs photosynthesis but increases drought tolerance. 生存代价:大麦独角麦内酯抑制因子HvD53A的突变损害了光合作用,但增加了耐旱性。
IF 4 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2025-10-22 DOI: 10.1093/pcp/pcaf095
Magdalena Korek, Weronika Buchcik, Beata Chmielewska, Agata Daszkowska-Golec, Irene M Fontana, Michael Melzer, Goetz Hensel, Jochen Kumlehn, Philip B Brewer, Glen R Uhrig, Marek Marzec

Strigolactones (SLs) are a class of plant hormones that play a crucial role in shaping plant architecture, significantly influencing plant adaptation to harsh environmental conditions. In this study, we examined the effects of a mutation in a component of the barley SL signalling pathway, the SL repressor HvDWARF53A, on plant growth and drought tolerance. We compared the results with those of a previously described barley mutant, which is highly tillered and drought-sensitive, carrying a mutation in the SL receptor gene HvDWARF14. The two mutants, hvd14.d and hvd53a.f, displayed contrasting phenotypes, including differences in plant height, tillering, and drought sensitivity. Under control conditions, ultrastructural analysis of hvd53a.f revealed smaller chloroplasts and fewer grana stacks, which may account for its reduced photosynthetic efficiency. Conversely, transcriptomic analysis linked the differentially expressed genes in hvd53a.f to antioxidation and stress responses, suggesting a potentially enhanced capacity to cope with drought. Further analysis revealed a strong connection between the SL signalling pathway and circadian clock components. Among these, CIRCADIAN CLOCK ASSOCIATED 1 emerged as a potential SL-responsive transcription factor (TF), possibly playing a key role in regulating tillering. Under drought conditions, hvd53a.f exhibited enhanced tolerance, as evidenced by higher relative water content, reduced chlorophyll degradation, and stable, albeit reduced, photosynthetic performance. Here, we identified the SL-related TF JUNGBRUNNEN 1 as a potential regulator of genes involved in water deficit response and antioxidation processes. Overall, the hvd53a.f mutation enhances drought tolerance while maintaining low, stable photosynthesis, highlighting HvD53A as a central node connecting SL signalling to stress resilience.

独igolactones (SLs)是一类植物激素,在植物结构塑造中起着至关重要的作用,显著影响植物对恶劣环境条件的适应。在这项研究中,我们研究了大麦SL信号通路中SL抑制因子HvDWARF53A突变对植物生长和耐旱性的影响。我们将结果与先前描述的大麦突变体进行了比较,该突变体是高度分蘖和干旱敏感的,携带SL受体基因HvDWARF14突变。两个突变体,hvd14。D和hvd53a。F,表现出不同的表型,包括植株高度、分蘖和干旱敏感性的差异。在对照条件下,对hvd53a进行超微结构分析。F表现出较小的叶绿体和较少的粒堆,这可能是其光合效率降低的原因。相反,转录组学分析将hvd53a中差异表达的基因联系起来。F与抗氧化和应激反应有关,表明应对干旱的能力可能增强。进一步的分析揭示了SL信号通路和生物钟成分之间的紧密联系。其中,CIRCADIAN CLOCK ASSOCIATED 1作为一种潜在的sl应答转录因子(TF)出现,可能在调节分蘖中发挥关键作用。在干旱条件下,hvd53a。F表现出更强的耐受性,表现为更高的相对含水量、更少的叶绿素降解和稳定的光合性能(尽管有所下降)。在这里,我们确定了与sl相关的TF JUNGBRUNNEN 1是参与水分亏缺反应和抗氧化过程的基因的潜在调节因子。总的来说,hvd53a。f突变在维持低稳态光合作用的同时增强了耐旱性,表明HvD53A是连接SL信号与胁迫恢复能力的中心节点。
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引用次数: 0
NMOD: a multi-dimensional omics database for disease resistance research in Nicotiana. NMOD:烟草抗病研究的多维组学数据库。
IF 4 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2025-10-22 DOI: 10.1093/pcp/pcaf101
He Xu, Yanru Song, Bin Li, Kangkang Song, Xiaohua Zhang, Wenna Zheng, Bin Tan, Long Yang

High-throughput sequencing has generated extensive omics data for Nicotiana species, a key model genus in the Solanaceae family. However, fragmented data and limited cross-species integration in current databases hinder the identification of disease-resistant genes and germplasm innovation. To address these challenges, we developed Nicotiana multi-dimensional omics database (http://biodb.com.cn/NMOD/index.html). This database systematically integrates whole-genome data from 23 tobacco varieties, 168 transcriptome datasets, 777 million variation sites, and phenotypic-agronomic data from 146 global germplasm accessions. Nicotiana multi-omics database (NMOD) emphasizes the annotation of 29 disease-resistant gene families across 10 representative varieties, performs differential expression analysis on transcriptomes under different disease resistance treatments and integrates tools for genomic visualization (JBrowse), homology searching (BLAST), and functional enrichment analysis. In summary, NMOD provides extensive insights into tobacco genomics and genetics, holding promise to enhance future research on disease resistance mechanisms and molecular breeding in tobacco.

高通量测序产生了广泛的组学数据,烟叶属是茄科的一个关键模式属。然而,目前数据库中数据的碎片化和有限的跨物种整合阻碍了抗病基因的鉴定和种质资源的创新。为了应对这些挑战,我们开发了尼古丁多维组学数据库(http://biodb.com.cn/NMOD/index.html)。该数据库系统地整合了来自23个烟草品种的全基因组数据、168个转录组数据集、7.77亿个变异位点以及来自146个全球种质资源的表型农艺数据。NMOD重点标注了10个代表性品种的29个抗病基因家族,对不同抗病处理下的转录组进行差异表达分析,并集成了基因组可视化(JBrowse)、同源性搜索(BLAST)和功能富集分析工具。总之,NMOD为烟草基因组学和遗传学提供了广泛的见解,有望加强烟草抗病机制和分子育种的未来研究。
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引用次数: 0
期刊
Plant and Cell Physiology
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