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Plant and Algal Lipids: In All Their States and on All Scales. 植物和藻类脂质:各种状态和各种规模。
IF 3.9 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-06-27 DOI: 10.1093/pcp/pcae061
Yonghua Li-Beisson, Rebecca L Roston
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引用次数: 0
Characterization of Unique Eukaryotic Sphingolipids with Temperature-Dependent Δ8-Unsaturation from the Picoalga Ostreococcus tauri. 具有温度依赖性Δ8-不饱和度的独特真核鞘磷脂的特征,来自皮卡鱼 Ostreococcus Tauri。
IF 3.9 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-06-27 DOI: 10.1093/pcp/pcae007
Toshiki Ishikawa, Frédéric Domergue, Alberto Amato, Florence Corellou

Sphingolipids (SLs) are ubiquitous components of eukaryotic cell membranes and are found in some prokaryotic organisms and viruses. They are composed of a sphingoid backbone that may be acylated and glycosylated. Assembly of various sphingoid base, fatty acyl and glycosyl moieties results in highly diverse structures. The functional significance of variations in SL chemical diversity and abundance is still in the early stages of investigation. Among SL modifications, Δ8-desaturation of the sphingoid base occurs only in plants and fungi. In plants, SL Δ8-unsaturation is involved in cold hardiness. Our knowledge of the structure and functions of SLs in microalgae lags far behind that of animals, plants and fungi. Original SL structures have been reported from microalgae. However, functional studies are still missing. Ostreococcus tauri is a minimal microalga at the base of the green lineage and is therefore a key organism for understanding lipid evolution. In the present work, we achieved the detailed characterization of O. tauri SLs and unveiled unique glycosylceramides as sole complex SLs. The head groups are reminiscent of bacterial SLs, as they contain hexuronic acid residues and can be polyglycosylated. Ceramide backbones show a limited variety, and SL modification is restricted to Δ8-unsaturation. The Δ8-SL desaturase from O. tauri only produced E isomers. Expression of both Δ8-SL desaturase and Δ8-unsaturation of sphingolipids varied with temperature, with lower levels at 24°C than at 14°C. Overexpression of the Δ8-SL desaturase dramatically increases the level of Δ8 unsaturation at 24°C and is paralleled by a failure to increase cell size. Our work provides the first characterization of O. tauri SLs and functional evidence for the involvement of SL Δ8-unsaturation for temperature acclimation in microalgae, suggesting that this function is an ancestral feature in the green lineage.

鞘磷脂是真核生物细胞膜中无处不在的成分,也存在于一些原核生物和病毒中。它们由可能酰化和糖基化的鞘磷脂骨架组成。各种鞘氨醇基团、脂肪酰基和糖基的组合形成了高度多样化的结构。鞘脂化学多样性和丰度变化的功能意义仍处于早期研究阶段。在鞘磷脂的修饰中,鞘氨醇基的Δ8-脱饱和只出现在植物和真菌中。在植物中,鞘脂的Δ8-不饱和与耐寒性有关。我们对微藻中鞘磷脂结构和功能的了解远远落后于动物、植物和真菌。已有关于微藻中原始鞘脂结构的报道。然而,功能性研究仍然缺失。Ostreococus tauri 是一种处于绿系底部的微型藻类,因此是了解脂质进化的关键生物。在本研究中,我们对牛尾藻鞘脂进行了详细表征,并揭示了作为唯一复合鞘脂的独特糖基甘油三酯。其头部基团让人联想到细菌的鞘磷脂,因为它们含有六醛酸残基并可进行多糖化。神经酰胺骨架的种类有限,鞘磷脂的修饰仅限于∆8-不饱和状态。金牛星人的Δ8-鞘脂去饱和酶只产生 E-异构体。Δ8-刺桐脂脱饱和酶的表达量和Δ8-刺桐脂的不饱和度均随温度而变化,24°C时的表达量低于14°C时。过量表达Δ8-刺桐脂脱饱和酶会显著增加24°C时的Δ8不饱和程度,同时细胞体积也不会增大。我们的工作首次描述了金牛星鞘磷脂的特征,并提供了微藻类鞘磷脂Δ8-不饱和参与温度适应的功能证据,表明这一功能是绿色藻系的祖先特征。
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引用次数: 0
Post-translational Regulation of BRI1-EMS Suppressor 1 and Brassinazole-resistant 1. BRI1-EMS 抑制因子 1 和抗黄铜唑因子 1 的翻译后调控。
IF 4.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-06-19 DOI: 10.1093/pcp/pcae066
Juan Mao, Biaodi Shen, Wenxin Li, Linchuan Liu, Jianming Li

BRI1-EMS Suppressor 1 (BES1) and Brassinazole resistant 1 (BZR1) are two highly similar master transcription factors of the brassinosteroid (BR) signaling pathway that regulate a variety of plant growth and development processes as well as stress responses. Previous genetic and biochemical analyses have established a complex regulatory network to control the two transcription factors. This network includes coordination with other transcription factors and interactors, multiple post-translational modifications (PTMs), and differential subcellular localizations. In this review, we systematically detail the functions and regulatory mechanisms of various PTMs: phosphorylation/dephosphorylation, ubiquitination/deubiquitination, SUMOylation/deSUMOylation, oxidation/reduction, in regulating the subcellular localization, protein stability, and the transcriptional activity of BES1/BZR1. We also discuss the current knowledge about the BES1/BZR1-interactors mediating the dynamic nucleocytoplasmic shuttling of BES1 and BZR1.

BRI1-EMS 抑制因子 1(BES1)和抗芸苔素唑因子 1(BZR1)是芸苔素类固醇(BR)信号通路中两个高度相似的主转录因子,它们调控多种植物生长和发育过程以及胁迫响应。先前的遗传和生化分析建立了一个复杂的调控网络来控制这两个转录因子。该网络包括与其他转录因子和相互作用因子的协调、多种翻译后修饰(PTM)以及不同的亚细胞定位。在这篇综述中,我们系统地详细介绍了磷酸化/去磷酸化、泛素化/去泛素化、SUMOylation/deSUMOylation、氧化/还原等各种 PTM 在调控 BES1/BZR1 亚细胞定位、蛋白质稳定性和转录活性方面的功能和调控机制。我们还讨论了目前有关介导 BES1 和 BZR1 在核细胞质中动态穿梭的 BES1/BZR1 相互作用体的知识。
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引用次数: 0
Letter to the Editor: Removal of B800 Bacteriochlorophyll a from Light-Harvesting Complex 3 of the Purple Photosynthetic Bacterium Rhodoblastus acidophilus. 致编辑的信:从紫色光合细菌嗜酸乳杆菌的光收集复合体 3 中去除 B800 菌体叶绿素 a。
IF 3.9 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-06-11 DOI: 10.1093/pcp/pcae065
Yoshitaka Saga, Kohei Hamanishi, Shota Kawato
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引用次数: 0
Light Wavelength as a Contributory Factor of Environmental Fitness in the Cyanobacterial Circadian Clock. 光波长是蓝藻昼夜节律钟环境适应性的一个促成因素。
IF 4.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-30 DOI: 10.1093/pcp/pcae022
Naohiro Kawamoto, Shuji Nakanishi, Ginga Shimakawa

A circadian clock is an essential system that drives the 24-h expression rhythms for adaptation to day-night cycles. The molecular mechanism of the circadian clock has been extensively studied in cyanobacteria harboring the KaiC-based timing system. Nevertheless, our understanding of the physiological significance of the cyanobacterial circadian clock is still limited. In this study, we cultured wild-type Synechococcus elongatus PCC 7942 and circadian clock mutants in day-night cycles at different light qualities and found that the growth of the circadian clock mutants was specifically impaired during 12-h blue light/12-h dark (BD) cycles for the first time. The arrhythmic mutant kaiCAA was further analyzed by photosynthetic measurements. Compared with the wild type, the mutant exhibited decreases in the chlorophyll content, the ratio of photosystem I to II, net O2 evolution rate and efficiency of photosystem II photochemistry during BD cycles. These results indicate that the circadian clock is necessary for the growth and the maintenance of the optimum function of the photosynthetic apparatus in cyanobacteria under blue photoperiodic conditions.

昼夜节律钟是驱动 24 小时表达节律以适应昼夜循环的重要系统。昼夜节律钟的分子机制已在携带基于 KaiC 的定时系统的蓝藻中得到广泛研究。然而,我们对蓝藻昼夜节律钟生理意义的了解仍然有限。在这项研究中,我们在不同光质的昼夜循环中培养了野生型细长鞘藻 PCC 7942 和昼夜节律时钟突变体,并首次发现昼夜节律时钟突变体在 12 小时蓝光/12 小时黑暗循环(BD)中的生长特别受到影响。通过光合测量进一步分析了心律失常突变体 kaiCAA。与野生型相比,突变体在 BD 周期中的叶绿素含量、光系统 I 与 II 的比例、净 O2 进化率、光系统 II 光化学效率均有所下降。这些结果表明,昼夜节律对蓝藻在蓝色光周期条件下的生长和光合装置最佳功能的维持是必要的。
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引用次数: 0
DNA- and Selectable-Marker-Free Genome-Editing System Using Zygotes from Recalcitrant Maize Inbred B73. 利用难育玉米近交系 B73 的子代进行 DNA 和无选择标记基因组编辑的系统。
IF 4.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-30 DOI: 10.1093/pcp/pcae010
Hajime Yamada, Norio Kato, Masako Ichikawa, Keiko Mannen, Takatoshi Kiba, Yuriko Osakabe, Hitoshi Sakakibara, Minami Matsui, Takashi Okamoto

Genome-editing tools such as the clustered regularly interspaced short palindromic repeats/Cas9 (CRISPR/Cas9) system have become essential tools for increasing the efficiency and accuracy of plant breeding. Using such genome-editing tools on maize, one of the most important cereal crops of the world, will greatly benefit the agriculture and the mankind. Conventional genome-editing methods typically used for maize involve insertion of a Cas9-guide RNA expression cassette and a selectable marker in the genome DNA; however, using such methods, it is essential to eliminate the inserted DNA cassettes to avoid legislative concerns on gene-modified organisms. Another major hurdle for establishing an efficient and broadly applicable DNA-free genome-editing system for maize is presented by recalcitrant genotypes/cultivars, since cell/tissue culture and its subsequent regeneration into plantlets are crucial for producing transgenic and/or genome-edited maize. In this study, to establish a DNA-free genome-editing system for recalcitrant maize genotypes/cultivars, Cas9-gRNA ribonucleoproteins were directly delivered into zygotes isolated from the pollinated flowers of the maize-B73 cultivar. The zygotes successfully developed and were regenerated into genome-edited plantlets by co-culture with phytosulfokine, a peptide phytohormone. The method developed herein made it possible to obtain DNA- and selectable-marker-free genome-edited recalcitrant maize genotypes/cultivars with high efficiency. This method can advance the molecular breeding of maize and other important cereals, regardless of their recalcitrant characteristics.

基因组编辑工具,如簇状规则间隔短回文重复序列/Cas9(CRISPR/Cas9)系统,已成为提高植物育种效率和准确性的重要工具。玉米是世界上最重要的谷类作物之一,在玉米上使用这类基因组编辑工具将极大地造福于农业和人类。传统的基因组编辑方法通常用于玉米,包括在基因组 DNA 中插入 Cas9-guide RNA 表达盒和可选择标记。为玉米建立高效、广泛适用的无 DNA 基因组编辑系统的另一个主要障碍是难以克服的基因型/栽培品种,因为细胞/组织培养及其随后的小植株再生对于生产转基因和/或基因组编辑玉米至关重要。在本研究中,为了建立一种针对顽固玉米基因型/栽培品种的无 DNA 基因组编辑系统,Cas9-gRNA 核糖核蛋白(RNPs)被直接输送到从玉米-B73 栽培品种授粉花中分离出来的子实体中。通过与植物生长素(一种多肽植物激素)共同培养,子实体成功发育并再生为基因组编辑的小植株。本文所开发的方法可以高效率地获得无 DNA 和可选择标记的基因组编辑顽抗玉米基因型/栽培品种。无论玉米和其他重要谷物的抗逆特性如何,该方法都能推动它们的分子育种工作。
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引用次数: 0
Trans-Species Mobility of RNA Interference between Plants and Associated Organisms. 植物和相关生物之间 RNA 干扰的跨物种流动性。
IF 4.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-30 DOI: 10.1093/pcp/pcae012
Ya-Chi Nien, Allison Vanek, Michael J Axtell

Trans-species RNA interference (RNAi) occurs naturally when small RNAs (sRNAs) silence genes in species different from their origin. This phenomenon has been observed between plants and various organisms including fungi, animals and other plant species. Understanding the mechanisms used in natural cases of trans-species RNAi, such as sRNA processing and movement, will enable more effective development of crop protection methods using host-induced gene silencing (HIGS). Recent progress has been made in understanding the mechanisms of cell-to-cell and long-distance movement of sRNAs within individual plants. This increased understanding of endogenous plant sRNA movement may be translatable to trans-species sRNA movement. Here, we review diverse cases of natural trans-species RNAi focusing on current theories regarding intercellular and long-distance sRNA movement. We also touch on trans-species sRNA evolution, highlighting its research potential and its role in improving the efficacy of HIGS.

当小 RNA(sRNA)使不同物种的基因沉默时,跨物种 RNA 干扰就自然发生了。这种现象已在植物与真菌、动物和其他植物物种等各种生物之间观察到。了解跨物种 RNAi 的自然机制,如 sRNA 的处理和移动,将有助于更有效地开发使用宿主诱导基因沉默(HIGS)的作物保护方法。最近,人们在了解单株植物内 sRNA 在细胞间和远距离移动的机制方面取得了进展。对植物内源 sRNA 运动的进一步了解可能会转化为跨物种 sRNA 运动。在此,我们回顾了自然界跨物种 RNAi 的各种案例,重点是当前有关细胞间和远距离 sRNA 运动的理论。我们还将探讨跨物种 sRNA 的进化,强调其研究潜力及其在提高 HIGS 效能方面的作用。
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引用次数: 0
Divergent Protein Redox Dynamics and Their Relationship with Electron Transport Efficiency during Photosynthesis Induction. 光合作用诱导过程中不同蛋白质的氧化还原动力学及其与电子传递效率的关系
IF 4.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-30 DOI: 10.1093/pcp/pcae013
Keisuke Yoshida, Toru Hisabori

Various chloroplast proteins are activated/deactivated during the light/dark cycle via the redox regulation system. Although the photosynthetic electron transport chain provides reducing power to redox-sensitive proteins via the ferredoxin (Fd)/thioredoxin (Trx) pathway for their enzymatic activity control, how the redox states of individual proteins are linked to electron transport efficiency remains uncharacterized. Here we addressed this subject with a focus on the photosynthetic induction phase. We used Arabidopsis plants, in which the amount of Fd-Trx reductase (FTR), a core component in the Fd/Trx pathway, was genetically altered. Several chloroplast proteins showed different redox shift responses toward low- and high-light treatments. The light-dependent reduction of Calvin-Benson cycle enzymes fructose 1,6-bisphosphatase (FBPase) and sedoheptulose 1,7-bisphosphatase (SBPase) was partially impaired in the FTR-knockdown ftrb mutant. Simultaneous analyses of chlorophyll fluorescence and P700 absorbance change indicated that the induction of the electron transport reactions was delayed in the ftrb mutant. FTR overexpression also mildly affected the reduction patterns of FBPase and SBPase under high-light conditions, which were accompanied by the modification of electron transport properties. Accordingly, the redox states of FBPase and SBPase were linearly correlated with electron transport rates. In contrast, ATP synthase was highly reduced even when electron transport reactions were not fully induced. Furthermore, the redox response of proton gradient regulation 5-like photosynthetic phenotype1 (PGRL1; a protein involved in cyclic electron transport) did not correlate with electron transport rates. Our results provide insights into the working dynamics of the redox regulation system and their differential associations with photosynthetic electron transport efficiency.

在光/暗周期中,各种叶绿体蛋白质通过氧化还原调节系统被激活/失活。虽然光合电子传递链通过铁氧化还原酶(Fd)/硫氧化还原酶(Trx)途径为氧化还原敏感蛋白提供还原能力,以控制其酶活性,但单个蛋白的氧化还原状态如何与电子传递效率相关联仍未得到表征。在此,我们以光合诱导阶段为重点,探讨了这一问题。我们使用了拟南芥植株,在这种植株中,Fd/Trx 途径的核心成分 Fd-Trx 还原酶(FTR)的数量发生了基因改变。几种叶绿体蛋白对弱光和强光处理表现出不同的氧化还原反应。在FTR敲除的ftrb突变体中,卡尔文-本森循环酶果糖1,6-二磷酸酶(FBPase)和色素1,7-二磷酸酶(SBPase)的光依赖性还原部分受损。叶绿素荧光和 P700 吸光度变化的同时分析表明,ffrb 突变体中电子传递反应的诱导延迟了。FTR 的过表达也轻微影响了强光条件下 FBPase 和 SBPase 的还原模式,同时改变了电子传递特性。因此,FBPase 和 SBPase 的氧化还原状态与电子传输速率呈线性相关。相比之下,即使电子传递反应没有被完全诱导,ATP合成酶也会高度还原。此外,质子梯度调节5-类光合表型1(PGRL1,一种参与循环电子传递的蛋白质)的氧化还原反应与电子传递速率并不相关。我们的研究结果有助于深入了解氧化还原调节系统的工作动态及其与光合电子传输效率的不同关系。
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引用次数: 0
Long-Term Consequences of PTI Activation and Its Manipulation by Root-Associated Microbiota. 根相关微生物群对 PTI 激活及其操纵的长期影响。
IF 4.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-30 DOI: 10.1093/pcp/pcae033
Ryohei Thomas Nakano, Tomohisa Shimasaki

In nature, plants are constantly colonized by a massive diversity of microbes engaged in mutualistic, pathogenic or commensal relationships with the host. Molecular patterns present in these microbes activate pattern-triggered immunity (PTI), which detects microbes in the apoplast or at the tissue surface. Whether and how PTI distinguishes among soil-borne pathogens, opportunistic pathogens, and commensal microbes within the soil microbiota remains unclear. PTI is a multimodal series of molecular events initiated by pattern perception, such as Ca2+ influx, reactive oxygen burst, and extensive transcriptional and metabolic reprogramming. These short-term responses may manifest within minutes to hours, while the long-term consequences of chronic PTI activation persist for days to weeks. Chronic activation of PTI is detrimental to plant growth, so plants need to coordinate growth and defense depending on the surrounding biotic and abiotic environments. Recent studies have demonstrated that root-associated commensal microbes can activate or suppress immune responses to variable extents, clearly pointing to the role of PTI in root-microbiota interactions. However, the molecular mechanisms by which root commensals interfere with root immunity and root immunity modulates microbial behavior remain largely elusive. Here, with a focus on the difference between short-term and long-term PTI responses, we summarize what is known about microbial interference with host PTI, especially in the context of root microbiota. We emphasize some missing pieces that remain to be characterized to promote the ultimate understanding of the role of plant immunity in root-microbiota interactions.

在自然界中,植物不断被大量微生物定殖,这些微生物与宿主之间存在着互生、致病或共生关系。这些微生物中存在的分子模式会激活模式触发免疫(PTI),从而检测细胞外质或组织表面的微生物。目前还不清楚 PTI 是否以及如何区分土壤微生物群中的土传病原体、机会性病原体和共生微生物。PTI 是由模式感知引发的一系列多模式分子事件,如 Ca2+ 流入、活性氧爆发以及广泛的转录和代谢重编程。这些短期反应可能在数分钟至数小时内显现,而长期激活 PTI 的长期后果则会持续数天至数周。PTI 的长期激活不利于植物生长,因此植物需要根据周围的生物和非生物环境来协调生长和防御。最近的研究表明,根系相关共生微生物可在不同程度上激活或抑制免疫反应,这清楚地表明了 PTI 在根系与微生物群相互作用中的作用。然而,根系共生微生物干扰根系免疫以及根系免疫调节微生物行为的分子机制在很大程度上仍然难以捉摸。在此,我们以短期和长期 PTI 反应之间的差异为重点,总结了微生物干扰宿主 PTI 的已知情况,尤其是在根系微生物群的背景下。我们强调了一些尚待定性的缺失部分,以促进对植物免疫在根系微生物群相互作用中的作用的最终理解。
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引用次数: 0
High Myristic Acid in Glycerolipids Enhances the Repair of Photodamaged Photosystem II under Strong Light. 甘油三酯中的高肉豆蔻酸可增强强光下光损光系统 II 的修复能力。
IF 4.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-30 DOI: 10.1093/pcp/pcae021
Kazuki Kurima, Haruhiko Jimbo, Takashi Fujihara, Masakazu Saito, Toshiki Ishikawa, Hajime Wada

Cyanobacteria inhabit areas with a broad range of light, temperature and nutrient conditions. The robustness of cyanobacterial cells, which can survive under different conditions, may depend on the resilience of photosynthetic activity. Cyanothece sp. PCC 8801 (Cyanothece), a freshwater cyanobacterium isolated from a Taiwanese rice field, had a higher repair activity of photodamaged photosystem II (PSII) under intense light than Synechocystis sp. PCC 6803 (Synechocystis), another freshwater cyanobacterium. Cyanothece contains myristic acid (14:0) as the major fatty acid at the sn-2 position of the glycerolipids. To investigate the role of 14:0 in the repair of photodamaged PSII, we used a Synechocystis transformant expressing a T-1274 encoding a lysophosphatidic acid acyltransferase (LPAAT) from Cyanothece. The wild-type and transformant cells contained 0.2 and 20.1 mol% of 14:0 in glycerolipids, respectively. The higher content of 14:0 in the transformants increased the fluidity of the thylakoid membrane. In the transformants, PSII repair was accelerated due to an enhancement in the de novo synthesis of D1 protein, and the production of singlet oxygen (1O2), which inhibited protein synthesis, was suppressed. The high content of 14:0 increased transfer of light energy received by phycobilisomes to PSI and CP47 in PSII and the content of carotenoids. These results indicated that an increase in 14:0 reduced 1O2 formation and enhanced PSII repair. The higher content of 14:0 in the glycerolipids may be required as a survival strategy for Cyanothece inhabiting a rice field under direct sunlight.

蓝藻栖息在光照、温度和营养条件差异很大的区域。蓝藻细胞能在不同条件下存活,其强健程度可能取决于光合作用的恢复能力。Cyanothece sp.PCC 8801(Cyanothece)是一种从台湾稻田中分离出来的淡水蓝藻,与另一种淡水蓝藻 Synechocystis sp.蓝藻的甘油脂 Sn-2 位含有肉豆蔻酸(14:0)作为主要脂肪酸。为了研究 14:0 在修复光损伤的 PSII 中的作用,我们使用了一种表达来自蓝藻的溶血磷脂酸酰基转移酶(LPAAT)编码 T-1274 的 Synechocystis 转化体。野生型细胞和转化型细胞的甘油酯中 14:0 的含量分别为 0.2 摩尔%和 20.1 摩尔%。转化子中较高的 14:0 含量增加了类色球膜的流动性。在转化体中,由于 D1 蛋白的从头合成增强,PSII 修复加快,抑制蛋白质合成的单线态氧(1O2)的产生受到抑制。14:0 的高含量增加了藻体接收到的光能向 PSII 中的 PSI 和 CP47 的转移,也增加了类胡萝卜素的含量。这些结果表明,14:0 的增加减少了 1O2 的形成,增强了 PSII 的修复能力。甘油脂中较高的 14:0 含量可能是在阳光直射下栖息在稻田中的蓝藻的一种生存策略。
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引用次数: 0
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Plant and Cell Physiology
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