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Harnessing Virus Vectors for Heritable Tissue Culture-Free Gene Editing. 利用病毒载体进行无遗传组织培养的基因编辑。
IF 3.9 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-12-06 DOI: 10.1093/pcp/pcae131
Hiroki Tsutsui
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引用次数: 0
The Role of Puerarin in Chronic Wounds: A Review of its Mechanism of Action and Potential Novel Applications. 葛根素在慢性伤口中的作用:葛根素在慢性伤口中的作用:作用机制与潜在新应用综述。
IF 3.9 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-12-01 Epub Date: 2022-03-11 DOI: 10.1177/15347346221086687
Noor Anvery, Abdulhafez Selim, Amor Khachemoune

Chronic wounds have a high disease burden and significantly influence patient quality of life. The development of chronic wounds is multifactorial and thus adequate management and care is often difficult to achieve. Chronic diseases, malnutrition, smoking, immune dysregulation, and age contribute to chronic wound development. Treatment options include adequately addressing underlying conditions and selecting appropriate topical preparations which enhance and promote healing of different wounds based on an understanding of wound healing pathophysiology. Puerarin, a naturally occurring flavinoid, may offer therapeutic potential for addressing etiologies as well as managing wound beds due to its anti-inflammatory, anti-oxidative, pro-angiogenic, and anesthetic properties.

慢性伤口的疾病负担很重,对患者的生活质量影响很大。慢性伤口的形成是由多种因素造成的,因此通常很难实现充分的管理和护理。慢性疾病、营养不良、吸烟、免疫失调和年龄都是导致慢性伤口形成的原因。治疗方案包括充分解决潜在的问题,并根据对伤口愈合病理生理学的了解,选择适当的外用制剂,以增强和促进不同伤口的愈合。葛根素是一种天然黄酮类化合物,具有抗炎、抗氧化、促进血管生成和麻醉的特性,可为解决病因和管理伤口床提供治疗潜力。
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引用次数: 0
Are complex traits underpinned by polygenic molecular traits? A reflection on the complexity of gene expression. 复杂性状是否由多基因分子性状支撑?对基因表达复杂性的思考。
IF 3.9 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-29 DOI: 10.1093/pcp/pcae140
Mohsen Hajheideri, Shamil Sunyaev, Juliette de Meaux
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引用次数: 0
Substrate specificities in the chlorophyll catabolism of aquatic protists determined with in vivo phagocytotic assays. 通过体内吞噬试验确定水生原生动物叶绿素分解代谢的底物特异性。
IF 3.9 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-25 DOI: 10.1093/pcp/pcae136
Yuichiro Kashiyama, Shizuka Miichi, Hiroki Imanishi, Moe Maruyama, Shin Ogasawara, Hitoshi Tamiaki

Chlorophylls (Chls) are ubiquitous photosynthetic pigments with inherent potential to generate cytotoxic reactive oxygen species. Therefore, all phototrophs and any phagotrophs that attempt to digest phototrophic cells have presumably developed mechanisms to mitigate this phototoxicity. In aquatic environments, the Chls produced by the dominant producers, microalgae, are catabolized into nonphototoxic pigments, cyclopheophorbide enols (CPEs), either by microalga-feeding protists or autonomously, particularly by those carrying secondary chloroplasts during the dismantling of their chloroplasts. However, the biochemistry underpinning CPE-accumulating Chl catabolism (CACC) remains largely unexamined. To characterize the reactions in the transformation pathway and identify the pivotal enzyme for the formation of the seven-membered ring distinctive to CPEs, we conducted qualitative in vivo experiments using hemisynthetically prepared Chl derivatives in the cells of a euglenozoan algivorous (phycophagic) protist, Peranema trichophorum NIES-4660. We supplied polymer beads coated with Chl-b derivatives with their food cells, a unicellular red alga, Cyanidioschyzon merolae, which exclusively contains Chl-a. After administration of Chl-b or its free base with the beads, we detected a CPE derivative with a formyl group at the C7 position (cyclopheophorbide b-enol; cPPB-bE), clearly derived from the appended derivatives, and not from the Chl-a of the alga. In contrast, cPPB-bE was not detected when zinc- and copper-metalated Chls and C132-demethoxycarbonylated Chl-b were added, although the latter resulted in the generation of its demetalated free-base form. These results indicate that (1) pheophytins are the actual substrates of the cyclization enzyme and (2) cyclization proceeds after the enzymatic dechelation of the central magnesium of natural Chls.

叶绿素(Chls)是无处不在的光合色素,具有产生细胞毒性活性氧的内在潜力。因此,所有趋光性生物和试图消化趋光性细胞的吞噬性生物都可能已经形成了减轻这种光毒性的机制。在水生环境中,主要生产者--微藻产生的 Chls 会被以微藻为食的原生生物或自主分解成无光毒的色素--环己基烯醇(CPEs),特别是那些携带次生叶绿体的原生生物在分解叶绿体时。然而,CPE-积累型叶绿体分解代谢(CACC)的生物化学基础在很大程度上仍未得到研究。为了描述转化途径中的反应并确定形成 CPE 特有的七元环的关键酶,我们在食藻原生动物 Peranema trichophorum NIES-4660 的细胞中使用半合成制备的 Chl 衍生物进行了定性体内实验。我们为涂有 Chl-b 衍生物的聚合物珠提供了食物细胞--一种单细胞红藻 Cyanidioschyzon merolae,这种红藻只含有 Chl-a。在将 Chl-b 或其游离碱与珠子一起施用后,我们检测到了一种在 C7 位带有甲酰基的 CPE 衍生物(cyclopheophorbide b-enol;cPPB-bE),这种衍生物显然来自附加衍生物,而不是藻类的 Chl-a。相反,在加入锌和铜金属化 Chls 以及 C132-去甲氧基羰基化 Chl-b 时,cPPB-bE 未被检测到,尽管后者会产生其去金属化的游离碱形式。这些结果表明:(1) 叶绿素是环化酶的实际底物;(2) 环化是在天然 Chls 的中心镁被酶解后进行的。
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引用次数: 0
Brassinosteroids in Focus. 聚焦芸苔素类固醇
IF 3.9 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-13 DOI: 10.1093/pcp/pcae112
Brigitte Poppenberger, Eugenia Russinova, Sigal Savaldi-Goldstein
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引用次数: 0
Ozone Priming Enhanced Low Temperature Tolerance of Wheat (Triticum Aestivum L.) based on Physiological, Biochemical and Transcriptional Analyses. 基于生理、生化和转录分析的臭氧引物增强了小麦(Triticum aestivum L.)的低温耐受性。
IF 3.9 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-13 DOI: 10.1093/pcp/pcae087
Bing Dai, Hongyan Wang, Weiqiang Li, Peng Zhang, Tianhao Liu, Xiangnan Li

Low temperature significantly inhibits plant growth in wheat (Triticum aestivum L.), prompting the exploration of effective strategies to mitigate low temperature stress. Several priming methods enhance low temperature stress tolerance; however, the role of ozone priming remains unclear in wheat. Here we found ozone priming alleviated low temperature stress in wheat. Transcriptome analysis showed that ozone priming positively modulated the 'photosynthesis-antenna proteins' pathway in wheat under low temperature. This was confirmed by the results of ozone-primed plants, which had higher trapped energy flux and electron transport flux per reaction, and less damage to chloroplasts than non-primed plants under low temperature. Ozone priming also mitigated the overstimulation of glutathione metabolism and induced the accumulation of total ascorbic acid and glutathione, as well as maintaining redox homeostasis in wheat under low temperature. Moreover, gene expressions and enzyme activities in glycolysis pathways were upregulated in ozone priming compared with non-priming after the low temperature stress. Furthermore, exogenous antibiotics significantly increased low temperature tolerance, which further proved that the inhibition of ribosome biogenesis by ozone priming was involved in low temperature tolerance in wheat. In conclusion, ozone priming enhanced wheat's low temperature tolerance through promoting light-harvesting capacity, redox homeostasis and carbohydrate metabolism, as well as inhibiting ribosome biogenesis.

低温严重抑制了小麦(Triticum aestivum L.)的生长,促使人们探索有效的策略来缓解低温胁迫。有几种引导方法能增强小麦的低温胁迫耐受性,但臭氧引导在小麦中的作用仍不清楚。在这里,我们发现臭氧引物可减轻小麦的低温胁迫。转录组分析表明,臭氧引物对小麦在低温条件下的 "光合作用-天线蛋白 "通路有积极的调节作用。结果证实,在低温条件下,臭氧引发的植株比未引发的植株具有更高的截留能量通量和每次反应的电子传递通量,叶绿体的损伤也更小。臭氧诱导还能缓解谷胱甘肽代谢的过度刺激,诱导抗坏血酸和谷胱甘肽总量的积累,维持小麦在低温下的氧化还原平衡。此外,在低温胁迫后,臭氧引物与非引物相比,糖酵解途径中的基因表达和酶活性上调。此外,外源抗生素能显著提高小麦的耐低温能力,这进一步证明了臭氧引物对核糖体生物发生的抑制参与了小麦的耐低温能力。总之,臭氧引物通过促进光收获能力、氧化还原平衡和碳水化合物代谢,以及抑制核糖体的生物发生,增强了小麦的耐低温能力。
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引用次数: 0
Post-translational Regulation of BRI1-EMS Suppressor 1 and Brassinazole-Resistant 1. BRI1-EMS 抑制因子 1 和抗黄铜唑因子 1 的翻译后调控。
IF 3.9 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-13 DOI: 10.1093/pcp/pcae066
Juan Mao, Biaodi Shen, Wenxin Li, Linchuan Liu, Jianming Li

Brassinosteroid-insensitive 1 (BRI1)-EMS suppressor 1 (BES1) and Brassinazole-resistant 1 (BZR1) are two highly similar master transcription factors of the brassinosteroid (BR) signaling pathway that regulates a variety of plant growth and development processes as well as stress responses. Previous genetic and biochemical analyses have established a complex regulatory network to control the two transcription factors. This network includes coordination with other transcription factors and interactors, multiple post-translational modifications (PTMs) and differential subcellular localizations. In this review, we systematically detail the functions and regulatory mechanisms of various PTMs: phosphorylation/dephosphorylation, ubiquitination/deubiquitination, SUMOylation/deSUMOylation and oxidation/reduction, in regulating the subcellular localization, protein stability and the transcriptional activity of BES1/BZR1. We also discuss the current knowledge about the BES1/BZR1 interactors mediating the dynamic nucleocytoplasmic shuttling of BES1 and BZR1.

BRI1-EMS 抑制因子 1(BES1)和抗芸苔素唑因子 1(BZR1)是芸苔素类固醇(BR)信号通路中两个高度相似的主转录因子,它们调控多种植物生长和发育过程以及胁迫响应。先前的遗传和生化分析建立了一个复杂的调控网络来控制这两个转录因子。该网络包括与其他转录因子和相互作用因子的协调、多种翻译后修饰(PTM)以及不同的亚细胞定位。在这篇综述中,我们系统地详细介绍了磷酸化/去磷酸化、泛素化/去泛素化、SUMOylation/deSUMOylation、氧化/还原等各种 PTM 在调控 BES1/BZR1 亚细胞定位、蛋白质稳定性和转录活性方面的功能和调控机制。我们还讨论了目前有关介导 BES1 和 BZR1 在核细胞质中动态穿梭的 BES1/BZR1 相互作用体的知识。
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引用次数: 0
Phytochrome C and Low Temperature Promote the Protein Accumulation and Red-Light Signaling of Phytochrome D. 植物色素 C 和低温促进植物色素 D 的蛋白质积累和红光信号传递
IF 3.9 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-13 DOI: 10.1093/pcp/pcae089
Csaba Péter, Éva Ádám, Cornelia Klose, Gábor Grézal, Anita Hajdu, Gábor Steinbach, László Kozma-Bognár, Dániel Silhavy, Ferenc Nagy, András Viczián

Light affects almost every aspect of plant development. It is perceived by photoreceptors, among which phytochromes (PHY) are responsible for monitoring the red and far-red spectrum. Arabidopsis thaliana possesses five phytochrome genes (phyA-phyE). Whereas functions of phyA and phyB are extensively studied, our knowledge of other phytochromes is still rudimentary. To analyze phyD function, we expressed it at high levels in different phytochrome-deficient genetic backgrounds. Overexpressed phyD-YFP can govern effective light signaling but only at low temperatures and in cooperation with functional phyC. Under these conditions, phyD-YFP accumulates to high levels, and opposite to phyB, this pool is stable in light. By comparing the photoconvertible phyD-YFP and phyB levels and their signaling in continuous and pulsed irradiation, we showed that phyD-YFP is a less efficient photoreceptor than phyB. This conclusion is supported by the facts that only a part of the phyD-YFP pool is photoconvertible and that thermal reversion of phyD-YFP is faster than that of phyB. Our data suggest that the temperature-dependent function of phyD is based on the amount of phyD protein and not on its Pfr stability, as described for phyB. We also found that phyD-YFP and phyB-GFP are associated with strongly overlapping genomic locations and are able to mediate similar changes in gene expression; however, the efficiency of phyD-YFP is lower. Based on these data, we propose that under certain conditions, synergistic interaction of phyD and phyC can substitute phyB function in seedlings and in adult plants and thus increases the ability of plants to respond more flexibly to environmental changes.

光几乎影响植物生长的方方面面。光由光敏感受器感知,其中植物色素(PHY)负责监测红光和远红外光谱。拟南芥有五个植物色素基因(phyA-E)。虽然 phyA 和 phyB 的功能已被广泛研究,但我们对其他植物色素的了解还很有限。为了分析 phyD 的功能,我们在不同的植物色素缺陷基因背景中高水平表达了 phyD。过量表达的 phyD-YFP 可以有效地控制光信号转导,但只能在低温条件下与功能性 phyC 配合使用。在这些条件下,phyD-YFP 会积累到很高的水平,而且与 phyB 相反,这个池在光照下是稳定的。通过比较phyD-YFP和phyB在连续和脉冲辐照下的光转换水平及其信号传导,我们发现phyD-YFP的光感受器效率低于phyB。支持这一结论的事实是,只有部分 phyD-YFP 池可进行光转换,而且 phyD-YFP 的热还原速度比 phyB 快。我们的数据表明,phyD 与温度相关的功能是基于 phyD 蛋白的数量,而不是像 phyB 所描述的那样基于其 Pfr 的稳定性。我们还发现,phyD-YFP 和 phyB-GFP 与基因组位置高度重叠,并介导了类似的基因表达变化,但 phyD-YFP 的效率较低。基于这些数据,我们认为在某些条件下,phyD 和 phyC 的协同作用可以替代 phyB 在幼苗和成株中的功能,从而提高植物更灵活地应对环境变化的能力。
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引用次数: 0
Bona Fide Plant Steroid Receptors are Innovated in Seed Plants and Angiosperms through Successive Whole-Genome Duplication Events. 标题:真正的植物类固醇受体通过连续的全基因组复制事件在种子植物和被子植物中得到创新
IF 3.9 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-13 DOI: 10.1093/pcp/pcae054
Jing Liu, Qiang Wei, Zhen Zhao, Fanqi Qiang, Guishuang Li, Guang Wu

Whole-genome duplication (WGD) events are widespread in plants and animals, thus their long-term evolutionary contribution has long been speculated, yet a specific contribution is difficult to verify. Here, we show that ɛ-WGD and ζ-WGD contribute to the origin and evolution of bona fide brassinosteroid (BR) signaling through the innovation of active BR biosynthetic enzymes and active BR receptors from their respective ancestors. We found that BR receptors BRI1 (BR INSENSITIVE 1) and BRL1/3 (BRI1-LIKES 1/3) derived by ɛ-WGD and ζ-WGD, which occurred in the common ancestor of angiosperms and seed plants, respectively, while orphan BR receptor BRL2 first appeared in stomatophytes. Additionally, CYP85A enzymes synthesizing the bioactive BRs derived from a common ancestor of seed plants, while its sister enzymes CYP90 synthesizing BR precursors presented in all land plants, implying possible ligand-receptor coevolution. Consistently, the island domains (IDs) responsible for BR perception in BR receptors were most divergent among different receptor branches, supporting ligand-driven evolution. As a result, BRI1 was the most diversified BR receptor in angiosperms. Importantly, relative to the BR biosynthetic DET2 gene presented in all land plants, BRL2, BRL1/3 and BRI1 had high expression in vascular plants ferns, gymnosperms and angiosperms, respectively. Notably, BRI1 is the most diversified BR receptor with the most abundant expression in angiosperms, suggesting potential positive selection. Therefore, WGDs initiate a neofunctionalization process diverged by ligand-perception and transcriptional expression, which might optimize both BR biosynthetic enzymes and BR receptors, likely contributing to the evolution of land plants, especially seed plants and angiosperms.

全基因组复制(WGD)事件在植物和动物中广泛存在,因此人们长期以来一直在推测它们对进化的贡献,但具体的贡献却难以验证。在这里,我们发现ɛ-WGD和ζ-WGD通过从它们各自的祖先中创新出活性BR生物合成酶和活性BR受体,促进了真正的黄铜类固醇(BR)信号的起源和进化。我们发现,BR受体BRI1(BR不敏感1)和BRL1/3(BRI1-likes 1/3)由ɛ-WGD和ζ-WGD衍生而来,它们分别出现在被子植物和种子植物的共同祖先中,而孤儿BR受体BRL2最早出现在气生植物中。此外,合成生物活性 BR 的 CYP85A 酶源自种子植物的共同祖先,而合成 BR 前体的姊妹酶 CYP90 则出现在所有陆生植物中,这意味着配体与受体可能共同进化。一致的是,BR受体中负责BR感知的岛状结构域(IDs)在不同受体分支中的差异最大,支持配体驱动的进化。因此,BRI1 是被子植物中最多样化的 BR 受体。重要的是,相对于所有陆生植物中都存在的 BR 生物合成 DET2 基因,BRL2、BRL1/3 和 BRI1 分别在维管植物蕨类、裸子植物和被子植物中具有较高的表达量。值得注意的是,BRI1 是最多样化的 BR 受体,在被子植物中的表达量最高,这表明可能存在正选择。因此,WGDs启动了一个由配体感知和转录表达分化的新功能化过程,这可能会优化BR生物合成酶和BR受体,从而可能促进陆生植物,尤其是种子植物和被子植物的进化。
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引用次数: 0
Mechanistic Insights into the Function of 14-3-3 Proteins as Negative Regulators of Brassinosteroid Signaling in Arabidopsis. 拟南芥中 14-3-3 蛋白作为黄铜类固醇信号转导负调控因子的功能机理研究。
IF 3.9 2区 生物学 Q2 CELL BIOLOGY Pub Date : 2024-11-13 DOI: 10.1093/pcp/pcae056
Elsa Obergfell, Ulrich Hohmann, Andrea Moretti, Houming Chen, Michael Hothorn

Brassinosteroids (BRs) are vital plant steroid hormones sensed at the cell surface by a membrane signaling complex comprising the receptor kinase BRI1 and a SERK family co-receptor kinase. Activation of this complex lead to dissociation of the inhibitor protein BKI1 from the receptor and to differential phosphorylation of BZR1/BES1 transcription factors by the glycogen synthase kinase 3 protein BIN2. Many phosphoproteins of the BR signaling pathway, including BRI1, SERKs, BKI1 and BZR1/BES1 can associate with 14-3-3 proteins. In this study, we use quantitative ligand binding assays to define the minimal 14-3-3 binding sites in the N-terminal lobe of the BRI1 kinase domain, in BKI1, and in BZR1 from Arabidopsis thaliana. All three motifs require to be phosphorylated to specifically bind 14-3-3s with mid- to low-micromolar affinity. BR signaling components display minimal isoform preference within the 14-3-3 non-ε subgroup. 14-3-3λ and 14-3-3 ω isoform complex crystal structures reveal that BKI1 and BZR1 bind as canonical type II 14-3-3 linear motifs. Disruption of key amino acids in the phosphopeptide binding site through mutation impairs the interaction of 14-3-3λ with all three linear motifs. Notably, quadruple loss-of-function mutants from the non-ε group exhibit gain-of-function BR signaling phenotypes, suggesting a role for 14-3-3 proteins as overall negative regulators of the BR pathway. Collectively, our work provides further mechanistic and genetic evidence for the regulatory role of 14-3-3 proteins at various stages of the BR signaling cascade.

芸苔素甾类激素(BRs)是一种重要的植物类固醇激素,由受体激酶 BRI1 和 SERK 家族共受体激酶组成的膜信号复合体在细胞表面感知。激活该复合体会导致抑制蛋白 BKI1 与受体分离,并导致糖原合酶激酶 3 蛋白 BIN2 对 BZR1/BES1 转录因子进行不同程度的磷酸化。BR 信号通路的许多磷酸化蛋白,包括 BRI1、SERKs、BKI1 和 BZR1/BES1 都能与 14-3-3 蛋白结合。在这项研究中,我们利用定量配体结合试验确定了拟南芥中 BRI1 激酶结构域 N 端叶、BKI1 和 BZR1 中的最小 14-3-3 结合位点。这三个基团都需要磷酸化,才能以中至低微摩尔的亲和力特异性地结合 14-3-3。在 14-3-3 非ε亚群中,BR 信号转导成分显示出最小的同工酶偏好。14-3-3λ 和 14-3-3ω 异构体复合物晶体结构显示,BKI1 和 BZR1 与典型的 II 型 14-3-3 线性基团结合。通过突变破坏磷酸肽结合位点的关键氨基酸会影响 14-3-3λ 与所有三个线性基团的相互作用。值得注意的是,非ε组的四重功能缺失突变体表现出功能增益的黄铜类固醇信号转导表型,这表明 14-3-3 蛋白在 BR 通路中扮演着整体负调控因子的角色。总之,我们的工作为 14-3-3 蛋白在黄铜素类固醇信号级联各阶段的调控作用提供了进一步的机理和遗传学证据。
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引用次数: 0
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Plant and Cell Physiology
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