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PARP1 suppression by α7 nAChR activation attenuated α-synuclein-induced neurotoxicity in parkinson's disease. α7 nAChR激活抑制PARP1可减弱α-突触核蛋白诱导的帕金森病神经毒性。
IF 21.1 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-24 DOI: 10.1093/procel/pwag004
Xiaoxi Ren,Dandan Guan,Fenqin Xue,Feilong Zhang,Jing Sun,Yan Zheng,Haixia Huang,Zhi-Qing David Xu,Jianliang Zhang,Wei Wang,Chen Zhang
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引用次数: 0
Multi-omics Analysis Reveals Comprehensive Aberrant Protein and Phosphorylation Characteristics in Breast Cancer and Paired Metastatic Lymph Nodes. 多组学分析揭示了乳腺癌和配对转移淋巴结的综合异常蛋白和磷酸化特征。
IF 21.1 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-12 DOI: 10.1093/procel/pwag002
Linhui Zhai,Cui-Cui Liu,Lei Zhao,Le-Wei Zheng,Chengyu Chu,Hu Hong,Yu-Wen Cai,Lie Chen,Yi-Ming Liu,Yiou Wang,Wensi Zhao,Yuqi Huang,Shiyu Duan,Zhi-Ming Shao,Yiting Jin,Minjia Tan,Ke-Da Yu
Breast cancer is the most frequently diagnosed cancer, with metastasis accounting for the majority of cancer-related deaths. The mechanisms of early-stage breast cancer metastasis to regional immune sites like lymph nodes remain elusive. Here, we performed an in-depth proteomic and phosphoproteomic analysis of a substantial series of breast cancer samples, alongside genomic and transcriptomic evaluations. This cohort encompasses 195 specimens: 65 primary breast tumors, their corresponding normal tissues, and metastatic axillary lymph nodes. We offer an overview of the molecular alterations at the transcriptomic, proteomic, and phosphoproteomic levels during lymph node metastasis. Notably, the findings indicate that regional lymph node metastasis is primarily influenced by proteomic and phosphoproteomic alterations, rather than genomic or transcriptomic changes. We found the ANGPTL4 and HMGB1 could serve as the biomarker of lymph node metastasis. Data analysis and cell experiments involving silencing of the alternative splicing factor HNRNPU demonstrated that alternative splicing plays a significant role in modulating protein expression, phosphorylation profiles and cell proliferation. The key phosphorylation sites, including MARCKSL1-S104 and FKBP15-S320, as well as the upstream kinase PRKCB, were identified as playing crucial roles in breast cancer lymph node metastasis. Targeted intervention of the kinase PRKCB resulted in effectively suppressing the proliferation and metastasis of breast cancer tumor cells. Immune profiling analysis and experimental validation of breast cancer cell cocultured with CD8+ T cell reveals correlations between phosphorylation of MARCKSL1-S104 and FKBP15-S320 with immune checkpoint PD-L1 expression, and their impact on tumor cell apoptosis, suggesting a potential mechanism of immune evasion in metastasis. This study systematically characterizes the molecular landscape and features of primary breast tumors and their matched metastatic lymph nodes. These insights enhance our understanding of early-stage breast cancer metastasis and may pave the way for improved diagnostic tools and targeted therapeutic strategies.
乳腺癌是最常被诊断的癌症,转移占癌症相关死亡的大部分。早期乳腺癌转移到局部免疫部位如淋巴结的机制尚不清楚。在这里,我们对大量乳腺癌样本进行了深入的蛋白质组学和磷蛋白质组学分析,同时进行了基因组和转录组学评估。该队列包括195个标本:65个原发性乳腺肿瘤,其相应的正常组织和转移性腋窝淋巴结。我们对淋巴结转移过程中转录组、蛋白质组和磷蛋白质组水平的分子改变进行了综述。值得注意的是,研究结果表明,区域淋巴结转移主要受蛋白质组学和磷蛋白质组学改变的影响,而不是基因组或转录组学的变化。我们发现ANGPTL4和HMGB1可以作为淋巴结转移的生物标志物。通过对备选剪接因子HNRNPU沉默的数据分析和细胞实验表明,备选剪接在调节蛋白表达、磷酸化谱和细胞增殖中起重要作用。关键磷酸化位点,包括MARCKSL1-S104和FKBP15-S320,以及上游激酶PRKCB,在乳腺癌淋巴结转移中起着至关重要的作用。靶向干预PRKCB激酶可有效抑制乳腺癌肿瘤细胞的增殖和转移。乳腺癌细胞与CD8+ T细胞共培养的免疫谱分析和实验验证揭示了MARCKSL1-S104和FKBP15-S320磷酸化与免疫检查点PD-L1表达的相关性及其对肿瘤细胞凋亡的影响,提示了转移中免疫逃避的潜在机制。本研究系统地描述了原发性乳腺肿瘤及其匹配的转移性淋巴结的分子特征和特征。这些见解增强了我们对早期乳腺癌转移的理解,并可能为改进诊断工具和靶向治疗策略铺平道路。
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引用次数: 0
Tumor cell intrinsic dsRNA innate immune response triggered by PARP inhibitor is compromised in BRCA1 deficient breast cancer by repressing IRF3. PARP抑制剂通过抑制IRF3抑制BRCA1缺陷乳腺癌的肿瘤细胞内在dsRNA先天免疫反应。
IF 21.1 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-10 DOI: 10.1093/procel/pwaf104
Cuiting Zhang,Jing-Bo Zhou,Josh Haipeng Lei,Irene Ling Ang,Kai Miao,Xiaoling Xu,Terence Chuen Wai Poon,Edwin Cheung,Chu-Xia Deng
Poly (ADP-ribose) polymerase 1 (PARP1) inhibition represents promising targeted therapy for BRCA deficient cancer patients based on synthetic lethality theory. Recent evidence shows that efficacy of DNA damage drugs depends on two aspects, DNA repair signaling and immune response. Applying a functional proteomics approach, we find that the function of spliceosome is perturbed by PARP inhibitors via enhancing interaction between PARP1 and SF3B1, a key factor of spliceosome. We demonstrate that differential alternative spliced mRNA and accumulation of double strand RNA (dsRNA) are induced by perturbation of spliceosome upon PARP inhibitors treatment, resulting in triggering dsRNA antiviral mimicry innate immune response. Moreover, we identify a novel function of BRCA1, through which BRCA1 regulates innate immune response leading to compromising of the innate immune signaling by downregulation of IRF3 in BRCA1 deficient breast cancer cells, which reduces the sensitivity to PARP inhibitors and causes intrinsic resistance. Polyinosinic-polycytidylic acid (poly(I: C)) is a dsRNA synthetic analog sensitizing PARP inhibitors through further triggering dsRNA signaling. Finally, we show that the combination of PARP inhibitors and poly(I: C) enhances antitumor efficiency in vivo. Overall, our study reveals BRCA1 deficiency impedes tumor cell intrinsic innate immune response, inducing intrinsic resistance to PARP inhibitors that can be overcome when poly(I: C) is combined.
基于合成致死性理论,抑制聚(adp -核糖)聚合酶1 (PARP1)是治疗BRCA缺陷癌症患者的有希望的靶向治疗方法。近年来的证据表明,DNA损伤药物的疗效取决于DNA修复信号和免疫反应两个方面。应用功能蛋白质组学方法,我们发现PARP抑制剂通过增强剪接体的关键因子PARP1和SF3B1之间的相互作用来干扰剪接体的功能。我们证明,PARP抑制剂治疗后剪接体的扰动诱导了不同的选择性剪接mRNA和双链RNA (dsRNA)的积累,从而引发dsRNA抗病毒模拟先天免疫反应。此外,我们发现了BRCA1的一种新功能,即BRCA1通过下调BRCA1缺陷乳腺癌细胞中的IRF3来调节先天免疫反应,从而导致先天免疫信号的损害,从而降低对PARP抑制剂的敏感性并引起内在抗性。多肌苷-多胞苷酸(polyinosic -polycytidylic acid, poly(I: C))是一种dsRNA合成类似物,通过进一步触发dsRNA信号通路使PARP抑制剂增敏。最后,我们发现PARP抑制剂和聚(I: C)联合使用可提高体内抗肿瘤效率。总的来说,我们的研究表明BRCA1缺乏会阻碍肿瘤细胞固有的先天免疫反应,诱导对PARP抑制剂的内在抗性,当poly(I: C)联合使用时可以克服这种抗性。
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引用次数: 0
BCL7A's arginine anchor links nucleosome recognition to chromatin remodeling and DLBCL tumor suppression. BCL7A的精氨酸锚定将核小体识别与染色质重塑和DLBCL肿瘤抑制联系起来。
IF 21.1 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-02 DOI: 10.1093/procel/pwaf114
Jingdong Xue,Kai Tian,Xiang Xu,Yuqian Feng,Ming Yu,Min Hao,Mingqian Hu,Wenhan Wang,Jiao Ma,Yixuan Pan,Mengyuan Peng,Jun Wu,Shuang He,Xizi Chen,Yanhui Xu,Wenjuan Wang,Yimin Lao,Bing Li
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引用次数: 0
Accumulation of newly synthesized docosahexaenoic acid plays an essential role in heart regeneration. 新合成的二十二碳六烯酸的积累在心脏再生中起重要作用。
IF 12.8 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-01 DOI: 10.1093/procel/pwaf062
Zimu Tang, Zhaoxiang Sun, Chun Yang, Qian Gong, Zirui Liu, Nanhui Chen, Kai Liu, Yong Wang, Ting Zhao, Shengfan Ye, Lenan Zhuang, Jiahao Lin, Wei-Qiang Tan, Jinrong Peng, Jun Chen

Adult zebrafish and neonatal mice can fully regenerate their hearts after partial amputation through the proliferation of preexisting cardiomyocytes (CMs). However, the adult mammalian heart has limited regenerative capability following cardiac damage. The reason for this phenomenon remains elusive. Here, we find that docosahexaenoic acid (DHA) is accumulated only in the injured hearts of zebrafish and neonatal mice, but not of adult mice, which coincides with the upregulation of DHA synthesis genes in CMs, fibroblasts, and macrophages near the injury areas. Inhibition of Fads2, a DHA synthesis enzyme, impairs heart regeneration in both zebrafish and neonatal mice. Injection of DHA remodels the transcriptome from injury response to regeneration response and improves cardiac function in adult mice after myocardial infarction. Interestingly, DHA facilitates CM proliferation but inhibits fibrosis and inflammation. Mechanistically, only DHA, but not oleic acid (OA), can trigger the peroxisome proliferator-activated receptor d (PPARD) to bind to the promoter regions of heart regeneration-related genes, such as Mef2d, Phlda3, and Txndc5, to regulate their expression. Molecular docking, molecular dynamics simulations, and mutagenesis experiments suggest that DHA binds to PPARD in a distinct manner compared to OA, which may help explain their differing abilities to influence the expression of heart regeneration genes. Our findings demonstrate that the DHA signal plays an essential and evolutionarily conserved role in heart regeneration and provide a therapeutic potential for myocardial infarction.

成年斑马鱼和新生小鼠在部分截肢后可以通过原有心肌细胞(CMs)的增殖完全再生心脏。然而,成年哺乳动物心脏在心脏损伤后具有有限的再生能力。造成这种现象的原因尚不清楚。在这里,我们发现二十二碳六烯酸(DHA)仅在斑马鱼和新生小鼠的损伤心脏中积累,而在成年小鼠中没有,这与损伤区域附近的CMs、成纤维细胞和巨噬细胞中DHA合成基因的上调相一致。抑制DHA合成酶Fads2会损害斑马鱼和新生小鼠的心脏再生。注射DHA可重塑成年小鼠心肌梗死后从损伤反应到再生反应的转录组,改善心功能。有趣的是,DHA促进CM增殖,但抑制纤维化和炎症。机制上,只有DHA能触发过氧化物酶体增殖物激活受体d (PPARD)与Mef2d、Phlda3和Txndc5等心脏再生相关基因的启动子区域结合,调控其表达,而油酸(OA)则不能。分子对接、分子动力学模拟和突变实验表明,与OA相比,DHA以不同的方式结合PPARD,这可能有助于解释它们影响心脏再生基因表达的不同能力。我们的研究结果表明,DHA信号在心脏再生中起着重要的和进化保守作用,并为心肌梗死提供了治疗潜力。
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引用次数: 0
Structure-based engineering of the midnolin-proteasome pathway for targeted protein degradation. 靶向蛋白降解midnolin-蛋白酶体途径的结构工程。
IF 12.8 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-01 DOI: 10.1093/procel/pwaf069
Hongyang Wang, Ying Zheng, Tiantian Wang, Xue Zhang, Peipei Wang, Chuancun Wei, Hongyue Li, Quan Wang, Lu Zhang, Xisong Ke, Wenqing Xu
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引用次数: 0
A single-cell transcriptomic landscape characterizes the endocrine system aging in the mouse. 单细胞转录组的景观特征内分泌系统老化在小鼠。
IF 12.8 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-01 DOI: 10.1093/procel/pwaf074
Ran Wei, Zhehao Du, Jue Wang, Jinlong Bi, Wencong Lyu, Haochen Wang, Jianuo He, Fanju Meng, Lijun Zhang, Chao Zhang, Chen Zhang, Wei Tao

The endocrine system is crucial for maintaining overall homeostasis. However, its cellular signatures have not been elucidated during aging. Here, we conducted the first-ever single-cell transcriptomic profiles from eight endocrine organs in young and aged mice, revealing the activation of cell-type-specific aging pathways, such as loss of proteostasis, genomic instability and reactive oxygen species (ROS). Among six sex-shared endocrine organs, aging severely impaired gene expression networks in functional endocrine cells, accompanied by enhanced immune infiltration and unfolded protein response (UPR). Mechanism investigations showed that expanded aging-associated exhausted T cells activated MHC-I-UPR axis across functional endocrine cells by releasing GZMK. The inhibition of GZMK receptors by small chemical molecules counteracted the UPR and senescence, suggesting the immune infiltration is a possible driver of endocrine aging. Machine learning identified CD59 as a novel aging feature in sex-shared functional endocrine cells. For two sex-specific endocrine organs, both aged ovaries and testes showed enhanced immune responses. Meanwhile, cell-type-specific aging-associated transcriptional changes revealed an enhanced ROS mainly in aged theca cells of ovaries, while aged spermatogonia in testes showed impaired DNA repair. This study provides a comprehensive analysis of endocrine system aging at single-cell resolution, offering profound insights into mechanisms of endocrine aging.

内分泌系统对维持整体体内平衡至关重要。然而,其细胞特征在衰老过程中尚未被阐明。在这里,我们进行了首次来自年轻和老年小鼠8个内分泌器官的单细胞转录组分析,揭示了细胞类型特异性衰老途径的激活,如蛋白质平衡丧失、基因组不稳定和活性氧(ROS)。在6个性别共享的内分泌器官中,衰老严重破坏了功能性内分泌细胞的基因表达网络,并伴有免疫浸润和未折叠蛋白反应(UPR)的增强。机制研究表明,衰老相关的耗竭T细胞通过释放GZMK激活功能性内分泌细胞的MHC-I-UPR轴。小化学分子对GZMK受体的抑制作用抵消了UPR和衰老,提示免疫浸润可能是内分泌衰老的驱动因素。机器学习发现CD59在性别共享的功能性内分泌细胞中是一个新的衰老特征。对于两个性别特异性内分泌器官,衰老的卵巢和睾丸均表现出增强的免疫反应。与此同时,细胞类型特异性衰老相关的转录变化显示,ROS的增强主要发生在卵巢老化的卵泡细胞中,而睾丸老化的精原细胞则表现为DNA修复受损。本研究在单细胞分辨率上对内分泌系统衰老进行了全面的分析,为内分泌衰老的机制提供了深刻的见解。
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引用次数: 0
MMP-9 regulates disulphide isomerase activity of TGM2 to enhance fusion glycoprotein-mediated syncytium formation of respiratory syncytial virus. MMP-9调节TGM2二硫异构酶活性,促进融合糖蛋白介导的呼吸道合胞病毒合胞体形成。
IF 12.8 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-01 DOI: 10.1093/procel/pwaf063
Bao Xue, Anqi Zhou, Yihang Zhong, Yuhan Mao, Ran Peng, Yuhang Chen, Jiayi Zhong, Junjun Liu, Yuan Zhou, Yuying Fang, Wei Zhang, Jielin Tang, Wei Peng, Jia Liu, Qi Yang, Xinwen Chen

Respiratory syncytial virus (RSV) exploits host proteases to enhance its replication efficiency; however, the precise mechanisms remain unclear. Through high-throughput screening, we identified four matrix metalloproteinase 9 (MMP-9) inhibitors (including JNJ0966 and doxycycline hyclate) that suppress RSV infection in vitro and in vivo. Mechanistic studies revealed a proteolytic cascade wherein MMP-9 cleaves transglutaminase 2 (TGM2) at the PVP375↓VR site, generating an N-terminal fragment (1-375) that activates its protein disulfide isomerase (PDI) activity. This TGM2-dependent PDI activity catalyzes disulfide bond rearrangement in the RSV fusion glycoprotein (F), enabling F protein maturation, a prerequisite for membrane fusion and syncytium formation-key processes driving late-stage viral propagation. Genetic ablation of MMP-9 significantly attenuated RSV infectivity, while pharmacological inhibition reduced pulmonary viral loads and mitigated lung pathology in infected mice. Our study defines a unified MMP-9→TGM2→F axis as the core mechanism driving RSV replication and validates MMP-9 as a therapeutic target.

呼吸道合胞病毒(RSV)利用宿主蛋白酶提高其复制效率;然而,确切的机制仍不清楚。通过高通量筛选,我们鉴定出4种基质金属蛋白酶9 (matrix metalloproteinase 9, MMP-9)抑制剂(包括JNJ0966和水合强力霉素)在体外和体内均能抑制RSV感染。机制研究揭示了一个蛋白水解级联反应,其中MMP-9在PVP375↓VR位点切割转谷氨酰胺酶2 (TGM2),产生一个n端片段(1-375),激活其蛋白二硫异构酶(PDI)活性。这种tgm2依赖性PDI活性催化RSV融合糖蛋白(F)中的二硫键重排,使F蛋白成熟,这是膜融合和合胞体形成的先决条件,这是驱动病毒后期传播的关键过程。基因消融MMP-9可显著降低RSV的传染性,而药物抑制可降低感染小鼠的肺部病毒载量并减轻肺部病理。我们的研究确定了一个统一的MMP-9→TGM2→F轴作为驱动RSV复制的核心机制,并验证了MMP-9作为一个治疗靶点。
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引用次数: 0
Correction to: Genome-wide CRISPR screen identifies synthetic lethality between DOCK1 inhibition and metformin in liver cancer. 更正:全基因组CRISPR筛选鉴定了肝癌中DOCK1抑制和二甲双胍之间的合成致死性。
IF 12.8 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2026-01-01 DOI: 10.1093/procel/pwaf036
{"title":"Correction to: Genome-wide CRISPR screen identifies synthetic lethality between DOCK1 inhibition and metformin in liver cancer.","authors":"","doi":"10.1093/procel/pwaf036","DOIUrl":"10.1093/procel/pwaf036","url":null,"abstract":"","PeriodicalId":20790,"journal":{"name":"Protein & Cell","volume":" ","pages":"89"},"PeriodicalIF":12.8,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12888915/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144226486","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Epigenetic editing of the STAT5B promoter attenuates milk nutrient loss in a bovine mastitis cell model. STAT5B启动子的表观遗传编辑减少了牛乳腺炎细胞模型中的乳营养损失。
IF 12.8 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-12-30 DOI: 10.1093/procel/pwaf113
Sixue Li, Xiao Li, Qing Liu, Yongwang Miao, Le Kang, Feng Jiang
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引用次数: 0
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