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Identification of a novel nonsense mutation in α-galactosidase A that causes Fabry disease in a Chinese family. 在一个中国家庭中鉴定出一种导致法布里病的α-半乳糖苷酶A新型无义突变。
IF 3 3区 医学 Q1 UROLOGY & NEPHROLOGY Pub Date : 2024-12-01 Epub Date: 2024-06-07 DOI: 10.1080/0886022X.2024.2362391
Yushi Peng, Meize Pan, Yuchen Wang, Zongrui Shen, Jian Xu, Fu Xiong, Hongbo Xiao, Yun Miao

Fabry disease, a lysosomal storage disease, is an uncommon X-linked recessive genetic disorder stemming from abnormalities in the alpha-galactosidase gene (GLA) that codes human alpha-Galactosidase A (α-Gal A). To date, over 800 GLA mutations have been found to cause Fabry disease (FD). Continued enhancement of the GLA mutation spectrum will contribute to a deeper recognition and underlying mechanisms of FD. In this study, a 27-year-old male proband exhibited a typical phenotype of Fabry disease. Subsequently, family screening for Fabry disease was conducted, and high-throughput sequencing was employed to identify the mutated gene. The three-level structure of the mutated protein was analyzed, and its subcellular localization and enzymatic activity were determined. Apoptosis was assessed in GLA mutant cell lines to confirm the functional effects. As a result, a new mutation, c.777_778del (p. Gly261Leufs*3), in the GLA gene was identified. The mutation caused a frameshift during translation and the premature appearance of a termination codon, which led to a partial deletion of the domain in C-terminal region and altered the protein's tertiary structure. In vitro experiments revealed a significant reduction of the enzymatic activity in mutant cells. The expression was noticeably decreased at the mRNA and protein levels in mutant cell lines. Additionally, the subcellular localization of α-Gal A changed from a homogeneous distribution to punctate aggregation in the cytoplasm. GLA mutant cells exhibited significantly higher levels of apoptosis compared to wild-type cells.

法布里病是一种溶酶体贮积病,是一种不常见的 X 连锁隐性遗传疾病,源于编码人类α-半乳糖苷酶 A(α-Gal A)的α-半乳糖苷酶基因(GLA)异常。迄今为止,已发现 800 多种 GLA 基因突变可导致法布里病(FD)。不断扩大 GLA 基因突变谱将有助于更深入地认识法布里病及其潜在机制。在本研究中,一名 27 岁的男性原患者表现出典型的法布里病表型。随后,进行了法布里病家族筛查,并采用高通量测序鉴定了突变基因。对突变蛋白的三级结构进行了分析,并确定了其亚细胞定位和酶活性。评估了GLA突变细胞系的凋亡情况,以确认其功能效应。结果,在 GLA 基因中发现了一个新的突变,即 c.777_778del (p. Gly261Leufs*3)。该突变导致翻译过程中的框架偏移和终止密码子的过早出现,从而导致 C 端区域结构域的部分缺失,并改变了蛋白质的三级结构。体外实验显示,突变体细胞的酶活性显著降低。突变体细胞系的 mRNA 和蛋白质水平的表达量明显下降。此外,α-Gal A 的亚细胞定位从均匀分布变为细胞质中的点状聚集。与野生型细胞相比,GLA突变型细胞的凋亡水平明显更高。
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引用次数: 0
An extra honey polyphenols-rich diet ameliorates the high-fat diet induced chronic kidney disease via modulating gut microbiota in C57BL/6 mice. 富含额外蜂蜜多酚的饮食可通过调节 C57BL/6 小鼠的肠道微生物群来改善高脂饮食诱发的慢性肾病。
IF 3 3区 医学 Q1 UROLOGY & NEPHROLOGY Pub Date : 2024-12-01 Epub Date: 2024-06-28 DOI: 10.1080/0886022X.2024.2367700
Xirong Cao, Fangrui Xu, Haoan Zhao, Jingyao Zhang, Chang Liu

Honey is not equivalent to sugar and possess a worldwide health promoting effects such as antioxidant, antibacterial, anti-inflammatory, and hepatoprotective activities. Nevertheless, the potential impacts of honey on high-fat diet induced chronic kidney disease (CKD) and gut microbiota remain to be explored. Herein a high-fat diet was used to induce a mouse CKD model, and analysis was conducted on liver, kidney, spleen indices, tissue morphology, biochemical parameters, CKD related genes, and gut microbial diversity. The results indicated that significant inhibitory effects on renal damage caused by a high-fat diet in mice and improvement in disease symptoms were observed upon honey treatment. Significant changes were also found in serum TC, TG, UA, and BUN as well as the inflammation-related protein TNF-α and IL-6 levels in renal tissues. Gene expression analysis revealed that honey intake closely relates to gut microbiota diversity, which can regulate the composition of gut microbiota, increase microbial diversity, especially Bifidobacteriales and S24_7 and promote the synthesis of short chain fatty acids (SCFAs). In summary, this study suggests that honey has both preventive and therapeutic effects on CKD, which may be associated with its ability to improve microbial composition, increase microbial diversity, and regulate SCFAs levels.

蜂蜜并不等同于糖,它在全世界范围内都具有促进健康的作用,如抗氧化、抗菌、抗炎和保肝等活性。然而,蜂蜜对高脂饮食诱发的慢性肾病(CKD)和肠道微生物群的潜在影响仍有待探索。本文采用高脂饮食诱导小鼠慢性肾脏病模型,并对肝脏、肾脏、脾脏指数、组织形态、生化指标、慢性肾脏病相关基因和肠道微生物多样性进行了分析。结果表明,蜂蜜治疗可明显抑制高脂饮食对小鼠肾脏造成的损伤,并改善疾病症状。血清 TC、TG、UA 和 BUN 以及肾组织中炎症相关蛋白 TNF-α 和 IL-6 水平也发生了显著变化。基因表达分析表明,蜂蜜的摄入量与肠道微生物群的多样性密切相关,它可以调节肠道微生物群的组成,增加微生物的多样性,尤其是双歧杆菌和 S24_7,并促进短链脂肪酸(SCFAs)的合成。总之,这项研究表明,蜂蜜对慢性肾功能衰竭具有预防和治疗作用,这可能与蜂蜜能够改善微生物组成、增加微生物多样性和调节 SCFAs 水平有关。
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引用次数: 0
Mesangial cell-derived CircRNAs in chronic glomerulonephritis: RNA sequencing and bioinformatics analysis. 慢性肾小球肾炎中间质细胞衍生的 CircRNA:RNA测序和生物信息学分析
IF 3 3区 医学 Q1 UROLOGY & NEPHROLOGY Pub Date : 2024-12-01 Epub Date: 2024-07-01 DOI: 10.1080/0886022X.2024.2371059
Ji Hui Fan, Xiao Min Li

Background: Circular RNAs (circRNAs) have been shown to play critical roles in the initiation and progression of chronic glomerulonephritis (CGN), while their role from mesangial cells in contributing to the pathogenesis of CGN is rarely understood. Our study aims to explore the potential functions of mesangial cell-derived circRNAs using RNA sequencing (RNA-seq) and bioinformatics analysis.

Methods: Mouse mesangial cells (MMCs) were stimulated by lipopolysaccharide (LPS) to establish an in vitro model of CGN. Pro-inflammatory cytokines and cell cycle stages were detected by Enzyme-linked immunosorbent assay (ELISA) and Flow Cytometry experiment, respectively. Subsequently, differentially expressed circRNAs (DE-circRNAs) were identified by RNA-seq. GEO microarrays were used to identify differentially expressed mRNAs (DE-mRNAs) between CGN and healthy populations. Weighted co-expression network analysis (WGCNA) was utilized to explore clinically significant modules of CGN. CircRNA-associated CeRNA networks were constructed by bioinformatics analysis. The hub mRNAs from CeRNA network were identified using LASSO algorithms. Furthermore, utilizing protein-protein interaction (PPI), gene ontology (GO), pathway enrichment (KEGG), and GSEA analyses to explore the potential biological function of target genes from CeRNA network. In addition, we investigated the relationships between immune cells and hub mRNAs from CeRNA network using CIBERSORT.

Results: The expression of pro-inflammatory cytokines IL-1β, IL-6, and TNF-α was drastically increased in LPS-induced MMCs. The number of cells decreased significantly in the G1 phase but increased significantly in the S/G2 phase. A total of 6 DE-mRNAs were determined by RNA-seq, including 4 up-regulated circRNAs and 2 down-regulated circRNAs. WGCNA analysis identified 1747 DE-mRNAs of the turquoise module from CGN people in the GEO database. Then, the CeRNA networks, including 6 circRNAs, 38 miRNAs, and 80 mRNAs, were successfully constructed. The results of GO and KEGG analyses revealed that the target mRNAs were mainly enriched in immune, infection, and inflammation-related pathways. Furthermore, three hub mRNAs (BOC, MLST8, and HMGCS2) from the CeRNA network were screened using LASSO algorithms. GSEA analysis revealed that hub mRNAs were implicated in a great deal of immune system responses and inflammatory pathways, including IL-5 production, MAPK signaling pathway, and JAK-STAT signaling pathway. Moreover, according to an evaluation of immune infiltration, hub mRNAs have statistical correlations with neutrophils, plasma cells, monocytes, and follicular helper T cells.

Conclusions: Our findings provide fundamental and novel insights for further investigations into the role of mesangial cell-derived circRNAs in CGN pathogenesis.

背景:循环RNAs(circRNAs)已被证明在慢性肾小球肾炎(CGN)的发生和发展过程中起着关键作用,而它们从系膜细胞中提取并在CGN发病机制中的作用却鲜为人知。我们的研究旨在利用 RNA 测序(RNA-seq)和生物信息学分析探索系膜细胞衍生的 circRNAs 的潜在功能:方法:用脂多糖(LPS)刺激小鼠间质细胞(MMCs),建立 CGN 体外模型。通过酶联免疫吸附试验(ELISA)和流式细胞术实验分别检测促炎细胞因子和细胞周期阶段。随后,通过 RNA-seq 鉴定了差异表达的 circRNAs(DE-circRNAs)。GEO 微阵列用于鉴定 CGN 和健康人群之间差异表达的 mRNA(DE-mRNA)。利用加权共表达网络分析(WGCNA)来探索具有临床意义的 CGN 模块。通过生物信息学分析构建了CircRNA相关的CeRNA网络。利用 LASSO 算法识别了 CeRNA 网络中的中心 mRNA。此外,我们还利用蛋白质-蛋白质相互作用(PPI)、基因本体(GO)、通路富集(KEGG)和 GSEA 分析来探索 CeRNA 网络中靶基因的潜在生物学功能。此外,我们还利用 CIBERSORT 研究了免疫细胞与 CeRNA 网络中枢 mRNA 之间的关系:结果:在 LPS 诱导的 MMCs 中,促炎细胞因子 IL-1β、IL-6 和 TNF-α 的表达急剧增加。细胞数量在 G1 期明显减少,但在 S/G2 期明显增加。RNA-seq共测定了6个DE-mRNA,包括4个上调的circRNA和2个下调的circRNA。WGCNA分析从GEO数据库中的CGN人群中发现了1747个绿松石模块的DE-mRNA。然后,成功构建了包括 6 个 circRNA、38 个 miRNA 和 80 个 mRNA 的 CeRNA 网络。GO和KEGG分析结果显示,目标mRNA主要富集于免疫、感染和炎症相关通路。此外,利用 LASSO 算法筛选了 CeRNA 网络中的三个中心 mRNA(BOC、MLST8 和 HMGCS2)。GSEA分析显示,中枢mRNA与大量免疫系统反应和炎症通路有关,包括IL-5的产生、MAPK信号通路和JAK-STAT信号通路。此外,根据对免疫浸润的评估,中枢 mRNA 与中性粒细胞、浆细胞、单核细胞和滤泡辅助 T 细胞有统计学相关性:我们的研究结果为进一步研究间质细胞衍生的 circRNA 在 CGN 发病机制中的作用提供了基础性的新见解。
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引用次数: 0
Fractionated plasma separation and adsorption integrated with continuous veno-venous hemofiltration in patients with acute bipyridine herbicide poisoning. 急性联吡啶类除草剂中毒患者的分馏血浆分离和吸附与连续静脉-静脉血液滤过相结合。
IF 3 3区 医学 Q1 UROLOGY & NEPHROLOGY Pub Date : 2024-12-01 Epub Date: 2024-07-05 DOI: 10.1080/0886022X.2024.2374013
Jian-Hua Dong, Minghong Zhang, Xi Yang, Bian Wu, Li Huang, Chuan Li, Yongchun Ge

Objective: To evaluate the clinical efficacy and safety of fractionated plasma separation and adsorption combined with continuous veno-venous hemofiltration (FPSA-CVVH) treatment in patients with acute bipyridine herbicide poisoning.

Methods: A retrospective analysis of 18 patients with acute bipyridine herbicide poisoning was conducted, of which 9 patients were poisoned by diquat and 9 patients by paraquat. All patients underwent FPSA-CVVH treatment. The serum cytokine levels in pesticide-poisoned patients were assessed. The efficacy of FPSA-CVVH in eliminating cytokines, the 90-d survival rate of poisoned patients, and adverse reactions to the treatment were observed.

Results: Fourteen patients (77.8%) had acute kidney injuries and 10 (55.6%) had acute liver injuries. The serum cytokine levels of high mobility group protein B-1 (HMGB-1), interleukin-6 (IL-6), IL-8, interferon-inducible protein-10 (IP-10), monocyte chemotactic protein-1 (MCP-1), and macrophage inflammatory protein-1β (MIP-1β) were significantly elevated. A total of 41 FPSA-CVVH treatment sessions were administered. After a single 8-h FPSA-CVVH treatment, the decreases in HMGB-1, IL-6, IL-8, IP-10, MCP-1, and MIP-1β were 66.0%, 63.5%, 73.3%, 63.7%, 53.9%, and 54.1%, respectively. During FPSA-CVVH treatment, one patient required a filter change due to coagulation in the plasma component separator, and one experienced a bleeding adverse reaction. The 90-d patient survival rate was 50%, with 4 patients with diquat poisoning and 5 patients with paraquat poisoning, and both liver and kidney functions were restored to normal.

Conclusion: Cytokine storms may play a significant role in the progression of multiorgan dysfunction in patients with acute bipyridine herbicide poisoning. FPSA-CVVH can effectively reduce cytokine levels, increase the survival rate of patients with acute bipyridine herbicide poisoning, and decrease the incidence of adverse events.

目的评估分馏血浆分离吸附联合持续静脉-静脉血液滤过(FPSA-CVVH)治疗急性联吡啶类除草剂中毒患者的临床疗效和安全性:对18例急性联吡啶类除草剂中毒患者进行了回顾性分析,其中9例为敌草快中毒,9例为百草枯中毒。所有患者均接受了 FPSA-CVVH 治疗。对农药中毒患者的血清细胞因子水平进行了评估。观察了 FPSA-CVVH 消除细胞因子的疗效、中毒患者的 90 天存活率以及治疗后的不良反应:结果:14 名患者(77.8%)出现急性肾损伤,10 名患者(55.6%)出现急性肝损伤。血清中高迁移率基团蛋白 B-1 (HMGB-1)、白细胞介素-6 (IL-6)、IL-8、干扰素诱导蛋白-10 (IP-10)、单核细胞趋化蛋白-1 (MCP-1)、巨噬细胞炎症蛋白-1β (MIP-1β)等细胞因子水平明显升高。共进行了 41 次 FPSA-CVVH 治疗。单次 8 小时 FPSA-CVVH 治疗后,HMGB-1、IL-6、IL-8、IP-10、MCP-1 和 MIP-1β 的降幅分别为 66.0%、63.5%、73.3%、63.7%、53.9% 和 54.1%。在FPSA-CVVH治疗期间,一名患者因血浆成分分离器中的凝血而需要更换过滤器,一名患者出现出血不良反应。90天存活率为50%,其中4例为敌草快中毒,5例为百草枯中毒,肝肾功能均恢复正常:结论:细胞因子风暴可能在急性联吡啶类除草剂中毒患者多器官功能障碍的发展过程中起着重要作用。FPSA-CVVH可有效降低细胞因子水平,提高急性联吡啶类除草剂中毒患者的存活率,降低不良反应的发生率。
{"title":"Fractionated plasma separation and adsorption integrated with continuous veno-venous hemofiltration in patients with acute bipyridine herbicide poisoning.","authors":"Jian-Hua Dong, Minghong Zhang, Xi Yang, Bian Wu, Li Huang, Chuan Li, Yongchun Ge","doi":"10.1080/0886022X.2024.2374013","DOIUrl":"10.1080/0886022X.2024.2374013","url":null,"abstract":"<p><strong>Objective: </strong>To evaluate the clinical efficacy and safety of fractionated plasma separation and adsorption combined with continuous veno-venous hemofiltration (FPSA-CVVH) treatment in patients with acute bipyridine herbicide poisoning.</p><p><strong>Methods: </strong>A retrospective analysis of 18 patients with acute bipyridine herbicide poisoning was conducted, of which 9 patients were poisoned by diquat and 9 patients by paraquat. All patients underwent FPSA-CVVH treatment. The serum cytokine levels in pesticide-poisoned patients were assessed. The efficacy of FPSA-CVVH in eliminating cytokines, the 90-d survival rate of poisoned patients, and adverse reactions to the treatment were observed.</p><p><strong>Results: </strong>Fourteen patients (77.8%) had acute kidney injuries and 10 (55.6%) had acute liver injuries. The serum cytokine levels of high mobility group protein B-1 (HMGB-1), interleukin-6 (IL-6), IL-8, interferon-inducible protein-10 (IP-10), monocyte chemotactic protein-1 (MCP-1), and macrophage inflammatory protein-1β (MIP-1β) were significantly elevated. A total of 41 FPSA-CVVH treatment sessions were administered. After a single 8-h FPSA-CVVH treatment, the decreases in HMGB-1, IL-6, IL-8, IP-10, MCP-1, and MIP-1β were 66.0%, 63.5%, 73.3%, 63.7%, 53.9%, and 54.1%, respectively. During FPSA-CVVH treatment, one patient required a filter change due to coagulation in the plasma component separator, and one experienced a bleeding adverse reaction. The 90-d patient survival rate was 50%, with 4 patients with diquat poisoning and 5 patients with paraquat poisoning, and both liver and kidney functions were restored to normal.</p><p><strong>Conclusion: </strong>Cytokine storms may play a significant role in the progression of multiorgan dysfunction in patients with acute bipyridine herbicide poisoning. FPSA-CVVH can effectively reduce cytokine levels, increase the survival rate of patients with acute bipyridine herbicide poisoning, and decrease the incidence of adverse events.</p>","PeriodicalId":20839,"journal":{"name":"Renal Failure","volume":"46 2","pages":"2374013"},"PeriodicalIF":3.0,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11229766/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141535094","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LPS-induced senescence of macrophages aggravates calcification and senescence of vascular smooth muscle cells via IFITM3. LPS 诱导的巨噬细胞衰老会通过 IFITM3 加剧血管平滑肌细胞的钙化和衰老。
IF 3 3区 医学 Q1 UROLOGY & NEPHROLOGY Pub Date : 2024-12-01 Epub Date: 2024-07-08 DOI: 10.1080/0886022X.2024.2367708
Ya-Ping Fang, Xin Yang, Ying Zhang, Xiao-Dong Zhu, Xiao-Xu Wang, Yan Liu, Wen Shi, Jia-Yi Huang, Yu Zhao, Xiao-Liang Zhang

Background: Cellular senescence, macrophages infiltration, and vascular smooth muscle cells (VSMCs) osteogenic transdifferentiation participate in the pathophysiology of vascular calcification in chronic kidney disease (CKD). Senescent macrophages are involved in the regulation of inflammation in pathological diseases. In addition, senescent cells spread senescence to neighboring cells via Interferon-induced transmembrane protein3 (IFITM3). However, the role of senescent macrophages and IFITM3 in VSMCs calcification remains unexplored.

Aims: To explore the hypothesis that senescent macrophages contribute to the calcification and senescence of VSMCs via IFITM3.

Methods: Here, the macrophage senescence model was established using Lipopolysaccharides (LPS). The VSMCs were subjected to supernatants from macrophages (MCFS) or LPS-induced macrophages (LPS-MCFS) in the presence or absence of calcifying media (CM). Senescence-associated β-galactosidase (SA-β-gal), Alizarin red (AR), immunofluorescent staining, and western blot were used to identify cell senescence and calcification.

Results: The expression of IFITM3 was significantly increased in LPS-induced macrophages and the supernatants. The VSMCs transdifferentiated into osteogenic phenotype, expressing higher osteogenic differentiation markers (RUNX2) and lower VSMCs constructive makers (SM22α) when cultured with senescent macrophages supernatants. Also, senescence markers (p16 and p21) in VSMCs were significantly increased by senescent macrophages supernatants treated. However, IFITM3 knockdown inhibited this process.

Conclusions: Our study showed that LPS-induced senescence of macrophages accelerated the calcification of VSMCs via IFITM3. These data provide a new perspective linking VC and aging, which may provide clues for diagnosing and treating accelerated vascular aging in patients with CKD.

背景:细胞衰老、巨噬细胞浸润和血管平滑肌细胞(VSMCs)成骨转分化参与了慢性肾脏病(CKD)血管钙化的病理生理学过程。衰老的巨噬细胞参与病理疾病中炎症的调节。此外,衰老细胞通过干扰素诱导跨膜蛋白3(IFITM3)将衰老扩散到邻近细胞。目的:探讨衰老巨噬细胞通过 IFITM3 促进 VSMCs 钙化和衰老的假说。在有或没有钙化培养基(CM)的情况下,将 VSMCs 放入巨噬细胞(MCFS)或 LPS 诱导的巨噬细胞(LPS-MCFS)的上清液中。衰老相关的β-半乳糖苷酶(SA-β-gal)、茜素红(AR)、免疫荧光染色和免疫印迹用于鉴定细胞衰老和钙化:结果:在 LPS 诱导的巨噬细胞和上清液中,IFITM3 的表达明显增加。用衰老巨噬细胞上清培养的 VSMCs 转分化为成骨表型,表达较高的成骨分化标志物(RUNX2)和较低的 VSMCs 构建者(SM22α)。此外,衰老巨噬细胞上清液处理后,VSMCs 中的衰老标记物(p16 和 p21)明显增加。结论:我们的研究表明,LPS 诱导的巨噬细胞衰老通过 IFITM3 加速了 VSMCs 的钙化。这些数据提供了一个将血管钙化和衰老联系起来的新视角,可能为诊断和治疗慢性肾脏病患者血管加速衰老提供线索。
{"title":"LPS-induced senescence of macrophages aggravates calcification and senescence of vascular smooth muscle cells via IFITM3.","authors":"Ya-Ping Fang, Xin Yang, Ying Zhang, Xiao-Dong Zhu, Xiao-Xu Wang, Yan Liu, Wen Shi, Jia-Yi Huang, Yu Zhao, Xiao-Liang Zhang","doi":"10.1080/0886022X.2024.2367708","DOIUrl":"10.1080/0886022X.2024.2367708","url":null,"abstract":"<p><strong>Background: </strong>Cellular senescence, macrophages infiltration, and vascular smooth muscle cells (VSMCs) osteogenic transdifferentiation participate in the pathophysiology of vascular calcification in chronic kidney disease (CKD). Senescent macrophages are involved in the regulation of inflammation in pathological diseases. In addition, senescent cells spread senescence to neighboring cells via Interferon-induced transmembrane protein3 (IFITM3). However, the role of senescent macrophages and IFITM3 in VSMCs calcification remains unexplored.</p><p><strong>Aims: </strong>To explore the hypothesis that senescent macrophages contribute to the calcification and senescence of VSMCs via IFITM3.</p><p><strong>Methods: </strong>Here, the macrophage senescence model was established using Lipopolysaccharides (LPS). The VSMCs were subjected to supernatants from macrophages (MCFS) or LPS-induced macrophages (LPS-MCFS) in the presence or absence of calcifying media (CM). Senescence-associated β-galactosidase (SA-β-gal), Alizarin red (AR), immunofluorescent staining, and western blot were used to identify cell senescence and calcification.</p><p><strong>Results: </strong>The expression of IFITM3 was significantly increased in LPS-induced macrophages and the supernatants. The VSMCs transdifferentiated into osteogenic phenotype, expressing higher osteogenic differentiation markers (RUNX2) and lower VSMCs constructive makers (SM22α) when cultured with senescent macrophages supernatants. Also, senescence markers (p16 and p21) in VSMCs were significantly increased by senescent macrophages supernatants treated. However, IFITM3 knockdown inhibited this process.</p><p><strong>Conclusions: </strong>Our study showed that LPS-induced senescence of macrophages accelerated the calcification of VSMCs <i>via</i> IFITM3. These data provide a new perspective linking VC and aging, which may provide clues for diagnosing and treating accelerated vascular aging in patients with CKD.</p>","PeriodicalId":20839,"journal":{"name":"Renal Failure","volume":"46 2","pages":"2367708"},"PeriodicalIF":3.0,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11232647/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141555407","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The correlation between anti-phospholipase A2 receptor antibodies and hypercoagulability in patients with idiopathic membranous nephropathy. 特发性膜性肾病患者体内抗磷脂酶 A2 受体抗体与高凝状态之间的相关性。
IF 3 3区 医学 Q1 UROLOGY & NEPHROLOGY Pub Date : 2024-12-01 Epub Date: 2024-07-08 DOI: 10.1080/0886022X.2024.2374448
Yunyun Liu, Yujie Tang, Wei-Bo Le, Dacheng Chen, Dandan Liang, Feng Xu, Shaoshan Liang, Yongzhong Zhong, Caihong Zeng

Background: Patients with idiopathic membranous nephropathy (IMN) are more likely to be complicated by venous thromboembolism (VTE). The aim of the study was to investigate the potential association between anti-phospholipase A2 receptor (PLA2R) antibodies and hypercoagulability in patients with IMN.

Methods: A total of 168 patients with biopsy-proven IMN and 36 patients with biopsy-proven minimal change disease (MCD) were enrolled in this study. The clinical data, serum anti-PLA2R antibodies and coagulation-related indices of the patients were retrospectively analyzed.

Results: Patients with IMN were categorized into glomerular PLA2R staining-positive (GAg+) IMN group and glomerular PLA2R staining-negative (GAg-) IMN group in the study. Patients with IMN who were GAg + had lower PT, APTT and R time than patients with IMN who were GAg-, while the CI value was higher in patients with IMN who were GAg+. Patients with IMN who were GAg + were divided into the SAb+/GAg + group and the SAb-/GAg + group. Patients with IMN who were SAb+/GAg + had higher Fib and MA values than patients with IMN who were SAb-/GAg+. Correlation analysis showed that serum anti-PLA2R antibodies were positively correlated with fibrinogen, D-dimer, K time, CI value, α-angle, and MA value. Multiple linear regression analysis indicated that anti-PLA2R antibodies were independently correlated with fibrinogen and MA value.

Conclusion: Our study provides a new perspective on the underlying mechanisms of hypercoagulability in patients with IMN. Anti-PLA2R antibodies are associated with hypercoagulability in patients with IMN and may affect coagulation in patients with IMN by affecting platelet aggregation function and fibrinogen counts.

背景:特发性膜性肾病(IMN)患者更有可能并发静脉血栓栓塞症(VTE)。本研究旨在探讨抗磷脂酶 A2 受体(PLA2R)抗体与特发性膜性肾病患者高凝状态之间的潜在关联:本研究共纳入了168例经活检证实的IMN患者和36例经活检证实的微小病变(MCD)患者。对患者的临床数据、血清抗 PLA2R 抗体和凝血相关指标进行了回顾性分析:研究将IMN患者分为肾小球PLA2R染色阳性(GAg+)IMN组和肾小球PLA2R染色阴性(GAg-)IMN组。与 GAg- IMN 患者相比,GAg+ IMN 患者的 PT、APTT 和 R 时间较低,而 GAg+ IMN 患者的 CI 值较高。GAg + 的 IMN 患者被分为 SAb+/GAg + 组和 SAb-/GAg + 组。与 SAb-/GAg+ IMN 患者相比,SAb+/GAg + IMN 患者的 Fib 值和 MA 值更高。相关性分析表明,血清抗 PLA2R 抗体与纤维蛋白原、D-二聚体、K 时间、CI 值、α 角和 MA 值呈正相关。多元线性回归分析表明,抗 PLA2R 抗体与纤维蛋白原和 MA 值独立相关:我们的研究为 IMN 患者高凝状态的潜在机制提供了一个新的视角。抗PLA2R抗体与IMN患者的高凝状态有关,并可能通过影响血小板聚集功能和纤维蛋白原数量来影响IMN患者的凝血功能。
{"title":"The correlation between anti-phospholipase A2 receptor antibodies and hypercoagulability in patients with idiopathic membranous nephropathy.","authors":"Yunyun Liu, Yujie Tang, Wei-Bo Le, Dacheng Chen, Dandan Liang, Feng Xu, Shaoshan Liang, Yongzhong Zhong, Caihong Zeng","doi":"10.1080/0886022X.2024.2374448","DOIUrl":"10.1080/0886022X.2024.2374448","url":null,"abstract":"<p><strong>Background: </strong>Patients with idiopathic membranous nephropathy (IMN) are more likely to be complicated by venous thromboembolism (VTE). The aim of the study was to investigate the potential association between anti-phospholipase A2 receptor (PLA2R) antibodies and hypercoagulability in patients with IMN.</p><p><strong>Methods: </strong>A total of 168 patients with biopsy-proven IMN and 36 patients with biopsy-proven minimal change disease (MCD) were enrolled in this study. The clinical data, serum anti-PLA2R antibodies and coagulation-related indices of the patients were retrospectively analyzed.</p><p><strong>Results: </strong>Patients with IMN were categorized into glomerular PLA2R staining-positive (GAg+) IMN group and glomerular PLA2R staining-negative (GAg-) IMN group in the study. Patients with IMN who were GAg + had lower PT, APTT and R time than patients with IMN who were GAg-, while the CI value was higher in patients with IMN who were GAg+. Patients with IMN who were GAg + were divided into the SAb+/GAg + group and the SAb-/GAg + group. Patients with IMN who were SAb+/GAg + had higher Fib and MA values than patients with IMN who were SAb-/GAg+. Correlation analysis showed that serum anti-PLA2R antibodies were positively correlated with fibrinogen, D-dimer, K time, CI value, α-angle, and MA value. Multiple linear regression analysis indicated that anti-PLA2R antibodies were independently correlated with fibrinogen and MA value.</p><p><strong>Conclusion: </strong>Our study provides a new perspective on the underlying mechanisms of hypercoagulability in patients with IMN. Anti-PLA2R antibodies are associated with hypercoagulability in patients with IMN and may affect coagulation in patients with IMN by affecting platelet aggregation function and fibrinogen counts.</p>","PeriodicalId":20839,"journal":{"name":"Renal Failure","volume":"46 2","pages":"2374448"},"PeriodicalIF":3.0,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11232635/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141555408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Protective effect and mechanism of Xiaoyu Xiezhuo decoction on ischemia-reperfusion induced acute kidney injury based on gut-kidney crosstalk. 基于肠肾串联的小柴胡汤对缺血再灌注诱导的急性肾损伤的保护作用及其机制
IF 3 3区 医学 Q1 UROLOGY & NEPHROLOGY Pub Date : 2024-12-01 Epub Date: 2024-07-16 DOI: 10.1080/0886022X.2024.2365982
Yue Ji, Yunming Xiao, Shipian Li, Yihua Fan, Yuzi Cai, Bo Yang, Hongbo Chen, Shouci Hu

This study aimed to explore the mechanism of Xiaoyu Xiezhuo decoction (XXD) on ischemia-reperfusion-induced acute kidney injury (IRI-AKI) using network pharmacology methods and gut microbiota analysis. A total of 1778 AKI-related targets were obtained, including 140 targets possibly regulated by AKI in XXD, indicating that the core targets were mainly enriched in inflammatory-related pathways, such as the IL-17 signaling pathway and TNF signaling pathway. The unilateral IRI-AKI animal model was established and randomly divided into four groups: the sham group, the AKI group, the sham + XXD group, and the AKI + XXD group. Compared with the rats in the AKI group, XXD improved not only renal function, urinary enzymes, and biomarkers of renal damage such as Kim-1, cystatin C, and serum inflammatory factors such as IL-17, TNF-α, IL-6, and IL 1-β, but also intestinal metabolites including lipopolysaccharides, d-lactic acid, indoxyl sulfate, p-cresyl sulfate, and short-chain fatty acids. XXD ameliorated renal and colonic pathological injury as well as inflammation and chemokine gene abundance, such as IL-17, TNF-α, IL-6, IL-1β, ICAM-1, and MCP-1, in AKI rats via the TLR4/NF-κB/NLRP3 pathway, reducing the AKI score, renal pathological damage, and improving the intestinal mucosa's inflammatory infiltration. It also repaired markers of the mucosal barrier, including claudin-1, occludin, and ZO-1. Compared with the rats in the AKI group, the α diversity was significantly increased, and the Chao1 index was significantly enhanced after XXD treatment in both the sham group and the AKI group. The treatment group significantly reversed this change in microbiota.

本研究旨在利用网络药理学方法和肠道微生物群分析,探讨小柴胡汤(XXD)对缺血再灌注诱导急性肾损伤(IRI-AKI)的作用机制。结果表明,核心靶点主要集中在炎症相关通路,如IL-17信号通路和TNF信号通路。建立了单侧IRI-AKI动物模型,并随机分为四组:假组、AKI组、假+XXD组和AKI+XXD组。与AKI组大鼠相比,XXD不仅改善了肾功能、尿酶、肾损伤生物标志物(如Kim-1、胱抑素C)和血清炎症因子(如IL-17、TNF-α、IL-6和IL 1-β),还改善了肠道代谢物(包括脂多糖、d-乳酸、硫酸吲哚基酯、硫酸对甲酚酯和短链脂肪酸)。XXD 通过 TLR4/NF-κB/NLRP3 途径改善了 AKI 大鼠肾脏和结肠的病理损伤以及炎症和趋化因子基因丰度,如 IL-17、TNF-α、IL-6、IL-1β、ICAM-1 和 MCP-1,降低了 AKI 评分和肾脏病理损伤,并改善了肠粘膜的炎症浸润。它还修复了粘膜屏障的标志物,包括 claudin-1、occludin 和 ZO-1。与 AKI 组大鼠相比,假组和 AKI 组大鼠在接受 XXD 治疗后,α 多样性明显增加,Chao1 指数明显提高。治疗组则明显逆转了微生物群的这种变化。
{"title":"Protective effect and mechanism of Xiaoyu Xiezhuo decoction on ischemia-reperfusion induced acute kidney injury based on gut-kidney crosstalk.","authors":"Yue Ji, Yunming Xiao, Shipian Li, Yihua Fan, Yuzi Cai, Bo Yang, Hongbo Chen, Shouci Hu","doi":"10.1080/0886022X.2024.2365982","DOIUrl":"https://doi.org/10.1080/0886022X.2024.2365982","url":null,"abstract":"<p><p>This study aimed to explore the mechanism of Xiaoyu Xiezhuo decoction (XXD) on ischemia-reperfusion-induced acute kidney injury (IRI-AKI) using network pharmacology methods and gut microbiota analysis. A total of 1778 AKI-related targets were obtained, including 140 targets possibly regulated by AKI in XXD, indicating that the core targets were mainly enriched in inflammatory-related pathways, such as the IL-17 signaling pathway and TNF signaling pathway. The unilateral IRI-AKI animal model was established and randomly divided into four groups: the sham group, the AKI group, the sham + XXD group, and the AKI + XXD group. Compared with the rats in the AKI group, XXD improved not only renal function, urinary enzymes, and biomarkers of renal damage such as Kim-1, cystatin C, and serum inflammatory factors such as IL-17, TNF-α, IL-6, and IL 1-β, but also intestinal metabolites including lipopolysaccharides, d-lactic acid, indoxyl sulfate, p-cresyl sulfate, and short-chain fatty acids. XXD ameliorated renal and colonic pathological injury as well as inflammation and chemokine gene abundance, such as IL-17, TNF-α, IL-6, IL-1β, ICAM-1, and MCP-1, in AKI rats via the TLR4/NF-κB/NLRP3 pathway, reducing the AKI score, renal pathological damage, and improving the intestinal mucosa's inflammatory infiltration. It also repaired markers of the mucosal barrier, including claudin-1, occludin, and ZO-1. Compared with the rats in the AKI group, the α diversity was significantly increased, and the Chao1 index was significantly enhanced after XXD treatment in both the sham group and the AKI group. The treatment group significantly reversed this change in microbiota.</p>","PeriodicalId":20839,"journal":{"name":"Renal Failure","volume":"46 2","pages":"2365982"},"PeriodicalIF":3.0,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141620757","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Association between hydration status and the risk and all-cause mortality of diabetic kidney disease. 水合状态与糖尿病肾病的风险和全因死亡率之间的关系。
IF 3 3区 医学 Q1 UROLOGY & NEPHROLOGY Pub Date : 2024-12-01 Epub Date: 2024-08-07 DOI: 10.1080/0886022X.2024.2386154
Yayun He, Xia Wu, Yunhai Tang

Background: This cohort study aimed to explore the relationship between hydration status and the risk of diabetic kidney disease (DKD) as well as all-cause death in DKD patients.

Methods: Weighted univariable and multivariable logistic regression models were used to explore the association between hydration status and DKD risk in diabetic population while weighted univariable and multivariable Cox regression models were used to identify the association between hydration status and all-cause mortality in DKD patients. Kaplan-Meier curve was plotted to present the survival probability of patients with different hydration status. Estimates were presented as odds ratio (OR), and hazard ratio (HR) with 95% confidence interval (CI).

Results: The mean follow-up time was 79.74 (±1.89) months. There were 2041 participants with DKD, and 2889 participants without. At the end of the follow-up, 965 participants were alive. The risk of DKD was increased as the increase of osmolarity level (OR = 1.07, 95%CI: 1.05-1.08). The elevated risk of DKD was observed in patients with impending dehydration (OR = 1.49, 95%CI: 1.19-1.85) or current dehydration (OR = 2.69, 95%CI: 2.09-3.46). The association between increased osmolarty level and elevated risk of all-cause mortality in DKD patients was statistically different (HR = 1.02, 95%CI: 1.01-1.03). Current dehydration was correlated with increased all-cause mortality risk in DKD patients (HR = 1.27, 95%CI: 1.01-1.61). Compared to DKD patients with normal hydration, the survival probability of DKD patients with current dehydration was significant lower (p < 0.001).

Conclusion: Increased osmolarity level was associated with increased risk of DKD and elevated risk of all-cause mortality in DKD patients.

背景:这项队列研究旨在探讨水合状态与糖尿病肾病(DKD)患者的风险以及全因死亡之间的关系:这项队列研究旨在探讨水合状态与糖尿病肾病(DKD)风险以及 DKD 患者全因死亡之间的关系:方法: 采用加权单变量和多变量逻辑回归模型探讨糖尿病人群的水合状态与 DKD 风险之间的关系,同时采用加权单变量和多变量 Cox 回归模型确定 DKD 患者的水合状态与全因死亡率之间的关系。绘制 Kaplan-Meier 曲线以显示不同水合状态患者的生存概率。结果显示:平均随访时间为 79.74 小时,平均死亡率为 0.5%:平均随访时间为 79.74 (±1.89) 个月。其中 2041 人患有 DKD,2889 人未患有 DKD。在随访结束时,965 名参与者存活。DKD的风险随着渗透压水平的升高而增加(OR = 1.07,95%CI:1.05-1.08)。在即将脱水(OR = 1.49,95%CI:1.19-1.85)或正在脱水(OR = 2.69,95%CI:2.09-3.46)的患者中观察到 DKD 风险升高。在 DKD 患者中,渗透压水平升高与全因死亡风险升高之间存在统计学差异(HR = 1.02,95%CI:1.01-1.03)。当前脱水与 DKD 患者全因死亡风险增加相关(HR = 1.27,95%CI:1.01-1.61)。与水合正常的 DKD 患者相比,当前脱水的 DKD 患者的生存概率明显降低(p 结论:与水合正常的 DKD 患者相比,当前脱水的 DKD 患者的生存概率明显降低:渗透压水平升高与 DKD 患者的 DKD 风险增加和全因死亡风险升高有关。
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引用次数: 0
Survival rates in comprehensive conservative care compared to dialysis therapy in elderly end-stage kidney disease patients: a propensity score analysis. 老年终末期肾病患者综合保守治疗与透析治疗的存活率比较:倾向得分分析。
IF 3 3区 医学 Q1 UROLOGY & NEPHROLOGY Pub Date : 2024-12-01 Epub Date: 2024-08-30 DOI: 10.1080/0886022X.2024.2396448
Kajohnsak Noppakun, Apichat Tantraworasin, Jiraporn Khorana, Surapon Nochaiwong, Surachet Vongsanim, Phoom Narongkiatikhun, Karn Pongsuwan, Prit Kusirisin, Chalongrat Manoree, Chidchanok Ruengorn

Initiating dialysis therapy in elderly patients with end-stage kidney disease (ESKD) is a challenging decision. We aimed to examine the mortality rates among elderly patients who underwent hemodialysis, peritoneal dialysis, or comprehensive conservative care. This retrospective cohort study included elderly patients (≥70 years) with ESKD who selected their treatment options from January 2008 to December 2018. Patients were categorized into three groups: hemodialysis, peritoneal dialysis, and comprehensive conservative care. The outcome of interest was all-cause mortality analyzed using flexible parametric survival models. Propensity score analysis with inverse probability treatment weighting technique was performed, incorporating age, Charlson Comorbidity Index score, and estimated glomerular filtration rate. The study included 719 elderly ESKD patients with mean age of 78.2 ± 4.9 years, 52.3% were male, and 60.1% died during the median follow-up period of 22.1 months. In a fully adjusted model, patients receiving comprehensive conservative care (n = 50) had higher mortality rates than those receiving hemodialysis (n = 317) (adjusted hazard ratio [HR] 5.60; 95% CI 2.26-13.84, p < 0.001). However, patients who received peritoneal dialysis (n = 352) had a similar mortality rate when compared to those who received hemodialysis (adjusted HR 1.38; 95% CI 0.78-2.44, p = 0.275). The higher mortality rate in the comprehensive conservative care group remained significantly higher than in the hemodialysis group among patients aged ≥80 years (adjusted HR 4.97; 95% CI 1.32-18.80, p = 0.018). Among elderly patients (≥70 years), treatment with dialysis was associated with longer survival rates. This survival advantage persisted in patients aged ≥80 years who chose hemodialysis or peritoneal dialysis over comprehensive conservative care.

对终末期肾病(ESKD)老年患者启动透析治疗是一项具有挑战性的决定。我们旨在研究接受血液透析、腹膜透析或综合保守治疗的老年患者的死亡率。这项回顾性队列研究纳入了2008年1月至2018年12月期间选择治疗方案的ESKD老年患者(≥70岁)。患者被分为三组:血液透析、腹膜透析和综合保守治疗。相关结果为全因死亡率,采用灵活的参数生存模型进行分析。采用反概率治疗加权技术进行倾向评分分析,并纳入年龄、夏尔森综合症指数评分和估计肾小球滤过率。研究纳入了 719 名老年 ESKD 患者,平均年龄为 78.2 ± 4.9 岁,52.3% 为男性,60.1% 的患者在中位 22.1 个月的随访期间死亡。在完全调整模型中,接受综合保守治疗的患者(n = 50)死亡率高于接受血液透析的患者(n = 317)(调整后危险比 [HR] 5.60;95% CI 2.26-13.84,p n = 352),而接受血液透析的患者死亡率与接受综合保守治疗的患者相似(调整后危险比 1.38;95% CI 0.78-2.44,p = 0.275)。在年龄≥80 岁的患者中,综合保守治疗组的死亡率仍明显高于血液透析组(调整后 HR 4.97;95% CI 1.32-18.80,p = 0.018)。在老年患者(≥70 岁)中,透析治疗与较长的存活率相关。在选择血液透析或腹膜透析而非综合保守治疗的≥80岁患者中,这种生存优势依然存在。
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引用次数: 0
Diverse regulated cell death patterns and immune traits in kidney allograft with fibrosis: a prediction of renal allograft failure based on machine learning, single-nucleus RNA sequencing and molecular docking.
IF 3 3区 医学 Q1 UROLOGY & NEPHROLOGY Pub Date : 2024-12-01 Epub Date: 2024-12-04 DOI: 10.1080/0886022X.2024.2435487
Yuqing Li, Jiandong Zhang, Xuemeng Qiu, Yifei Zhang, Jiyue Wu, Qing Bi, Zejia Sun, Wei Wang

Objectives: Post-transplant allograft fibrosis remains a challenge in prolonging allograft survival. Regulated cell death has been widely implicated in various kidney diseases, including renal fibrosis. However, the role of different regulated cell death (RCD) pathways in post-transplant allograft fibrosis remains unclear.

Methods and Results: Microarray transcriptome profiling and single-nuclei sequencing data of post-transplant fibrotic and normal grafts were obtained and used to identify RCD-related differentially expressed genes. The enrichment activity of nine RCD modalities in tissue and cells was examined using single-sample gene set enrichment analysis, and their relations with immune infiltration in renal allograft samples were also assessed. Parenchymal and non-parenchymal cells displayed heterogeneity in RCD activation. Additionally, cell-cell communication analysis was also conducted in fibrotic samples. Subsequently, weighted gene co-expression network analysis and seven machine learning algorithms were employed to identify RCD-related hub genes for renal fibrosis. A 9-gene signature, termed RCD risk score (RCDI), was constructed using the least absolute shrinkage and selection operator and multivariate Cox regression algorithms. This signature showed robust accuracy in predicting 1-, 2-, and 3-year allograft survival status (area under the curve for 1-, 2-, and 3-year were 0.900, 0.877, 0.858, respectively). Immune infiltration analysis showed a strong correlation with RCDI and the nine model genes. Finally, molecular docking simulation suggested rapamycin, tacrolimus and mycophenolate mofetil exhibit strong interactions with core RCD-related receptors.

Conclusions: In summary, this study explored the activation of nine RCD pathways and their relationships with immune traits, identified potential RCD-related hub genes associated with renal fibrosis, and highlighted potential therapeutic targets for renal allograft fibrosis.

{"title":"Diverse regulated cell death patterns and immune traits in kidney allograft with fibrosis: a prediction of renal allograft failure based on machine learning, single-nucleus RNA sequencing and molecular docking.","authors":"Yuqing Li, Jiandong Zhang, Xuemeng Qiu, Yifei Zhang, Jiyue Wu, Qing Bi, Zejia Sun, Wei Wang","doi":"10.1080/0886022X.2024.2435487","DOIUrl":"10.1080/0886022X.2024.2435487","url":null,"abstract":"<p><p><b>Objectives:</b> Post-transplant allograft fibrosis remains a challenge in prolonging allograft survival. Regulated cell death has been widely implicated in various kidney diseases, including renal fibrosis. However, the role of different regulated cell death (RCD) pathways in post-transplant allograft fibrosis remains unclear.</p><p><p><b>Methods and Results:</b> Microarray transcriptome profiling and single-nuclei sequencing data of post-transplant fibrotic and normal grafts were obtained and used to identify RCD-related differentially expressed genes. The enrichment activity of nine RCD modalities in tissue and cells was examined using single-sample gene set enrichment analysis, and their relations with immune infiltration in renal allograft samples were also assessed. Parenchymal and non-parenchymal cells displayed heterogeneity in RCD activation. Additionally, cell-cell communication analysis was also conducted in fibrotic samples. Subsequently, weighted gene co-expression network analysis and seven machine learning algorithms were employed to identify RCD-related hub genes for renal fibrosis. A 9-gene signature, termed RCD risk score (RCDI), was constructed using the least absolute shrinkage and selection operator and multivariate Cox regression algorithms. This signature showed robust accuracy in predicting 1-, 2-, and 3-year allograft survival status (area under the curve for 1-, 2-, and 3-year were 0.900, 0.877, 0.858, respectively). Immune infiltration analysis showed a strong correlation with RCDI and the nine model genes. Finally, molecular docking simulation suggested rapamycin, tacrolimus and mycophenolate mofetil exhibit strong interactions with core RCD-related receptors.</p><p><p><b>Conclusions:</b> In summary, this study explored the activation of nine RCD pathways and their relationships with immune traits, identified potential RCD-related hub genes associated with renal fibrosis, and highlighted potential therapeutic targets for renal allograft fibrosis.</p>","PeriodicalId":20839,"journal":{"name":"Renal Failure","volume":"46 2","pages":"2435487"},"PeriodicalIF":3.0,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11619039/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142780730","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Renal Failure
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