{"title":"Large language models help facilitate the automated synthesis of information on potential pest controllers","authors":"Daan Scheepens, Joseph Millard, Maxwell Farrell, Tim Newbold","doi":"10.1111/2041-210X.14341","DOIUrl":"10.1111/2041-210X.14341","url":null,"abstract":"<p>\u0000 \u0000 </p>","PeriodicalId":208,"journal":{"name":"Methods in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":6.3,"publicationDate":"2024-05-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/2041-210X.14341","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141146419","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Using lineups to evaluate goodness of fit of animal movement models","authors":"John Fieberg, Smith Freeman, Johannes Signer","doi":"10.1111/2041-210X.14336","DOIUrl":"10.1111/2041-210X.14336","url":null,"abstract":"<p>\u0000 \u0000 </p>","PeriodicalId":208,"journal":{"name":"Methods in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":6.6,"publicationDate":"2024-05-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/2041-210X.14336","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140938062","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jeffrey W. Doser, Andrew O. Finley, Marc Kéry, Elise F. Zipkin
有许多建模技术可用于估算动植物种群的丰度。最准确的方法能考虑生态数据中的多种复杂因素，如观测偏差、空间自相关性和物种相关性。然而，目前缺乏用户友好且计算效率高的软件来实现各种模型，尤其是针对大型数据集。我们开发了 spAbundance R 软件包，用于拟合空间明确的贝叶斯单物种和多物种分层距离采样模型、N 混合物模型和广义线性混合模型。该软件包中的模型可以利用近邻高斯过程（Nearest Neighbour Gaussian Processes）考虑空间自相关性，并利用潜在因子方法在多物种模型中考虑物种相关性，从而可以对具有大量地点和/或物种的数据集进行模型拟合。我们提供了三个小故事和三个案例研究，以突出 spAbundance 的功能。我们使用空间显式多物种距离采样模型估算了美国佛罗里达州 16 种鸟类的密度，使用 N 混合模型估算了美国新罕布什尔州黑喉蓝莺（Setophaga caerulescens）的丰度，并使用空间线性混合模型估算了美国大陆森林地上生物量。该软件包可作为生态学家和保护工作者的有用工具，用于改进对种群和群落丰度空间驱动因素的推断和预测。
{"title":"spAbundance: An R package for single-species and multi-species spatially explicit abundance models","authors":"Jeffrey W. Doser, Andrew O. Finley, Marc Kéry, Elise F. Zipkin","doi":"10.1111/2041-210X.14332","DOIUrl":"10.1111/2041-210X.14332","url":null,"abstract":"<p>\u0000 \u0000 </p>","PeriodicalId":208,"journal":{"name":"Methods in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":6.6,"publicationDate":"2024-05-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/2041-210X.14332","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140938060","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
被动声学监测（PAM）已成为调查鸟类的重要工具，对从 PAM 记录中获取鸟类数量和行为信息的方法的需求也在不断增长。鸟类种群的变化是通过计算记录的鸟叫声和发声活动率（VAR，即每次记录时间内的鸟叫声数量）来评估的。然而，鸟类鸣叫的计数方式多种多样，而且根据不同的物种特征，这些鸣叫计数可以让我们对鸟类的数量、发声行为和/或栖息地使用情况有不同的了解。我们的研究有两个目标(1）提出并评估两个基于鸣叫计数的新指数，即检测率（DR，即检测到目标发声存在的 1 分钟记录数）和每分钟最大计数（MAX，即 1 分钟记录中发现的最大鸣叫数）；以及（2）提出一个概念框架，说明对 VAR、DR 和 MAX 的解释如何取决于指数和物种特征。对于具有不同特征的三种新热带鸟类，我们根据尤卡坦半岛（墨西哥）25 个地点的 PAM 数据计算了 VAR、DR 和 MAX，这些地点的人为生境干扰程度各不相同。我们发现这些指数之间存在中度到高度的相关性，与 DR 和 MAX 相比，VAR 的时间变异性更高。我们还发现，生境干扰对三种物种和指数的影响大小不同。我们认为，对于鸣叫行为具有高提示率的物种来说，DR可能是比VAR更可靠的相对丰度指数，而MAX可能适用于估计群居鸟类的家族或鸟群规模。我们的研究结果表明，基于叫声计数开发新的指数对于提出生态假设和评估鸟类丰度与行为的变化具有潜在的实用性。
{"title":"How to count bird calls? Vocal activity indices may provide different insights into bird abundance and behaviour depending on species traits","authors":"Anja Hutschenreiter, Ellen Andresen, Margarita Briseño-Jaramillo, Alejandra Torres-Araneda, Eduardo Pinel-Ramos, Jacqueline Baier, Filippo Aureli","doi":"10.1111/2041-210X.14333","DOIUrl":"10.1111/2041-210X.14333","url":null,"abstract":"<p>\u0000 \u0000 </p>","PeriodicalId":208,"journal":{"name":"Methods in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":6.6,"publicationDate":"2024-05-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/2041-210X.14333","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140938168","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Systematic review and best practices for drone remote sensing of invasive plants","authors":"Kunwar K. Singh, Thilina D. Surasinghe, Amy E. Frazier","doi":"10.1111/2041-210X.14330","DOIUrl":"10.1111/2041-210X.14330","url":null,"abstract":"<p>\u0000 \u0000 </p>","PeriodicalId":208,"journal":{"name":"Methods in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":6.6,"publicationDate":"2024-05-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/2041-210X.14330","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140938169","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Harnessing large language models for coding, teaching and inclusion to empower research in ecology and evolution","authors":"Natalie Cooper, Adam T. Clark, Nicolas Lecomte, Huijie Qiao, Aaron M. Ellison","doi":"10.1111/2041-210X.14325","DOIUrl":"10.1111/2041-210X.14325","url":null,"abstract":"<p>\u0000 \u0000 </p>","PeriodicalId":208,"journal":{"name":"Methods in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":6.3,"publicationDate":"2024-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/2041-210X.14325","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140828677","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Telling mutualistic and antagonistic ecological networks apart by learning their multiscale structure","authors":"Benoît Pichon, Rémy Le Goff, Hélène Morlon, Benoît Perez-Lamarque","doi":"10.1111/2041-210X.14328","DOIUrl":"10.1111/2041-210X.14328","url":null,"abstract":"<p>\u0000 \u0000 </p>","PeriodicalId":208,"journal":{"name":"Methods in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":6.6,"publicationDate":"2024-04-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/2041-210X.14328","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140800938","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Thomas Ruf, Claudio Signer, Walter Arnold, Sebastian G. Vetter, Claudia Bieber
过去几十年来，人们对长期心率记录，尤其是自由生活动物的心率记录越来越感兴趣。这主要是因为组织的大部分新陈代谢活动都是基于心脏的氧气输送。然而，使用记录仪记录的人类和动物的心率或其他生理变量往往含有噪声。有时会通过人工或滤波器剔除虚假测量值，滤波器会根据信号的形状或频率剔除变量。我们介绍了一个 R 软件包 boxfilter，它能让用户通过计算滑动窗口内近邻的数量来消除噪声。根据所选的截止值，邻域比例较低的焦点将作为噪声被剔除。所有三个参数，即窗口宽度和高度以及截止值，都可以自动计算。窗口宽度和高度以及截断值这三个参数都可以自动计算。截断值的选择至关重要，超过这个值的数据点将被丢弃。当然，软件包方框滤波器无法解决完全错误的测量所造成的问题。与人眼一样，该滤波器也会偏好那些属于某种模式（如密集带）的点，而剔除孤立的值。除心率外，方框过滤器还可用于其他非瞬时变化的测量值，如体温、血压或睡眠参数。
{"title":"Filtering heart rates using data densities: The boxfilter R package","authors":"Thomas Ruf, Claudio Signer, Walter Arnold, Sebastian G. Vetter, Claudia Bieber","doi":"10.1111/2041-210X.14301","DOIUrl":"10.1111/2041-210X.14301","url":null,"abstract":"<p>\u0000 \u0000 </p>","PeriodicalId":208,"journal":{"name":"Methods in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":6.6,"publicationDate":"2024-04-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/2041-210X.14301","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140661734","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Meghan A. Balk, John Bradley, M. Maruf, Bahadir Altintaş, Yasin Bakiş, Henry L. Bart Jr, David Breen, Christopher R. Florian, Jane Greenberg, Anuj Karpatne, Kevin Karnani, Paula Mabee, Joel Pepper, Dom Jebbia, Thibault Tabarin, Xiaojun Wang, Hilmar Lapp
{"title":"A FAIR and modular image-based workflow for knowledge discovery in the emerging field of imageomics","authors":"Meghan A. Balk, John Bradley, M. Maruf, Bahadir Altintaş, Yasin Bakiş, Henry L. Bart Jr, David Breen, Christopher R. Florian, Jane Greenberg, Anuj Karpatne, Kevin Karnani, Paula Mabee, Joel Pepper, Dom Jebbia, Thibault Tabarin, Xiaojun Wang, Hilmar Lapp","doi":"10.1111/2041-210X.14327","DOIUrl":"10.1111/2041-210X.14327","url":null,"abstract":"<p>\u0000 \u0000 </p>","PeriodicalId":208,"journal":{"name":"Methods in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":6.6,"publicationDate":"2024-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/2041-210X.14327","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140676553","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A method for sampling the living wood microbiome","authors":"Wyatt Arnold, Jonathan Gewirtzman, Peter A. Raymond, Mark A. Bradford, Claire Butler, Jordan Peccia","doi":"10.1111/2041-210X.14311","DOIUrl":"10.1111/2041-210X.14311","url":null,"abstract":"<p>\u0000 \u0000 </p>","PeriodicalId":208,"journal":{"name":"Methods in Ecology and Evolution","volume":null,"pages":null},"PeriodicalIF":6.6,"publicationDate":"2024-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/2041-210X.14311","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140799754","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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