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Tools and databases for non-coding RNAs. 非编码rna的工具和数据库。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-05-31 DOI: 10.1016/bs.pmbts.2025.05.003
Akshaykumar Zawar, Srinka Datta, Rishita Rathi, Rituja Shinde, Anushka Kalamkar, Neeraj Dangi, Poonam Deshpande

Non-coding RNAs (ncRNAs) play a crucial role in various cellular processes, challenging the earlier notion that non-coding regions of the genome are merely "junk DNA." Advances in molecular biology and sequencing technologies have revealed that these regions contain essential genetic elements, including ncRNAs, which influence gene regulation and other biological functions. As the significance of ncRNAs in human health and disease becomes increasingly clear, researchers have developed methods to identify, annotate, and classify these molecules into distinct types. Additionally, a growing interest has emerged in studying genetic variations within ncRNA genes and their potential implications in disease development. Understanding these variations can provide insights into how ncRNAs contribute to gene regulation and cellular function. This article explores the current landscape of ncRNA research, highlighting the latest techniques for detecting and identifying different classes of ncRNAs. Furthermore, it discusses computational tools and databases available for annotating ncRNAs and analyzing their functions across various biological processes. By integrating experimental and computational approaches, researchers can gain a deeper understanding of ncRNA roles, paving the way for potential therapeutic applications.

非编码rna (ncRNAs)在各种细胞过程中发挥着至关重要的作用,挑战了先前基因组非编码区域仅仅是“垃圾DNA”的观念。分子生物学和测序技术的进步表明,这些区域含有重要的遗传元件,包括影响基因调控和其他生物功能的ncrna。随着ncrna在人类健康和疾病中的重要性日益明确,研究人员已经开发出识别、注释和将这些分子分类为不同类型的方法。此外,研究ncRNA基因内的遗传变异及其在疾病发展中的潜在影响也日益引起人们的兴趣。了解这些变异可以帮助我们深入了解ncrna如何参与基因调控和细胞功能。本文探讨了ncRNA研究的现状,重点介绍了检测和鉴定不同类别ncRNA的最新技术。此外,它还讨论了可用于注释ncrna并分析其在各种生物过程中的功能的计算工具和数据库。通过整合实验和计算方法,研究人员可以更深入地了解ncRNA的作用,为潜在的治疗应用铺平道路。
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引用次数: 0
Advancements in wearable biosensors: Transforming cardiovascular health monitoring and disease management. 可穿戴生物传感器的进展:改变心血管健康监测和疾病管理。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-05-20 DOI: 10.1016/bs.pmbts.2025.05.006
Perla Boutros, Nour Kassem, Sandra Barteit

Wearable biosensors enable continuous, non-invasive monitoring of cardiovascular parameters, including heart rate, heart rate variability, blood pressure, and thoracic fluid status. Utilizing technologies such as photoplethysmography, electrocardiography and piezoelectric sensing, these devices capture essential haemodynamic and arrhythmias data, facilitating early diagnosis and intervention. Advanced indices, such as pulse wave velocity and heart sounds, provide insights into arterial stiffness and valvular function, enhancing clinical assessment. Artificial intelligence and machine learning further refine data interpretation, generating predictive insights for personalized health. By integrating multiple sensors, these devices provide a comprehensive, individualized assessment, advancing personalized health and real-time disease management while empowering individuals with greater control over their health and enhancing data collection for improved diagnostics and treatment.

可穿戴生物传感器可实现对心血管参数的连续、无创监测,包括心率、心率变异性、血压和胸腔液体状态。利用光电容积脉搏波、心电图和压电传感等技术,这些设备可以捕获基本的血流动力学和心律失常数据,促进早期诊断和干预。先进的指标,如脉搏波速度和心音,提供了深入了解动脉僵硬和瓣膜功能,加强临床评估。人工智能和机器学习进一步完善了数据解释,为个性化健康提供预测性见解。通过集成多个传感器,这些设备提供全面、个性化的评估,推进个性化健康和实时疾病管理,同时使个人能够更好地控制自己的健康,并加强数据收集,以改进诊断和治疗。
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引用次数: 0
Advances in materials for wearable biosensors. 可穿戴生物传感器材料的研究进展。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-05-24 DOI: 10.1016/bs.pmbts.2025.05.009
Dhruvesh Maiya, Tvarit Patel, Alok Pandya

Wearable biosensors have emerged as transformative instruments for continuous, non-invasive health monitoring, providing real-time analysis of biomarkers in biofluids such as sweat, interstitial fluid, and saliva. This chapter offers a comprehensive overview of the pivotal role of biomaterials in the design and functionality of wearable biosensors. It examines the selection criteria for biocompatible materials, emphasizing properties such as flexibility, stretchability, conductivity, and long-term stability. The discussion categorizes advanced materials, including hydrogels, polyurethanes, carbon-based nanomaterials, metallic nanoparticles, and microneedles, and evaluates their applications in biosensing platforms for glucose, pH, and metal ion detection. Through case studies and figure-integrated explanations, the chapter highlights innovations such as smart hydrogel contact lenses, self-powered alcohol biosensors, and closed-loop microneedle patches for autonomous insulin delivery. It further explores key challenges, including biofluid variability, sensor biocompatibility, and the correlation of biofluid biomarkers with blood concentrations. Finally, the chapter underscores future directions involving AI integration, federated learning, and next-generation biomaterials like biodegradable polymers and stretchable composites. By bridging materials science with digital health technologies, wearable biosensors are poised to revolutionize personalized medicine, enabling early diagnosis, disease prevention, and optimized therapeutic interventions.

可穿戴生物传感器已经成为一种变革性的工具,用于连续、无创的健康监测,提供对汗液、间质液和唾液等生物流体中的生物标志物的实时分析。本章全面概述了生物材料在可穿戴生物传感器的设计和功能中的关键作用。它检查了生物相容性材料的选择标准,强调诸如柔韧性,可拉伸性,导电性和长期稳定性等特性。讨论对先进材料进行了分类,包括水凝胶、聚氨酯、碳基纳米材料、金属纳米颗粒和微针,并评估了它们在葡萄糖、pH和金属离子检测的生物传感平台中的应用。通过案例研究和数字综合解释,本章重点介绍了智能水凝胶隐形眼镜、自供电酒精生物传感器和用于自主胰岛素输送的闭环微针贴片等创新。它进一步探讨了关键挑战,包括生物流体变异性、传感器生物相容性以及生物流体生物标志物与血液浓度的相关性。最后,本章强调了未来的发展方向,包括人工智能集成、联邦学习和下一代生物材料,如可生物降解聚合物和可拉伸复合材料。通过将材料科学与数字健康技术相结合,可穿戴生物传感器有望彻底改变个性化医疗,实现早期诊断、疾病预防和优化治疗干预。
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引用次数: 0
Wearable biosensors for cancer detection and monitoring. 用于癌症检测和监测的可穿戴生物传感器。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-05-24 DOI: 10.1016/bs.pmbts.2025.05.005
Navid Kashaninejad, Prabuddha De Saram, Mohamed A Abdelfattah, Azeez Bakare, Hoang Huy Vu

Wearable biosensors have emerged as game changers in healthcare, particularly for cancer detection and monitoring. Continuously sensing physiological and biochemical markers improves cancer diagnosis and treatment significantly. Conventional diagnostic methods, such as biopsies and imaging, are invasive, expensive, and logistically challenging, limiting their frequency and accessibility. Over the past decade, advances in microfluidics and surface engineering have expanded the capabilities of wearable biosensors. Readily accessible body fluids, such as sweat, saliva, tears, and interstitial fluid (ISF), are now recognized as valuable, non-invasive sources of tumor biomarkers. These fluids provide critical insights into tumor progression and therapy response, offering a patient-friendly alternative to traditional diagnostics. The integration of cutting-edge materials, advanced sensing technologies, and microfluidics has dramatically enhanced the sensitivity and specificity of wearable biosensors. This progress paves the way for personalized and preventive healthcare, improving patient convenience and reducing clinical visits and invasive procedures. This chapter explores the fundamental design principles, practical applications, and existing challenges of wearable biosensors. By addressing these issues, wearable biosensors can play a transformative role in early cancer detection and personalized treatment, ultimately improving patient outcomes.

可穿戴生物传感器已经成为医疗保健领域的游戏规则改变者,特别是在癌症检测和监测方面。持续感知生理生化标志物可显著提高肿瘤的诊断和治疗效果。传统的诊断方法,如活组织检查和成像,是侵入性的,昂贵的,后勤挑战,限制了它们的频率和可及性。在过去的十年中,微流体和表面工程的进步扩大了可穿戴生物传感器的能力。容易获得的体液,如汗液、唾液、眼泪和间质液(ISF),现在被认为是有价值的、非侵入性的肿瘤生物标志物来源。这些液体提供了对肿瘤进展和治疗反应的关键见解,为患者提供了传统诊断的替代方案。尖端材料、先进传感技术和微流体技术的融合极大地提高了可穿戴生物传感器的灵敏度和特异性。这一进展为个性化和预防性医疗保健铺平了道路,提高了患者的便利性,减少了临床就诊和侵入性手术。本章探讨了可穿戴生物传感器的基本设计原理、实际应用和现有挑战。通过解决这些问题,可穿戴生物传感器可以在早期癌症检测和个性化治疗中发挥变革性作用,最终改善患者的治疗效果。
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引用次数: 0
Wearable privacy. 可穿戴的隐私。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-07-17 DOI: 10.1016/bs.pmbts.2025.06.005
Vivian Genaro Motti, Huining 'Selina' Feng

Wearable technology has a promising potential to transform users' lives by continuously collecting data and providing convenient services on demand. Yet, there is also a large potential to breach users' privacy compromising the confidentiality of sensitive data. The lack of privacy regulations is caused by a limited understanding of how to control data collection, access and sharing. Also, the lack of privacy regulations for wearables hinders effective controls for data sharing. This issue is further complicated due to the lack of policies governing the use of wearables in public places, the novelty of such devices and their services, as well as the challenges to identify the threats to data misuse. In this chapter, we examine the landscape of wearable technology focusing on user privacy and data protection. We describe the implications of data disclosure, discussing risks and benefits involved. We provide scenarios where these issues arise and discuss technical solutions including data anonymization and access controls. We review solutions designed to protect users' privacy rights, evaluating their effectiveness and limitations. Lastly, we present solutions created to protect users' privacy. The chapter concludes by outlining a roadmap for future research and development in wearable privacy. We highlight open questions for next-generation devices and provide practical recommendations for end users to safeguard their privacy. Key areas for future research include enhancing user consent mechanisms and improving transparency in data practices. By addressing these gaps, we aim to better protect user privacy in an increasingly interconnected world.

可穿戴技术通过不断收集数据和按需提供便利的服务,具有改变用户生活的巨大潜力。然而,也有很大的可能会破坏用户的隐私,损害敏感数据的机密性。隐私法规的缺乏是由于对如何控制数据收集、访问和共享的理解有限造成的。此外,可穿戴设备隐私法规的缺乏也阻碍了对数据共享的有效控制。由于缺乏管理在公共场所使用可穿戴设备的政策,这些设备及其服务的新颖性,以及识别数据滥用威胁的挑战,这个问题变得更加复杂。在本章中,我们将研究可穿戴技术的前景,重点关注用户隐私和数据保护。我们描述了数据披露的含义,讨论了所涉及的风险和利益。我们提供了出现这些问题的场景,并讨论了包括数据匿名化和访问控制在内的技术解决方案。我们审查旨在保护用户隐私权的解决方案,评估其有效性和局限性。最后,我们提出了保护用户隐私的解决方案。本章最后概述了未来可穿戴隐私研究和发展的路线图。我们强调下一代设备的开放问题,并为最终用户提供实用的建议,以保护他们的隐私。未来研究的关键领域包括加强用户同意机制和提高数据实践的透明度。通过解决这些差距,我们的目标是在日益互联的世界中更好地保护用户隐私。
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引用次数: 0
The ethical and regulatory landscape of wearable, ingestible, and implantable technologies in the United States. 美国可穿戴、可食用和可植入技术的伦理和监管格局。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-07-19 DOI: 10.1016/bs.pmbts.2025.06.004
Ishaan Jain, George S Sellers, Armaan Jain, Astha Agarwal, Raju S Davé

Biosensing technologies, including wearables, ingestibles, and implantables, are transforming modern healthcare by enabling real-time monitoring and precise personalized treatment. As these technologies advance, ensuring their safety, efficacy, and ethical deployment remains paramount. This chapter explores the regulatory framework that governs biosensing devices in the United States, detailing premarket approval pathways, postmarket surveillance, and emerging regulatory incentives that balance innovation with patient protection. The discussion extends beyond compliance to address critical ethical considerations, including data privacy, informed consent, patient data ownership, and equitable access. By examining case studies of successful and failed biosensing devices, this chapter provides a comprehensive analysis of the evolving landscape, offering guidance for manufacturers, policymakers, and healthcare providers. A proactive approach to regulation and ethics will be essential to ensuring biosensing technologies enhance healthcare outcomes while maintaining public trust.

生物传感技术,包括可穿戴设备、可摄取设备和可植入设备,通过实现实时监测和精确的个性化治疗,正在改变现代医疗保健。随着这些技术的进步,确保其安全性、有效性和道德部署仍然是最重要的。本章探讨了管理美国生物传感设备的监管框架,详细介绍了上市前批准途径、上市后监督以及平衡创新与患者保护的新兴监管激励措施。讨论超出了合规性,涉及关键的伦理考虑,包括数据隐私、知情同意、患者数据所有权和公平获取。通过检查成功和失败的生物传感设备的案例研究,本章提供了不断发展的景观的全面分析,为制造商,政策制定者和医疗保健提供者提供指导。积极主动的监管和伦理方法对于确保生物传感技术在保持公众信任的同时提高医疗保健成果至关重要。
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引用次数: 0
Artificial intelligence and machine learning heuristics for discovery of ncRNAs. 人工智能和机器学习启发式发现ncrna。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-01-22 DOI: 10.1016/bs.pmbts.2025.01.002
Alfredo Benso, Gianfranco Politano

Artificial intelligence (AI) has emerged as a powerful tool in molecular biology, significantly advancing the study of long non-coding RNAs (lncRNAs). This chapter examines the application of AI techniques, including machine learning (ML) and deep learning (DL), in predicting lncRNA functions, identifying disease associations, and annotating protein interactions. The discussion covers key methodologies such as supervised and unsupervised ML algorithms, recurrent neural networks (RNNs), convolutional neural networks (CNNs), and transformer-based models. A detailed description of a deep learning pipeline for functional annotation of lncRNA-binding proteins (lncRBPs) is provided, highlighting challenges in dataset preparation, model design, and usability. Integrating experimental validation with computational predictions is emphasized as a pathway to bridge AI-driven insights with biological understanding.

人工智能(AI)已经成为分子生物学的一个强大工具,极大地推动了长链非编码rna (lncRNAs)的研究。本章探讨了人工智能技术在预测lncRNA功能、识别疾病关联和注释蛋白质相互作用方面的应用,包括机器学习(ML)和深度学习(DL)。讨论涵盖了关键方法,如监督和无监督ML算法、循环神经网络(rnn)、卷积神经网络(cnn)和基于变压器的模型。提供了lncrna结合蛋白(lncrbp)功能注释的深度学习管道的详细描述,突出了数据集准备,模型设计和可用性方面的挑战。将实验验证与计算预测相结合被强调为连接人工智能驱动的见解与生物学理解的途径。
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引用次数: 0
Wearable biosensors for autoimmune disorders. 用于自身免疫性疾病的可穿戴生物传感器
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-05-19 DOI: 10.1016/bs.pmbts.2025.05.008
Jyot Thesia, Alok Pandya

Millions of people are affected worldwide by autoimmune disorders, including rheumatoid arthritis, lupus, multiple sclerosis and others, whose immune attacks also do not occur in a straightforward or stable manner. Dynamic changes of disease progression and treatment efficacy are not regularly monitored or diagnosed using conventional diagnostic and monitoring techniques. Wearable biosensors (WBS) provide a transformational solution for continuous, minimally invasive biomarker monitoring including cytokines, autoantibodies and acute phase proteins. This paper reviews the pathophysiology underlying WBS in autoimmune disease management, the relevant biomarkers, and the recent advances in biosensor technology. Sensitivity, specificity, stability and biocompatibility issues have also been addressed. Towards the future, our vision includes future prospects in big data analytics and artificial intelligence for predictive modeling, material science advancements for improving sensor performance, noninvasive monitoring technologies, and omics integration for a complete health status of the patient. These innovations have the ability to affect patients suffering from autoimmune disease in a personalized, data driven, and real time manner.

全世界有数百万人受到自身免疫性疾病的影响,包括类风湿性关节炎、狼疮、多发性硬化症和其他疾病,这些疾病的免疫攻击也不是以直接或稳定的方式发生。疾病进展和治疗效果的动态变化没有使用常规诊断和监测技术进行定期监测或诊断。可穿戴生物传感器(WBS)为持续的、微创的生物标志物监测提供了一种变革性的解决方案,包括细胞因子、自身抗体和急性期蛋白。本文综述了自身免疫性疾病管理中WBS的病理生理学基础、相关生物标志物以及生物传感器技术的最新进展。敏感性、特异性、稳定性和生物相容性问题也得到了解决。展望未来,我们的愿景包括预测建模的大数据分析和人工智能的未来前景,提高传感器性能的材料科学进步,无创监测技术,以及用于患者完整健康状态的组学集成。这些创新能够以个性化、数据驱动和实时的方式影响患有自身免疫性疾病的患者。
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引用次数: 0
Non-coding RNAs and their integrated biological networks. 非编码rna及其整合的生物网络。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2025-06-06 DOI: 10.1016/bs.pmbts.2025.05.014
Bilal Ahmed Abbasi, Renuka Suravajhala, V S Sundararajan, Jayaraman Valadi, Prashanth Suravajhala

Non-coding RNAs (ncRNAs) regulate gene expression by acting as transcriptional modulators, either via binding to specific stretches of DNA sequences/proteins, or by interacting with transcription factors. Previous genome scans often dismissed ncRNAs as transcriptional noise; recent studies have established them as critical regulators in cellular function, epigenetic alterations, and RNA stability, far exceeding beyond their originally perceived passive roles. In this chapter, we explore the regulatory functions of ncRNAs, the complex interplay between coding and non-coding gene networks, and review available in silico tools/methods for ncRNA identification, annotation and analysis. Moreover, we highlight key studies and case examples demonstrating how ncRNAs contribute to disease pathophysiology particularly focusing on cancer, and neurological disorders illustrating their functional and clinical significance.

非编码rna (ncRNAs)通过与DNA序列/蛋白质的特定片段结合或与转录因子相互作用,作为转录调节剂调节基因表达。以前的基因组扫描通常将ncrna视为转录噪声而不予考虑;最近的研究已经确定它们是细胞功能、表观遗传改变和RNA稳定性的关键调节因子,远远超出了它们最初被认为的被动作用。在本章中,我们探讨了ncRNA的调控功能,编码和非编码基因网络之间的复杂相互作用,并回顾了现有的ncRNA鉴定、注释和分析的计算机工具/方法。此外,我们重点介绍了一些关键研究和案例,这些研究和案例展示了ncRNAs如何促进疾病病理生理学,特别是癌症,以及神经系统疾病,说明了它们的功能和临床意义。
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引用次数: 0
Daptomycin: Mechanism of action, mechanisms of resistance, synthesis and structure-activity relationships. 达托霉素:作用机制、耐药机制、合成及构效关系。
3区 生物学 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 Epub Date: 2024-04-27 DOI: 10.1016/bs.pmbts.2024.04.003
Scott D Taylor, Ryan Moreira

Daptomycin is a cyclic lipodepsipeptide antibiotic that is a mainstay for the treatment of serious infections caused by Gram-positive bacteria, including methicillin-resistant Streptococcus aureus and vancomycin resistant enterococci. It is one of the so-called last-resort antibiotics that are used to tackle life-threatening infections that do not respond to first-line treatments. However, resistance to daptomycin is eroding its clinical efficacy motivating the design and/or discovery of analogues that overcome resistance. The strategy of antibiotic analogue synthesis has been used to overcome bacterial resistance to many classes of antibiotics such as the β-lactams. Pursuing this strategy with daptomycin requires a detailed understanding of daptomycin's action mechanism and synthesis. Here, we discuss the action mechanism of daptomycin in a holistic manner and expand this discussion to rationalize conferred modes of resistance. Synthetic efforts, both chemical and biological, are discussed in detail and the structure-activity relationship emanating from these works is distilled into a usable model that can guide the design of new daptomycin analogues.

达托霉素是一种环脂降肽抗生素,是治疗革兰氏阳性细菌(包括耐甲氧西林金黄色链球菌和耐万古霉素肠球菌)引起的严重感染的主要药物。它是所谓的最后手段抗生素之一,用于治疗危及生命的感染,这些感染对一线治疗无效。然而,对达托霉素的耐药性正在削弱其临床疗效,促使设计和/或发现克服耐药性的类似物。抗生素类似物合成的策略已被用于克服细菌对许多类抗生素的耐药性,如β-内酰胺类抗生素。对达托霉素实施这一策略需要详细了解达托霉素的作用机制和合成。在这里,我们以一种整体的方式讨论达托霉素的作用机制,并将这一讨论扩展到使赋予的耐药模式合理化。详细讨论了化学和生物合成方面的努力,并从这些工作中提炼出结构-活性关系,形成一个可用的模型,可以指导新的达托霉素类似物的设计。
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引用次数: 0
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