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The Methylation Level of a CpG Site in the Human Interleukin-1β Promoter Reflects Both Current and Past Inflammation 人类白细胞介素-1β Promoter 中一个 CpG 位点的甲基化水平反映了当前和过去的炎症情况
IF 0.6 4区 生物学 Q4 GENETICS & HEREDITY Pub Date : 2024-07-27 DOI: 10.1134/s1022795424700406
A. K. Gribkova, A. E. Bigildeev, A. K. Shaytan

Abstract

Viral infections, including SARS-CoV-2, are accompanied by signs of systemic inflammation, which can cause long-term sequela for the patient. Time-stable changes in the organism may be caused by epigenetic shifts inherited in a series of cell divisions, in particular, by changes in the DNA methylation profile in cells of various organs and tissues in response to proinflammatory cytokines. IL1B is a key inflammatory factor, and it was shown that CpG methylation level in its promoter can change upon pro-inflammatory stimuli, and that it was associated with significant increase in IL1B expression. In particular, a specific CpG site in the promoter of the IL1B gene located 299 bp upstream from the transcription start site (CpG3) was previously shown to be an important player in these processes. In this study, we examined methylation/demethylation levels of this CpG3 in publicly available genome-wide methylation studies. A total of 15 dataset were analyzed that comprised data from stromal cells in normal and inflammation-associated states, immune cells of healthy young and aging donors, patients during COVID-19 and after recovery. The level of CpG3 demethylation was found to be higher in osteoarthritis samples of cartilage as compared to healthy donors in one dataset. In blood samples of patients with rheumatoid arthritis CpG3 demethylation was also found to be statistically higher than in healthy donors. In COVID-19 studies, blood samples obtained from patients with severe symptoms had higher CpG3 demethylation levels compared to samples obtained from patients with mild symptoms and controls. The level of CpG3 demethylation increased with age in healthy people as judged by whole blood samples. The same dependency was seen for in vitro cultures of mesenchymal cells obtained from healthy donors. Taken together we showed that demethylation level of a single CpG site in IL1B promoter increases in several cell types due to conditions associated with local and systemic inflammation, including SARS-CoV-2 infection, and in aging. These data suggest a possibility that a history of conditions associated with inflammation within an organism may be recorded, preserved, and encoded in its DNA methylation pattern. While the specificity of these “records of inflammation” is an open question, decoding the history of pathological events associated with inflammation that had been faced by the organism is an intriguing possibility.

摘要 包括 SARS-CoV-2 在内的病毒感染会伴有全身性炎症症状,并可能给患者带来长期后遗症。机体内时间稳定的变化可能是由一系列细胞分裂过程中遗传的表观遗传学变化引起的,特别是由各器官和组织细胞在促炎细胞因子作用下的 DNA 甲基化图谱变化引起的。研究表明,IL1B 启动子中的 CpG 甲基化水平会在促炎刺激下发生变化,并且与 IL1B 表达的显著增加有关。特别是,IL1B 基因启动子中位于转录起始位点上游 299 bp 处的一个特定 CpG 位点(CpG3)以前曾被证明在这些过程中起着重要作用。在本研究中,我们在公开的全基因组甲基化研究中考察了该 CpG3 的甲基化/去甲基化水平。我们共分析了 15 个数据集,其中包括正常和炎症相关状态下的基质细胞、健康年轻和衰老供体的免疫细胞、COVID-19 期间和康复后患者的数据。在一个数据集中发现,与健康供体相比,骨关节炎软骨样本中的 CpG3 去甲基化水平更高。在类风湿性关节炎患者的血液样本中,也发现 CpG3 去甲基化水平在统计学上高于健康供体。在 COVID-19 研究中,与症状轻微的患者和对照组相比,症状严重的患者血液样本的 CpG3 去甲基化水平更高。根据全血样本判断,健康人的 CpG3 去甲基化水平随着年龄的增长而增加。从健康捐献者处获得的间充质细胞体外培养也显示出同样的依赖性。综上所述,我们发现 IL1B 启动子中单个 CpG 位点的去甲基化水平在几种细胞类型中会随着局部和全身炎症(包括 SARS-CoV-2 感染)以及衰老而增加。这些数据表明,生物体内与炎症相关的历史可能会被记录、保存并编码在其 DNA 甲基化模式中。虽然这些 "炎症记录 "的特异性是一个未决问题,但解码生物体曾面临的与炎症相关的病理事件的历史是一种引人入胜的可能性。
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引用次数: 0
Genetic Structure of Wolf Populations in North Eurasia: The Effect of Exclusion of Closely Related Individuals from Analysis 北欧亚大陆狼种群的遗传结构:分析中排除近亲个体的影响
IF 0.6 4区 生物学 Q4 GENETICS & HEREDITY Pub Date : 2024-07-27 DOI: 10.1134/s1022795424700327
P. A. Kazimirov, Yu. S. Belokon, M. M. Belokon, A. Ya. Bondarev, A. V. Davydov, E. S. Zakharov, S. V. Leontyev, D. V. Politov

Abstract

Based on 20 autosomal microsatellite markers, the results of analysis of the genetic structure and spatial autocorrelation in the populations of grey wolf (Canis lupus Linnaeus, 1758) on the territory of the Russian Federation and the Republic of Kazakhstan are described. Using molecular markers, hidden genealogical patterns are revealed, which have the most pronounced effect on distances up to 150 km but may be traced over much wider spaces, up to 700–1600 km. Our research has shown that identification and exclusion of closely related genotypes has limited effect on the results of the analysis of intrapopulation genetic diversity. Meanwhile, this procedure is recommended for a more adequate assessment of the population structure since it allows for streamlining some statistical approaches. Thus, the obtained data demonstrate the integrating effect of natal migration, which works against the differential effect of philopatry. Finally, it is also shown that the exclusion of closely related individuals can lead to lower values of genetic distances between populations.

摘要 基于 20 个常染色体微卫星标记,描述了对俄罗斯联邦和哈萨克斯坦共和国境内灰狼(Canis lupus Linnaeus, 1758)种群的遗传结构和空间自相关性的分析结果。利用分子标记揭示了隐藏的系谱模式,这种模式对 150 公里以内的距离具有最明显的影响,但可追溯到 700-1600 公里的更广阔空间。我们的研究表明,识别和排除近缘基因型对种群内遗传多样性分析结果的影响有限。同时,我们建议采用这种方法对种群结构进行更充分的评估,因为它可以简化一些统计方法。因此,所获得的数据证明了产地迁移的整合效应,这种效应与集邮的差异效应相抵消。最后,数据还表明,排除亲缘关系密切的个体会导致种群间遗传距离值降低。
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引用次数: 0
Expression of the β1-Adrenoreceptor Gene in Patients with Atrial Fibrillation before and after Surgical Treatment 心房颤动患者手术治疗前后的 β1 肾上腺素受体基因表达情况
IF 0.6 4区 生物学 Q4 GENETICS & HEREDITY Pub Date : 2024-07-27 DOI: 10.1134/s1022795424700388
V. O. Popova, E. F. Muslimova, T. Yu. Rebrova, E. A. Archakov, R. E. Batalov, S. A. Afanasiev

Abstract

Atrial fibrillation (AF) is one of the most frequent cardiac arrhythmias and leads to heart failure. Excessive sympathetic activity aggravates arrhythmogenic processes at the cellular and tissue levels. Hypersympathicotonia leads to desensitization of β1-adrenoreceptors (β1-AR), and negative regulation develops until the synthesis of new receptors stops. Desensitization processes may be indirectly reflected in an increase or decrease in the expression of the ADRB1 gene encoding β1-AR. The level of relative expression of the β1-AP ADRB1 gene in leukocytes of 52 patients with different forms of AF was analyzed in dynamics: before treatment, 3 days, and 3 and 12 months after ablation. Before ablation, expression was reduced in patients with persistent AF compared to groups with other forms of AF (р = 0.026). The study of dynamics revealed a significant decrease in the level of expression in patients with paroxysmal AF at the point of 3 days compared with the level before ablation (p = 0.003), with a further increase in values to the baseline at the point of 12 months (p = 0.021) relative to the point of 3 days. In patients with persistent AF, the expression level significantly increased 3 months after ablation (p = 0.046) compared to the level before surgery. Patients with long-term persistent AF after ablation had a tendency toward a decrease in expression.

摘要 心房颤动(房颤)是最常见的心律失常之一,会导致心力衰竭。过度的交感神经活动会在细胞和组织水平上加剧心律失常的发生过程。交感神经功能亢进会导致β1-肾上腺素受体(β1-AR)脱敏,形成负调节,直至新受体的合成停止。脱敏过程可间接反映在编码 β1-AR 的 ADRB1 基因表达的增减上。研究人员对 52 名不同形式房颤患者白细胞中 β1-AP ADRB1 基因的相对表达水平进行了动态分析:治疗前、治疗后 3 天、消融后 3 个月和 12 个月。在消融前,与其他形式的房颤组相比,持续性房颤患者的表达量减少(р = 0.026)。动态研究显示,与消融前的水平相比,阵发性房颤患者在 3 天时的表达水平显著下降(p = 0.003),相对于 3 天时的水平,12 个月时的表达值进一步上升至基线(p = 0.021)。在持续性房颤患者中,消融术后 3 个月的表达水平比术前水平显著增加(p = 0.046)。消融术后长期持续性房颤患者的表达水平呈下降趋势。
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引用次数: 0
The Role of Various Subunits of the INO80 Remodeling Complex in Chromatin Repair Assembly in Yeast Saccharomyces cerevisiae INO80 重塑复合物各亚基在酵母染色质修复组装中的作用
IF 0.6 4区 生物学 Q4 GENETICS & HEREDITY Pub Date : 2024-07-27 DOI: 10.1134/s1022795424700303
T. A. Evstyukhina, E. A. Alekseeva, I. I. Skobeleva, V. T. Peshekhonov, V. G. Korolev

Abstract

Chromatin repair assembly is an important step in maintaining genome stability. The correct assembly of chromatin is provided by histone chaperones, whose dysfunction can lead to the development of various forms of cancer and a number of hereditary diseases in humans. The effect of remodeling factors completes chromatin repair. The yeast chromatin remodeling complex INO80 plays an important role in chromatin architecture. We used induced mutagenesis and real-time PCR to study the role of INO80 in chromatin repair assembly. In double mutants ies5Δ hsm3Δ (hif1Δ), defects in the structure of nucleosomes caused by mutations hsm3Δ and hif1Δ lead to hypersensitivity of cells to UV radiation and the disappearance of hsm3- and hif1-specific mutagenesis. Double mutants carrying the nhp10Δ mutation and hsm3Δ or hif1Δ mutations were indistinguishable from a single mutant in terms of the lethal effect of UV irradiation, but the high UV-induced mutagenesis characteristic of all mutations disappeared. Thus, it gas been found that mutations in the genes controlling the subunits of the INO80 complex can exhibit strong interactions with mutations in histone chaperone genes. The hypothesis that the Him1 protein performs a chaperone function in the process of chromatin repair assembly has been confirmed.

摘要 染色质修复组装是维持基因组稳定性的重要步骤。组蛋白伴侣提供了染色质的正确组装,而组蛋白伴侣的功能障碍可导致各种癌症和一些人类遗传性疾病的发生。重塑因子的作用完成了染色质的修复。酵母染色质重塑复合物 INO80 在染色质结构中发挥着重要作用。我们利用诱导突变和实时 PCR 技术研究了 INO80 在染色质修复组装中的作用。在双突变体 ies5Δ hsm3Δ (hif1Δ)中,hsm3Δ和hif1Δ突变引起的核小体结构缺陷导致细胞对紫外线辐射过敏,hsm3和hif1特异性诱变消失。携带 nhp10Δ 突变体和 hsm3Δ 或 hif1Δ 突变体的双突变体在紫外线照射的致死效应方面与单突变体没有区别,但所有突变体所特有的紫外线诱导的高突变性消失了。因此,人们发现,控制 INO80 复合物亚基的基因突变与组蛋白伴侣基因突变之间会产生强烈的相互作用。Him1蛋白在染色质修复组装过程中发挥伴侣功能的假设得到了证实。
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引用次数: 0
Anthropology and Genetics of the Tolyonsky Burial Ground No. 93. Udmurtia, Polomskaya Archaeological Culture 托良斯基第 93 号墓地的人类学和遗传学。乌德穆尔西亚,波洛姆斯卡娅考古学文化
IF 0.6 4区 生物学 Q4 GENETICS & HEREDITY Pub Date : 2024-06-19 DOI: 10.1134/s1022795424700248
E. V. Veselovskaya, Yu. V. Rashkovskaya, A. S. Dyomin, Kh. Kh. Mustafin, I. E. Alborova

Abstract

The problems of the relationship between the cultures of the Volga-Kama region in general and the formation of the Udmurt ethnos involve scientists of various specializations. The main task of this work is to make a comprehensive description of the burial from the Tolyonsky burial ground located on the territory of the Debessky district of Udmurtia on the right bank of the Cheptsy River. Excavations were carried out by V.A. Semenov in the 1980s. Archaeological and anthropological material is stored in the Ivanova Historical and Cultural Museum-Reserve Idnakar of the Udmurt Republic. The absolute radiocarbon dating of the sample was obtained: 1440 ± 69 years. An anthropological study of the remains revealed a predominant body type as thoracic or pectorally muscular; the living body length was 166 cm. The studied individual was distinguished by brachycephaly, large latitudinal dimensions of the face, and a protruding nose shape. A scientific restoration of the appearance by the method of M.M. Gerasimov was carried out; contour and graphic portraits (full face and profile) were presented. Taking into account the results of genetic analysis, a watercolor artistic portrait was made. For the first time, comprehensive paleogenetic studies have been carried out on a representative of the Polomskaya archaeological culture. The Y-chromosomal haplogroup N1a1a1a2b (B181) and the mitochondrial haplogroup U4 have been established with high reliability. The identified haplogroups in individual no. 93 from the Tolyonsky burial ground along the male and female lines are geographically confined to the Central Volga-Ural region, which is consistent with the results of anthropological and archaeological research. With a probability of more than 97%, the color of the iris of the eyes is predicted to be blue in this individual.

摘要伏尔加-卡马地区文化与乌德穆尔特民族形成之间的关系问题涉及不同专业的科学家。这项工作的主要任务是全面描述位于切普西河右岸乌德穆尔特德别斯基地区境内的托良斯基墓地的墓葬。发掘工作由 V.A. 谢梅诺夫于 20 世纪 80 年代进行。考古和人类学资料保存在乌德穆尔特共和国伊万诺娃历史文化博物馆-伊德纳卡尔保护区。样本的绝对放射性碳年代测定结果为1440 ± 69 年。对遗骸的人类学研究表明,其主要体型为胸肌或胸肌型;活体长度为 166 厘米。研究对象的特征是颅骨畸形、面部纬度大、鼻形突出。根据 M.M. Gerasimov 的方法,对其外貌进行了科学修复;展示了轮廓和图形肖像(全脸和侧面)。考虑到基因分析的结果,还制作了水彩艺术肖像。首次对波洛姆斯卡亚考古学文化的代表人物进行了全面的古遗传学研究。Y 染色体单倍群 N1a1a1a2b(B181)和线粒体单倍群 U4 已被高度可靠地确定下来。在托廖翁斯基墓葬的 93 号个体中,已确定的单倍群为 N1a1a1a2b(B181)。在托廖翁斯基墓地发现的 93 号个体中,男性和女性的单倍群在地理上都局限于伏尔加-乌拉尔中部地区,这与人类学和考古学研究的结果是一致的。该个体眼睛虹膜的颜色被预测为蓝色的概率超过 97%。
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引用次数: 0
Bioinformatics Analysis of Non-Synonymous Single Nucleotide Polymorphisms in Human Adk Gene 人类 Adk 基因非同义单核苷酸多态性的生物信息学分析
IF 0.6 4区 生物学 Q4 GENETICS & HEREDITY Pub Date : 2024-06-19 DOI: 10.1134/s1022795424700273
P. Farrokh

Abstract

Adenosine kinase (ADK) controls adenosine levels. Abnormal concentration of adenosine lead to multiple disorders in humans. In this study, the effect of non-synonymous single nucleotide polymorphisms (nsSNPs) in human Adk was evaluated on the structure and function of long and short ADK isoforms (ADK-L and ADK-S) using computational tools. Of the 244 coding nsSNPs retrived in Adk, 66 amino acid changes were deleterious by at least five tools: SIFT, PhD-SNP, SNPs&GO, SuSPect, SNAP2, FATHMM, and PolyPhen-2. I-Mutant 2.0 and MUpro showed that among them, 26 substitutions had a strong destabilizing effect on both ADK isoforms. The conserved region and secondary structure of ADK isoforms were predicted by the ConSurf and NetSurfP-3.0 servers, respectively. The HOPE server displayed that 11 nsSNPs, due to the change in amino acid properties, had adverse effects on ADK isoforms. Docking analysis showed that L151 and F218 in ADK-L and their corresponding residues in ADK-S are located in the ligand-binding site and their mutations changed the cavity structure or ligand binding affinity. In conclusion, this study, by using computational methods, identified 11 harmful nsSNPs in human Adk. These predictive results facilitate the association of these nsSNPs with disease susceptibility in population studies.

摘要 腺苷激酶(ADK)控制着腺苷水平。腺苷浓度异常会导致人类多种疾病。本研究利用计算工具评估了人类腺苷酸激酶中的非同义单核苷酸多态性(nsSNPs)对长短腺苷酸激酶同工酶(ADK-L 和 ADK-S)的结构和功能的影响。在 Adk 中检索到的 244 个编码 nsSNPs 中,至少有五种工具发现 66 个氨基酸的变化是有害的:SIFT、PHD-SNP、SNPs&GO、SuSPect、SNAP2、FATHMM 和 PolyPhen-2。I-Mutant 2.0 和 MUpro 显示,其中 26 个取代对 ADK 两种异构体都有强烈的不稳定作用。ConSurf 和 NetSurfP-3.0 服务器分别预测了 ADK 异构体的保守区和二级结构。HOPE 服务器显示,有 11 个 nsSNPs 由于氨基酸性质的改变而对 ADK 同工酶产生了不利影响。对接分析表明,ADK-L 中的 L151 和 F218 以及 ADK-S 中的相应残基位于配体结合位点,它们的突变改变了空腔结构或配体结合亲和力。总之,本研究利用计算方法在人类 Adk 中发现了 11 个有害的 nsSNPs。这些预测结果有助于在人群研究中将这些 nsSNPs 与疾病易感性联系起来。
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引用次数: 0
DNA Methylation in Aortic Aneurysms of Different Localizations 不同部位主动脉瘤中的 DNA 甲基化
IF 0.6 4区 生物学 Q4 GENETICS & HEREDITY Pub Date : 2024-06-19 DOI: 10.1134/s1022795424700145
A. N. Kucher, S. A. Shipulina, I. A. Goncharova, M. S. Nazarenko

Abstract—

Aortic aneurysm (AA) is a life-threatening condition, and aortic rupture that is the complication of AA in the absence of emergency surgery leads to death. Genetic (more often in thoracic AA—TAA) and environmental factors (in TAA and abdominal AA—AAA) contribute to the development of AA. This review summarizes the data of scientific publications devoted to the study of DNA methylation under the influence of AA risk factors, as well as in the cells of different parts of the aorta (thoracic, abdominal) in normal and pathological conditions. Changes in DNA methylation are observed in aortic and/or blood cells in the presence of AA risk factors (arterial hypertension, smoking, age, and comorbidities). Studies of DNA methylation in TAA and AAA are few and have been conducted using different approaches to sample formation, cell sample selection, and experimental methods. However, they provide convincing evidence of the altered DNA methylation status of genes selected for study using a candidate approach (in the AAA study), as well as of different genomic regions in genome-wide DNA methylation analysis (mainly in TAA studies). Genes localized in differentially methylated regions are associated with the functioning of the cardiovascular system and are involved in cellular and metabolic processes pathogenetically significant for the development of AA. In a number of cases, the association of DNA methylation levels with clinical parameters in AA has been established. These results indicate the prospect of expanding the studies of DNA methylation in AA, including the identification of new pathogenetically significant links in AA development.

摘要-主动脉瘤(AA)是一种危及生命的疾病,主动脉破裂是AA的并发症,如果没有进行紧急手术,就会导致死亡。遗传因素(多见于胸部 AA-TAA)和环境因素(多见于 TAA 和腹部 AA-AAA)是 AA 的发病原因。本综述总结了专门研究 AA 风险因素影响下 DNA 甲基化以及正常和病理情况下主动脉(胸腔、腹腔)不同部位细胞中 DNA 甲基化的科学出版物数据。在存在 AA 风险因素(动脉高血压、吸烟、年龄和合并症)的情况下,主动脉和/或血液细胞中的 DNA 甲基化会发生变化。有关 TAA 和 AAA 中 DNA 甲基化的研究很少,而且采用的样本形成、细胞样本选择和实验方法也不尽相同。不过,这些研究提供了令人信服的证据,证明使用候选方法(在 AAA 研究中)选择研究的基因以及全基因组 DNA 甲基化分析(主要在 TAA 研究中)中不同基因组区域的 DNA 甲基化状态发生了改变。定位在不同甲基化区域的基因与心血管系统的功能有关,并参与细胞和代谢过程,对 AA 的发病具有重要的病理意义。在一些病例中,DNA 甲基化水平与 AA 的临床参数之间的关联已经得到证实。这些结果表明,有望扩大对 AA 中 DNA 甲基化的研究,包括确定 AA 发展过程中新的重要致病环节。
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引用次数: 0
L31 Transposons of Hexacorallia: Distribution, Diversity, and Evolution L31 六瓣伞属的转座子:分布、多样性和进化
IF 0.6 4区 生物学 Q4 GENETICS & HEREDITY Pub Date : 2024-06-19 DOI: 10.1134/s1022795424700157
L. V. Puzakova, M. V. Puzakov, P. M. Puzakova

Abstract

Transposable elements (TEs) of eukaryotes—retrotransposons and DNA transposons—are nucleotide sequences that can move from locus to locus of the genome, as well as between the genomes of different organisms. L31 DNA transposons are an ancient and diverse group belonging to the large IS630/Tc1/mariner group. L31 transposons are not widespread and are present in a limited number of taxa. In addition to the sequence encoding the DDE/D transposase, L31 transposons carry another ORF (ORF2). Detailed analysis of L31 elements in the genomes of six-rayed corals has provided detailed information on the distribution, diversity, and structure of the elements. Two large groups, L31-duo and L31-uno, were identified, differing in both catalytic domain pattern and structure. As a result of reconstruction of the evolution of L31 transposons, it was suggested that six-rayed corals received L31 transposons from bivalves. The split-off group L31-uno may have been obtained by mollusks as a result of horizontal transfer from corals. Studies of TE distribution and diversity in marine invertebrates will contribute to a better understanding of the evolutionary processes of TEs and their role in the evolutionary history of species.

摘要-真核生物的可转座元件(TE)--反转座子和DNA转座子--是一种核苷酸序列,可在基因组的不同位点之间以及不同生物的基因组之间移动。L31 DNA 转座子是一个古老而多样的群体,属于 IS630/Tc1/mariner 大群体。L31 转座子并不普遍,只存在于数量有限的类群中。除了编码 DDE/D 转座酶的序列外,L31 转座子还携带另一个 ORF(ORF2)。对六棱珊瑚基因组中 L31 元件的详细分析提供了有关这些元件的分布、多样性和结构的详细信息。结果发现,L31-duo 和 L31-uno 两大类在催化域模式和结构上都有所不同。通过重建 L31 转座子的进化过程,发现六带珊瑚从双壳类动物那里获得了 L31 转座子。L31-uno这一分离群体可能是软体动物从珊瑚中水平转移而来的。对海洋无脊椎动物中TE分布和多样性的研究将有助于更好地了解TE的进化过程及其在物种进化史中的作用。
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引用次数: 0
The Complete Mitochondrial Genome of the Mashen Pig (Sus scrofa) 马申猪(Sus scrofa)的完整线粒体基因组
IF 0.6 4区 生物学 Q4 GENETICS & HEREDITY Pub Date : 2024-06-19 DOI: 10.1134/s1022795424700212
H. Bai, L. Liu, H. Zhao, P. Li

Abstract

Mashen pig (Sus scrofa) is one of the famous local breeds in China. In this study, we sequenced and reported the complete mitochondrial genome of the Mashen pig. The complete mitogenome sequence is 16 649 bp in length, containing those typical complement of 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNAs, and a non-coding control region. Our new sequenced complete mitogenome of the Mashen pig will provide valuable information for the application to conservation genetics and evolutionary studies for Chinese local pig breeds.

摘要 马申猪(Sus scrofa)是中国著名的地方品种之一。本研究测序并报道了马申猪线粒体基因组全序列。完整的线粒体基因组序列全长16 649 bp,包含13个蛋白编码基因、2个核糖体RNA基因、22个转移RNA和一个非编码控制区。我们新测序的马申猪完整有丝分裂基因组将为中国地方猪种的保护遗传学应用和进化研究提供有价值的信息。
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引用次数: 0
Effects of Chronic Social Stress on the Expression of Neurotransmitter System–Associated Genes in the Hypothalamus of Male Mice 慢性社会压力对雄性小鼠下丘脑神经递质系统相关基因表达的影响
IF 0.6 4区 生物学 Q4 GENETICS & HEREDITY Pub Date : 2024-06-19 DOI: 10.1134/s1022795424700170
I. L. Kovalenko, A. G. Galyamina, D. A. Smagin, N. N. Kudryavtseva

Abstract

Chronic social stress caused by repeated negative experiences in agonistic interactions induces depressive-like behavior in male mice. The aim of this study was to investigate expression changes of genes encoding proteins involved in the metabolism, receptor sensing, and transport of catecholamines, opioids, glutamate, and GABA under the influence of chronic social stress. Hypothalamus samples were analyzed using high-throughput RNA sequencing. It was shown that in the depressed animals, the expression of catecholaminergic genes Adra1b, Adrbk1, Comtd1, Ppp1r1b, Sncb, Sncg, and Th is increased, while the expression of genes Maoa and Maob is reduced. The expression of opioidergic and cannabinoidergic genes Pdyn, Penk, Pomc, Pnoc, Ogfr, and Faah was found to be upregulated, while that of genes Oprk1, Opcml, Ogfrl1, and Cnr1 was downregulated. The expression of glutamatergic genes Grik3, Grik4, Grik5, Grin1, Grm2, and Grm4 was increased, while the expression of Gria3, Grik1, Grik2, Grin2a, Grin3a, Grm5, Grm8, and Gad2 was reduced. The expression of GABAergic genes Gabre, Gabbr2, and Slc6a11 was higher, while the expression of Gabra1, Gabra2, Gabra3, Gabrb2, Gabrb3, Gabrg1, Gabrg2, and Slc6a13 was lower in the depressed animals. The results suggest that the products of genes that interact with other neurotransmitter systems (Th, Gad2, Gabra1, Gabrg2, Grin1, and Pdyn) may be of interest as potential targets for the pharmacotherapy of consequences of chronic social stress.

摘要 在激动互动中反复出现的负面经历所导致的慢性社会应激会诱发雄性小鼠的抑郁样行为。本研究旨在探讨在慢性社会应激影响下,编码儿茶酚胺、阿片类、谷氨酸和 GABA 代谢、受体感应和转运相关蛋白的基因的表达变化。研究人员利用高通量 RNA 测序技术对下丘脑样本进行了分析。结果表明,在抑郁动物中,儿茶酚胺能基因Adra1b、Adrbk1、Comtd1、Ppp1r1b、Sncb、Sncg和Th的表达量增加,而基因Maoa和Maob的表达量减少。发现阿片能和大麻能基因 Pdyn、Penk、Pomc、Pnoc、Ogfr 和 Faah 的表达上调,而基因 Oprk1、Opcml、Ogfrl1 和 Cnr1 的表达下调。谷氨酸能基因 Grik3、Grik4、Grik5、Grin1、Grm2 和 Grm4 的表达增加,而 Gria3、Grik1、Grik2、Grin2a、Grin3a、Grm5、Grm8 和 Gad2 的表达减少。抑郁动物的 GABA 能基因 Gabre、Gabbr2 和 Slc6a11 的表达量较高,而 Gabra1、Gabra2、Gabra3、Gabrb2、Gabrb3、Gabrg1、Gabrg2 和 Slc6a13 的表达量较低。结果表明,与其他神经递质系统相互作用的基因(Th、Gad2、Gabra1、Gabrg2、Grin1和Pdyn)的产物可能是慢性社会应激后果药物治疗的潜在靶点。
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引用次数: 0
期刊
Russian Journal of Genetics
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