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Intra-specific variation in relative embryo length and germination of wild Daucus carota across climate gradients in North America and Europe 北美和欧洲不同气候梯度野生胡萝卜相对胚胎长度和发芽的种内变异
IF 2.1 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-12-19 DOI: 10.1017/s0960258524000230
Filip Vandelook, Ann Van de Vyver, Elias Soltani

Although seed trait variations and their relationship to the ecological niche have been studied extensively at the species level, they do not necessarily reflect variations at the population level. In this study, we explored the intra-specific variation in relative embryo length, seed mass and germination speed in 40 populations of Daucus carota distributed across Europe and North America. By including information on local climate conditions, we aimed to examine the impact of the geographical origin on various seed functional traits and to detect potential local adaptation. No significant difference was observed in final seed germination for European and North American seeds incubated at 20°C, nor in seed viability. In European populations, relative embryo length significantly increased with increasing seed mass, but no such relation was found in North American populations. Larger relative embryo length at dispersal resulted in increased germination speed in both European and North American populations. Populations in drier areas typically had seeds with larger relative embryo lengths. Precipitation-related climate variables showed a negative relationship with relative embryo length, indicating a reduction in relative embryo length with increased precipitation. No clear relationship between climate and seed mass was observed. We can conclude that seed functional traits of D. carota are adapted to local climate conditions, as a clear gradient was observed in the relative embryo length of D. carota, which was associated with germination speed and climate. This gradient was less pronounced in North America, which can be explained by its relatively recent introduction to the continent.

虽然在物种水平上对种子性状变异及其与生态位的关系进行了广泛的研究,但它们并不一定反映种群水平上的变异。本研究对分布在欧洲和北美的40个胡萝卜属居群的相对胚长、种子质量和发芽速度进行了种内变异研究。通过纳入当地气候条件的信息,我们旨在研究地理来源对各种种子功能性状的影响,并检测潜在的当地适应性。在20°C条件下,欧洲和北美种子的最终发芽率和种子活力没有显著差异。在欧洲种群中,相对胚胎长度随种子质量的增加而显著增加,而在北美种群中没有发现这种关系。在欧洲和北美种群中,分散时相对胚胎长度较大导致萌发速度加快。在干旱地区的种群通常具有较大的相对胚胎长度的种子。降水相关气候变量与相对胚胎长度呈负相关,表明相对胚胎长度随着降水的增加而减小。气候与种子质量之间没有明显的关系。油菜种子的相对胚长与萌发速度和气候有明显的梯度关系,表明油菜的种子功能性状对当地气候条件具有一定的适应性。这种梯度在北美不太明显,这可以解释为它相对较晚被引入大陆。
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引用次数: 0
Environmental drivers of seed persistence and seedling trait variation in two Neltuma species (Fabaceae) 两种 Neltuma 物种(豆科)种子持久性和幼苗性状变异的环境驱动因素
IF 2.1 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-12-18 DOI: 10.1017/s0960258524000205
Juan P. Renzi, Matías Quintana, Matías Bruna, Omar Reinoso
The endemic tree Neltuma caldenia Burk. and the shrub Neltuma flexuosa var depressa F.A. Roig (Fabaceae; subfam: Mimosoideae) are two promising species from the central region of Argentina, with high potential for use in the restoration of disturbed environments, for extensive livestock grazing and apiculture. Both species have seeds with physical dormancy. Ecological study of native species is important from the point of view of rehabilitation of degraded areas by natural regeneration or via seed-based programmes. The objective of this study was to evaluate soil seed bank persistence and seedling traits to understand variation among different populations of each of the study species growing along an ecological gradient and to identify potential components driving this variation. Home environments influenced seed bank persistence, which was higher in populations originating from more arid and unpredictable environments where it could act as a bet-hedging strategy between years and seasons. We also observed differences associated with seedling growth traits between the species and populations. Populations with higher seed persistence were associated with greater seedling growth in N. caldenia. The rapid elongation rate of N. caldenia seedlings growing in large populations and unstable environments could help their ability to escape drought by accessing deeper soil moisture and would confer a high relative competitive ability. In contrast, N. f. var depressa displayed higher seed persistence, which was associated with more arid and unstable conditions and correlated with lower seedling growth, possibly due to an inbreeding depression effect, resulting from the presence of mother plants in low-densities or being isolated from other individuals. There was no effect of population size on seed persistence. To better understand seed persistence and associated seedling trait variation, future studies need to consider the genotype, environment and landscape conditions.
特有树种 Neltuma caldenia Burk.和灌木 Neltuma flexuosa var depressa F.A.Roig(豆科;亚科:含羞草属)是阿根廷中部地区的两个有前途的物种,在恢复受干扰的环境、广泛放牧和养蜂方面具有很大的应用潜力。这两个物种的种子都有物理休眠。从通过自然再生或种子计划恢复退化地区的角度来看,对本地物种进行生态学研究非常重要。本研究的目的是评估土壤种子库的持久性和幼苗性状,以了解沿生态梯度生长的每个研究物种的不同种群之间的差异,并确定导致这种差异的潜在因素。原生地环境会影响种子库的持久性,原生地环境较为干旱且不可预测的种群的种子库持久性较高,在这种环境中,种子库可以作为不同年份和季节之间的对冲策略。我们还观察到不同物种和种群之间与幼苗生长特征相关的差异。种子存活率较高的种群,其幼苗生长速度较快。在大种群和不稳定环境中生长的矢车菊幼苗伸长速度快,这有助于它们通过获取更深层的土壤水分来躲避干旱,并赋予其较高的相对竞争能力。与此相反,N. f. var depressa 的种子存活率较高,这与更干旱和不稳定的环境有关,并与较低的幼苗生长率相关,这可能是由于母株存在低密度或与其他个体隔离而产生的近亲繁殖抑制效应。种群数量对种子的持久性没有影响。为了更好地了解种子的持久性和相关的幼苗性状变异,未来的研究需要考虑基因型、环境和景观条件。
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引用次数: 0
Radicle emergence could overestimate the prediction of seed longevity in wild plants 在野生植物中,胚根的出现可能高估了对种子寿命的预测
IF 2.1 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-12-18 DOI: 10.1017/s0960258524000175
Malaka M. Wijayasinghe, Fiona R. Hay, Maria Tudela Isanta, Alma Balestrazzi, Louise Colville, Hugh W. Pritchard, Andrea Mondoni
Seed longevity influences the success of ex situ storage and preservation of plant genetic diversity and is thus a critical factor in conservation efforts. Rapid seed ageing experiments at high temperature and high humidity have been widely used to classify seed longevity for hundreds of plant species, with potential implications for longevity in ex situ conservation. In this approach, radicle emergence (R) is normally used as a measure of the viability of the seeds. However, R could overestimate the level of normal seedling development and, consequently, the perceived longevity of seeds. Here, seed lifespan for 33 alpine species was compared to assess whether germination criteria could affect seed longevity parameters. Seeds were exposed to controlled ageing [45°C, 60% relative humidity (RH)] and regularly sampled for germination assessment as both radicle emergence (R) and radicle plus cotyledon emergence (R + C). The time taken in storage for viability to fall to 50% (p50) was determined using probit analysis, including either R or R + C data. A coefficient of overestimation of seed longevity (OESL, %) was determined. The results highlight significant differences in seed longevity estimates both across species and the germination criteria. For 17 species, seed longevity estimated by R was significantly higher than that estimated using R + C, resulting in large variation in OESL (0.54–9.01 d). The introduction of OESL facilitates effective screening for seed longevity and recovery, enhancing the overall efficiency of conservation strategies for diverse species.
种子寿命影响着异地贮藏和植物遗传多样性保护的成败,因此是保护工作中的一个关键因素。高温高湿条件下的种子快速老化试验已被广泛用于对数百种植物种子的寿命进行分类,对异地保护中的寿命具有潜在影响。在这种方法中,通常使用胚根萌发率(R)来衡量种子的存活率。然而,胚根萌发率可能会高估正常幼苗的发育水平,从而高估种子的寿命。在此,我们对 33 种高山植物的种子寿命进行了比较,以评估萌发标准是否会影响种子寿命参数。对种子进行受控老化(45°C、60% 相对湿度),并定期取样进行发芽评估,包括胚根萌发(R)和胚根加子叶萌发(R + C)。使用 probit 分析法(包括 R 或 R + C 数据)确定存活率下降到 50%(p50)所需的储存时间。确定了种子寿命高估系数(OESL,%)。结果表明,不同物种和不同萌发标准的种子寿命估计值存在显著差异。在 17 个物种中,用 R 估算的种子寿命明显高于用 R + C 估算的种子寿命,导致 OESL 的巨大差异(0.54-9.01 d)。引入 OESL 有助于对种子寿命和恢复能力进行有效筛选,从而提高不同物种保护战略的整体效率。
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引用次数: 0
Fruiting traits and seedling regeneration of the relict mangrove plant Nypa fruticans Wurmb in China 中国孑遗红树植物 Nypa fruticans Wurmb 的果实性状和幼苗再生
IF 2.1 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-12-18 DOI: 10.1017/s0960258524000229
Mengwen Zhang, Cairong Zhong, Erhui Feng, Xiaobo Lv, Zanshan Fang, Cheng Cheng

Nypa fruticans Wurmb is both a relic plant and a true mangrove. In China, wild populations are distributed only on Hainan Island and face significant challenges in regeneration from seedlings. This study explored the underlying causes of recruitment limitation by examining seed morphological traits from three distinct populations (Haikou, Wenchang and Wanning) and analysing seed germination and seedling growth characteristics under varying conditions. The key findings are as follows: fruiting and seed-setting rates for N. fruticans were notably low, standing at only 21 and 40%, respectively. The Wanning population exhibited significantly higher rates compared to the other two populations. Under natural conditions, the germination and seedling emergence rates were also modest, at 36.58 and 22.99%, respectively. The germination and emergence rates of the Wanning population were significantly greater than those of the Haikou and Wenchang populations. Meanwhile, seeds from a single population did not differ in germination rates among three in situ N. fruticans habitats, but seedling emergence rates differed significantly. Optimal conditions for seed germination involved a light intensity of 60%, a salinity of 5‰ and a flooding time of 8 h/day. In natural settings, these three environmental factors fall short of the ideal conditions. The study underscores that light, salinity and flooding are primary factors contributing to the limitations in N. fruticans seedling recruitment. In addition to advocating increased investment in scientific research and technology to address seed source issues, we recommend heightened efforts in habitat restoration, in situ conservation and the optimization of relocation and field return strategies to bolster N. fruticans populations.

水果树乌姆既是一种遗迹植物,也是一种真正的红树林。在中国,野生种群仅分布在海南岛,在幼苗再生方面面临着重大挑战。本研究通过对海口、文昌和万宁三个不同居群种子形态特征的分析,以及不同条件下种子萌发和幼苗生长特征的分析,探讨了补种限制的潜在原因。主要发现如下:果螨的结果率和结实率都很低,分别只有21%和40%。万宁种群的发病率明显高于其他两个种群。自然条件下的发芽率和出苗率也不高,分别为36.58%和22.99%。万宁种群的萌发率和出苗率显著高于海口和文昌种群。同一种群种子发芽率在不同生境间无显著差异,但出苗率差异显著。种子萌发的最佳条件为光照强度为60%,盐度为5‰,淹水时间为8 h/d。在自然环境中,这三个环境因素都达不到理想的条件。该研究强调,光照、盐度和淹水是制约果蔓幼苗招募的主要因素。除了提倡增加科学研究和技术投资以解决种子来源问题外,我们还建议加强栖息地恢复,原地保护和优化搬迁和田间返回策略,以增加果蝠种群。
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引用次数: 0
Insects and mycorrhizal fungi influence maternal seed provisioning in Senecio vulgaris 昆虫和菌根真菌对庸俗蕨类植物母本种子供应的影响
IF 2.1 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-12-16 DOI: 10.1017/s0960258524000266
Ruth P. Chitty, Alan C. Gange

The performance of plants in any one generation can be influenced not just by the prevailing biotic and abiotic factors, but also by those factors experienced by the parental generation. These maternal effects have been recorded in an array of plant species, but most studies tend to focus on abiotic factors over two generations. Here we show that maternal effects in the annual forb Senecio vulgaris may be influenced by beneficial arbuscular mycorrhizal fungi and insect herbivory over four successive generations. These effects were very much determined by seed provisioning, wherein C:N:P ratios were altered by both fungi and aphids. There was little evidence of epigenetic changes induced by the fungi or insects, instead the driving forces seemed to be allocation of N and P to the seeds. However, changes in seed chemistry were not cumulative over generations, often decreases in seed nutrient content were followed by recovery in subsequent generations. The changes in seed stoichiometry can have important consequences for viability, germination and subsequent seedling growth rates. We conclude that studies of maternal effects need to be conducted over multiple generations, and also need to be multifactorial, involving variation in abiotic factors such as water and nutrients, combined with biotic factors.

植物在任何一代中的表现不仅受到主要的生物和非生物因素的影响,而且还受到亲代所经历的那些因素的影响。这些母性影响已经在一系列植物物种中被记录下来,但大多数研究倾向于关注两代以上的非生物因素。本研究表明,在连续4代的时间里,有益的丛枝菌根真菌和昆虫食草性可能会影响到一年生草本植物的母性效应。这些影响在很大程度上取决于种子供应,其中C:N:P比率被真菌和蚜虫改变。几乎没有证据表明真菌或昆虫引起了表观遗传变化,相反,驱动力似乎是氮和磷分配给种子。然而,种子化学成分的变化不是世代累积的,种子养分含量往往在后代中下降,然后恢复。种子化学计量学的变化对种子的生存力、发芽和随后的幼苗生长速率有重要的影响。我们的结论是,对母亲影响的研究需要在多代人的时间内进行,也需要是多因素的,包括水和营养等非生物因素的变化,以及生物因素的结合。
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引用次数: 0
Evaluating seed longevity: use of RNA integrity to characterize variation within species of legume grains 评估种子寿命:利用RNA完整性来表征豆科籽粒物种内的变异
IF 2.1 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-12-12 DOI: 10.1017/s0960258524000072
Hannah M. Tetreault, Robert J. Redden, Margaret B. Fleming, Lisa Hill, Zoe Zingerman, Katherine Whitehouse, Sally Norton, Christina Walters

Seed genebanks must maintain collections of healthy seeds and regenerate accessions before seed viability declines. Seed shelf life is often characterized at the species level; however, large, unexplained variation among genetic lines within a species can and does occur. This variation contributes to unreliable predictions of seed quality decline with storage time. To assess variation of seed longevity and aid in timing regeneration, ten varieties of pea (Pisum sativum L.), chickpea (Cicer arietinum L.) and lentil (Lens culinaris Medikus subsp. culinaris) from the Australian Grains Genebank were stored at moderate temperature (20°C) and moisture (7–11% water, relative humidity [RH] ~30%) and deterioration was assessed by yearly germination tests for 20 years. Decline in germination was fit to a sigmoidal model and the time corresponding to 50% germination (P50) was used to express seed longevity for each genetic line. The feasibility of using RNA fragmentation to assess changed seed health was measured using RNA integrity number (RIN) from RNA extracted from seeds that were stored for 13 and 20 years. Seed lots of legume grains that maintained high survival throughout the 20 years (i.e. they aged slower than other lines) had higher RIN than samples that degraded faster. RIN was lower in embryonic axes compared with cotyledons in the more deteriorated samples, perhaps indicating that axes exhibit symptoms of ageing sooner than cotyledons. Overall, RIN appears to be associated with longevity indicators of germination for these legumes and indicating that RIN decline can be used to assess ageing rate, which is needed to optimize viability monitoring.

种子基因库必须保持健康种子的收藏,并在种子活力下降之前再生。种子的货架期通常在物种水平上表征;然而,一个物种内的遗传系之间可能而且确实发生了巨大的、无法解释的变异。这种变异导致种子质量随储存时间下降的预测不可靠。以豌豆(Pisum sativum L.)、鹰嘴豆(Cicer arietinum L.)和小扁豆(Lens culinaris Medikus subsp.)为研究对象,研究了种子寿命的变化及其对定时再生的帮助。将澳大利亚谷物基因库中的culinaris (culinaris)种子置于中温(20°C)和中湿(7-11%水分,相对湿度[RH] ~30%)条件下贮存20年,通过每年发芽试验评估其变质情况。发芽率下降符合s型模型,并以50%发芽率对应的时间(P50)表示各遗传系的种子寿命。采用RNA完整性数(RIN)对储存13年和20年的种子中提取的RNA进行测量,以评估RNA片段化评估种子健康变化的可行性。在20年间保持高成活率(即老化速度比其他品系慢)的豆科种子,其籽粒RIN高于退化速度更快的样品。在更坏的样品中,与子叶相比,胚胎轴中的RIN较低,这可能表明轴比子叶更早表现出衰老的症状。总的来说,RIN似乎与这些豆科植物发芽的寿命指标有关,表明RIN下降可以用来评估老化速度,这是优化活力监测所需要的。
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引用次数: 0
Prolonged seed submersion influences germination and early seedling growth of Amazonian floodplain trees 种子长时间浸没影响亚马逊河漫滩树木的发芽和幼苗早期生长
IF 2.1 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-12-10 DOI: 10.1017/s0960258524000138
Josephina B. Veiga, Maria T. F. Piedade, Augusto C. Franco, Gilvan S. Costa, Cristiane S. Ferreira

Seeds of many Amazonian floodplain forest trees are dispersed during high-water periods and spend weeks or months underwater until the flooding retreats. To assess whether prolonged seed submersion affects germination and early seedling development, an experiment was carried out in a greenhouse with seeds of Campsiandra laurifolia, Cassia leiandra, Crataeva tapia, Ilex inundata, Macrolobium acaciifolium, Nectandra amazonum, Pouteria glomerata, Psidium acutangulum, Sorocea duckei, and Vitex cymosa. They are common in this type of forest, differ in fruit type, number of seeds per fruit, fruit dimensions, and fresh mass and have fruits or seeds that can float. Seeds were collected in a Central Amazonian floodplain forest (flooded approximately 6 months year−1; water column of 5 m) and germinated in (1) irrigated soil or (2) underwater (water column of 5–7 cm) for 6 months. Seeds that germinated underwater were transferred to drained soil. Seeds of all species germinated underwater and developed seedlings when transferred to soil. However, submersion reduced the germination percentage of Psidium acutangulum, N. amazonum, P. glomerata and V. cymosa. Six species delayed germination in water. Ca. leiandra, I. inundata and P. glomerata did not differ in mean germination time in drained soil and underwater, whereas S. duckei seeds germinated faster underwater. Seed submersion negatively affected seedling growth (shoot length) of three species but did not affect seedling biomass. Timing of fruit dispersal, fruit buoyancy and high number of seeds per fruit can be critical for species with seeds that are not as able to cope with long-term submersion.

许多亚马逊洪泛区森林树木的种子在水位高的时候分散开来,在水下待上几周或几个月,直到洪水退去。为了研究种子长时间浸没是否会影响种子萌发和幼苗早期发育,在温室中对月桂山Campsiandra leiandra,山楂,山楂,绿冬青,大青藤,猕猴桃,鸭绿豆,木犀草,针叶木犀草,鸭绿豆,牡荆花等植物种子进行了试验。它们在这种类型的森林中很常见,在果实类型、每个果实的种子数量、果实尺寸和新鲜质量上有所不同,并且果实或种子可以漂浮。种子采集于亚马逊中部漫滩森林(每年约有6个月被洪水淹没);水柱5米),在(1)灌溉土壤或(2)水下(水柱5 - 7厘米)发芽6个月。在水下发芽的种子被转移到排水的土壤中。所有物种的种子在水下发芽,转移到土壤中长成幼苗。浸水处理降低了针叶草、亚马孙木、glomerata和cymosa的发芽率。6种在水中延迟发芽。水草、黄花和黄花种子在排水土壤和水下的平均发芽时间没有差异,而鸭苔种子在水下的发芽速度更快。浸种对三种植物的幼苗生长(梢长)有负向影响,但对幼苗生物量无显著影响。果实扩散的时间、果实的浮力和每个果实的高种子数量对于种子不能长期淹没的物种来说是至关重要的。
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引用次数: 0
Maternal environmental control of progeny seed physiology: a review of concepts, evidence and mechanism 母体环境对后代种子生理的控制:概念、证据和机制综述
IF 2.1 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-11-20 DOI: 10.1017/s0960258524000151
William Bezodis, Steven Penfield

The environment experienced by a plant before and after reproduction can have a profound effect on the behaviour of the progeny after shedding. Maternal environmental effects on seeds are important for phenology and fitness in plants, especially for bet-hedging reproductive strategies. Maternal tissues that disperse with seeds are important for dormancy in many species, particularly those with coat-imposed dormancy and those that disperse in indehiscent fruits. Maternal nitrogen status, temperature and photoperiod modify maternal tissues and also influence the developing zygote. During seed development on the mother, the progeny may acquire environmental information directly, but there is also evidence for maternal–filial signalling and the epigenetic inheritance of environmental information through the germline.

植物在繁殖前后所经历的环境会对后代脱落后的行为产生深远影响。母体环境对种子的影响对植物的物候学和适应性非常重要,尤其是对对冲繁殖策略而言。与种子一起散播的母体组织对许多物种的休眠都很重要,特别是那些具有外皮休眠和以不裂果形式散播的物种。母体的氮状态、温度和光周期会改变母体组织,也会影响发育中的子代。在母体上的种子发育过程中,后代可能会直接获得环境信息,但也有证据表明母体-子代信号以及环境信息通过种系的表观遗传。
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引用次数: 0
Dry and warm: a modified open-top chamber for seed ecology research 干燥而温暖:用于种子生态学研究的改良型敞篷室
IF 2.1 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-10-04 DOI: 10.1017/s096025852400014x
Jerónimo Vázquez-Ramírez, Susanna E. Venn

Several experimental tools allow researchers to manipulate environmental variables to simulate future climate change scenarios during in situ seed ecology studies. The most common ones are designed to modify a single environmental variable. For example, open-top chambers (OTCs) increase temperature or rain-out shelters decrease precipitation. However, changes in environmental variables in the future are expected to happen simultaneously, and at present, an understanding of their combined effects in natural environments is limited. Here, we present a passive novel OTC design that simultaneously increases the soil temperature and decreases soil moisture. We assessed the performance of the design during 1 year in a high-mountain environment and reported its effects on the organic and topsoil layers. The modified OTC reduced the soil volumetric water content throughout the study period. Overall, chambers increased the mean day air temperature by 3.3 °C (at 10 cm above the soil surface), the mean day soil surface temperature by 1.35 °C and the mean day below the soil surface temperature by 1.30 °C (at −5 cm) and 1.25 °C (at −10 cm). Remarkably, surface and soil temperatures remained warmer at night (+0.65 at soil surface, +0.41 at −5 cm and +0.24 at −10 cm). We detail the design plans, tools and materials needed for its construction. Furthermore, we recommend on how to use it during seed ecology studies. This tool can help increase our understanding of the potential responses of seeds and seedlings to the combined effects of warming temperatures and a decrease in precipitation.

在原位种子生态学研究中,研究人员可以利用几种实验工具来操纵环境变量,模拟未来的气候变化情景。最常见的实验工具旨在改变单一的环境变量。例如,开顶室(OTC)可以提高温度,避雨棚可以降低降水量。然而,未来环境变量的变化预计会同时发生,而目前对自然环境中环境变量综合效应的了解还很有限。在这里,我们介绍了一种新型被动式 OTC 设计,它能同时提高土壤温度和降低土壤湿度。我们评估了该设计在高山环境中一年的表现,并报告了它对有机土层和表土层的影响。在整个研究期间,改良的 OTC 降低了土壤容积含水量。总体而言,气室使日平均气温提高了 3.3 °C(土壤表面以上 10 厘米处),日平均土壤表面温度提高了 1.35 °C,日平均土壤表面以下温度提高了 1.30 °C(-5 厘米处)和 1.25 °C(-10 厘米处)。值得注意的是,地表和土壤温度在夜间仍然较高(土壤表层+0.65,-5 厘米处+0.41,-10 厘米处+0.24)。我们详细介绍了设计方案、工具和建造所需的材料。此外,我们还建议在种子生态学研究中如何使用它。该工具可帮助我们进一步了解种子和幼苗对气温升高和降水减少的综合影响的潜在反应。
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引用次数: 0
Full-length transcriptome and co-expression network analysis reveal molecular mechanisms of seed development in Elymus sibiricus 全长转录组和共表达网络分析揭示了西双版纳杓兰种子发育的分子机制
IF 2.1 3区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-05-16 DOI: 10.1017/s0960258524000084
Yuying Zheng, Xiaoshan Lin, Wengang Xie, Wenxian Liu

Grass seeds play a critical and fundamental role in grass breeding and production. Elymus sibiricus L. is a widespread Poaceae forage grass in northern Eurasia which is used for ecological restoration and forage production. Sucrose is the main source of substrate and energy required for starch synthesis in the seeds, so the hydrolysis of sucrose determines and influences starch synthesis and filling in the seeds, especially Poaceae. However, the process behind carbohydrate metabolism during E. sibiricus seed development remains unclear. This study addresses a significant gap in our understanding of the carbohydrate metabolism during seed development in E. sibiricus by employing full-length transcriptome sequencing across five developmental stages for the first time. Full-length transcriptome sequencing was performed on E. sibiricus seeds at five developmental stages (S5, S9, S15, S20, S25) to get better molecular insights. We identified 13,205 differentially expressed genes, with 7,471 up-regulated and 5,734 down-regulated. Through KEGG enrichment analysis, genes were enriched in ‘starch and sucrose metabolism’, ‘photosynthetic-related’ and ‘hormone signal transduction’ pathways. Gene ontology enrichment analysis showed that genes were enriched in the ‘beta-amylase activity’ term of molecular functions. In addition, top 21 transcription factor families were identified as involved in seed development. The homologous genes of ABSCISIC ACID-INSENSITIVE 3 (ABI3), NUCLEAR FACTOR-YB1 (NF-YB1), STARCH SYNTHASE I (SSI) were identified as candidate genes of seed development in E. sibiricus. Combined with physiological index, transcriptome analyses, weighted gene co-expression network analysis and real-time quantitative PCR, the mechanism of starch and sucrose content of seed development was revealed and ten hub genes were identified. Overall, this study provides the molecular bases to understand seed development and starch and sucrose metabolism at the different seed developmental stages in E. sibiricus.

草籽在牧草育种和生产中起着至关重要的基础作用。Elymus sibiricus L. 是一种广泛分布于欧亚大陆北部的禾本科牧草,可用于生态恢复和饲料生产。蔗糖是种子中淀粉合成所需的主要底物和能量来源,因此蔗糖的水解决定并影响着种子中淀粉的合成和填充,尤其是禾本科植物。然而,西伯利亚苣苔种子发育过程中的碳水化合物代谢过程仍不清楚。本研究首次采用全长转录组测序技术对西伯利亚大戟种子五个发育阶段的碳水化合物代谢过程进行了研究,填补了我们对西伯利亚大戟种子发育过程中碳水化合物代谢过程的认识空白。为了获得更好的分子认识,我们对西伯利亚红豆杉种子的五个发育阶段(S5、S9、S15、S20、S25)进行了全长转录组测序。我们发现了 13,205 个差异表达基因,其中 7,471 个上调,5,734 个下调。通过 KEGG 富集分析,基因富集在 "淀粉和蔗糖代谢"、"光合相关 "和 "激素信号转导 "通路中。基因本体富集分析表明,基因富集于分子功能的 "β-淀粉酶活性 "项。此外,还确定了参与种子发育的前 21 个转录因子家族。其中,ABSCISIC ACID-INSENSITIVE 3 (ABI3)、NUCLEAR FACTOR-YB1 (NF-YB1)、STARCH SYNTHASE I (SSI) 的同源基因被确定为西比瑞草种子发育的候选基因。结合生理指标、转录组分析、加权基因共表达网络分析和实时定量 PCR 等方法,揭示了种子发育过程中淀粉和蔗糖含量的变化机制,并确定了 10 个中枢基因。总之,本研究为了解西伯利亚大豆种子不同发育阶段的种子发育及淀粉和蔗糖代谢提供了分子基础。
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Seed Science Research
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