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Generation of an ITPR1+/− and isogenic control induced pluripotent stem cell line for SCA15/16 model development 用于SCA15/16模型发育的ITPR1+/-和等基因控制诱导多能干细胞系的生成
IF 0.7 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-22 DOI: 10.1016/j.scr.2025.103858
Bailey E. Masser-Mitchell , Hayley S. McLoughlin
Spinocerebellar ataxia type 15/16 (SCA15/16) is a rare neurodegenerative disorder caused by heterozygous deletions of ITPR1, leading to haploinsufficiency of the encoded endoplasmic reticulum membrane calcium channel. Patients present with progressive gait disturbances, abnormal eye movements, difficulties with speech and swallowing, and tremors associated with atrophy of the cerebellum. Using CRISPR/Cas9 technology, we generated ITPR1+/− and isogenic control induced pluripotent stem cell (iPSC) lines from PGP1 iPSCs for SCA15/16 model development. The clones were genotyped, karyotyped, and assessed for pluripotency and differentiation potential.
脊髓小脑性共济失调15/16型(SCA15/16)是一种罕见的神经退行性疾病,由ITPR1杂合缺失引起编码内质网膜钙通道单倍性不足。患者表现为进行性步态障碍、眼球运动异常、言语和吞咽困难以及伴有小脑萎缩的震颤。利用CRISPR/Cas9技术,我们从ppg1诱导多能干细胞中获得ITPR1+/-和等基因控制诱导多能干细胞(iPSC)系,用于SCA15/16模型的开发。对克隆进行基因分型、核型、多能性和分化潜力评估。
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引用次数: 0
Derivation of pluripotent stem cell lines (RFSCi005-A, RFSCi006-A) from siblings harboring identical high-risk complement variants with discordant age-related macular degeneration 多能干细胞系(RFSCi005-A, RFSCi006-A)的衍生来自具有相同高风险补体变异的兄弟姐妹,这些变体具有不一致的年龄相关性黄斑变性。
IF 0.7 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-21 DOI: 10.1016/j.scr.2025.103852
Naresh Rajendran , Ajeet Singh , Wendy Runyon , Sam Hu , Ritu Kumar , Rinki Ratnapriya , Karl Csaky , Srinivasa R. Sripathi
Age-related macular degeneration (AMD) is a complex disease influenced by genetic and environmental factors. Variants in the complement pathway, especially in the CFH gene, increase AMD risk, yet disease severity can differ among individuals with identical high-risk genotypes. We generated induced pluripotent stem cell (iPSC) lines from siblings carrying identical high-risk complement variants but displaying discordant AMD phenotypes. These lines provide a unique platform to study epigenetic, transcriptomic, and environmental factors driving AMD heterogeneity. By comparing differentiated retinal cells, we aim to reveal mechanisms behind variable disease susceptibility and inform personalized therapies for AMD.
老年性黄斑变性(AMD)是一种受遗传和环境因素影响的复杂疾病。补体通路的变异,尤其是CFH基因的变异,会增加AMD的风险,但具有相同高危基因型的个体的疾病严重程度可能不同。我们从携带相同高风险补体变异但显示不一致AMD表型的兄弟姐妹中产生了诱导多能干细胞(iPSC)系。这些细胞系为研究表观遗传、转录组学和驱动AMD异质性的环境因素提供了一个独特的平台。通过比较分化的视网膜细胞,我们旨在揭示不同疾病易感性背后的机制,并为AMD的个性化治疗提供信息。
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引用次数: 0
Targeted large-fragment genomic deletion in human pluripotent stem cells (hPSCs) via CRISPR/Cas9 基于CRISPR/Cas9的人多能干细胞靶向大片段基因组缺失
IF 0.7 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-21 DOI: 10.1016/j.scr.2025.103859
Sai Wei , Ruiting Ma , Ting Zhang , Luan Wen
Large genomic deletions are increasingly recognized as contributors to human disease. Here, we describe a CRISPR/Cas9-based protocol to induce targeted large-fragment deletions in human pluripotent stem cells (hPSCs). Two sgRNAs flanking the target region were designed, synthesized, and co-delivered with Cas9 protein into single-cell hPSCs via electroporation. Deletions were identified using junction PCR. Successfully edited cell pools were expanded as single-cell colonies and assessed for genomic deletion, stem cell identity, karyotype integrity, and tri-lineage differentiation capacity. This approach provides a robust method for modeling genomic deletions in hPSCs for disease research and functional genomics.
越来越多的人认识到大的基因组缺失是导致人类疾病的因素。在这里,我们描述了一种基于CRISPR/ cas9的方案,在人多能干细胞(hPSCs)中诱导靶向大片段缺失。设计、合成了两个位于靶区的sgrna,并通过电穿孔将其与Cas9蛋白共递送到单细胞hPSCs中。使用结PCR鉴定缺失。成功编辑的细胞池扩展为单细胞集落,并评估基因组缺失、干细胞身份、核型完整性和三谱系分化能力。这种方法为疾病研究和功能基因组学提供了一种强大的方法来模拟人造血干细胞中的基因组缺失。
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引用次数: 0
Generation of two induced pluripotent stem cell lines (FDCHi011-A and FDCHi016-A) from different patients with NBIA5 syndrome carrying WDR45 m.700C > T and m.888G > A mutation 来自不同NBIA5综合征患者的两种诱导多能干细胞系(FDCHi011-A和FDCHi016-A)携带WDR45 m.700C > T和m.888G > A突变
IF 0.7 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-21 DOI: 10.1016/j.scr.2025.103860
Tingting Yin , Ping Dong , XiaoJuan Shi , Zhelan Huang , Xiaohong Guo , Wenhao Zhou , Huijun Wang
Neurodegeneration with brain iron accumulation-5 (NBIA5) is caused by de novo heterozygous or hemizygous mutation in the WDR45 gene on chromosome Xp11. Peripheral mononuclear blood cells from these patients carrying WDR45 variants (c.888G > A and c.700C > T) were obtained to generate two human induced pluripotent stem cell (iPSC) lines. The two iPSC lines presented typical pluripotent cell morphology and displayed normal karyotypes, were characterized for markers for the identification of undifferentiated hPSCs, and differentiated into three germ layers.
神经退行性脑铁积累-5 (NBIA5)是由Xp11染色体上WDR45基因的杂合或半合子突变引起的。从这些携带WDR45变异体(c.888G >; A和c.700C >; T)的患者身上获得外周单核血细胞,生成两种人类诱导多能干细胞(iPSC)系。两株iPSC细胞系具有典型的多能细胞形态和正常的核型,具有未分化的hPSCs鉴定标记,分化为3种胚层。
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引用次数: 0
Generation of a human iPSC line with EGFP knock-in at the ATRX locus for visualization of chromatin remodeler dynamics and nuclear condensate formation 在ATRX位点上敲入EGFP的人类iPSC系的生成,用于染色质重塑动力学和核凝析物形成的可视化。
IF 0.7 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-17 DOI: 10.1016/j.scr.2025.103856
Ryo Tomooka , Hideyuki Okano , Jun Kohyama
ATRX is a chromatin-remodelling protein associated with neurodevelopmental disorders and gliomas, forming distinct nuclear foci associated with chromatin organization and phase-separated nuclear compartments. To visualize ATRX dynamics in live cells, we generated a human iPS cell (hiPSC) line with EGFP knocked in at the ATRX N-terminus using CRISPR/Cas12a-mediated genome editing. The modified hiPSCs retained pluripotency, normal karyotype, and trilineage differentiation potential. EGFP-ATRX localized to discrete nuclear foci, consistent with the phase-separated condensates described for ATRX, enabling real-time visualization of its chromatin association. This reporter line offers a valuable tool for studying ATRX function during differentiation and chromatin architecture development.
ATRX是一种染色质重塑蛋白,与神经发育障碍和胶质瘤相关,形成与染色质组织和相分离核室相关的独特核灶。为了可视化ATRX在活细胞中的动态,我们使用CRISPR/ cas12a介导的基因组编辑技术,在ATRX n端敲入EGFP,生成了人类iPS细胞(hiPSC)系。修饰后的hiPSCs保留了多能性、正常核型和三龄分化潜能。EGFP-ATRX定位于离散的核焦点,与ATRX描述的相分离凝聚相一致,能够实时可视化其染色质关联。这条报告线为研究ATRX在分化和染色质结构发育过程中的功能提供了有价值的工具。
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引用次数: 0
Generation of a FAM189A2/ENTREP1 knockout human induced pluripotent stem cell line using CRISPR/Cas9 technology 利用CRISPR/Cas9技术产生FAM189A2/ENTREP1基因敲除的人诱导多能干细胞系
IF 0.7 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-17 DOI: 10.1016/j.scr.2025.103857
Sibylle Marteau , Laetitia Duboscq-Bidot , Takanori Aizawa , Matthieu Hamlin , Eric Villard , Pascale Guicheney , Vincent Fontaine
FAM189A2/ENTREP1 encodes a transmembrane protein, EREP1, ubiquitously expressed, with higher levels in thyroid gland, skeletal muscle, heart and glial cells, suggesting tissue-specific roles. It is regulated in various cancers and genetic studies suggested that it could be associated with cardiac and cardiometabolic diseases. EREP1 was reported to activate ITCH, an E3 ubiquitin ligase, involved in endosomal dynamics and protein trafficking. We generated by CRISPR/Cas9 technology a human induced pluripotent stem cells (hiPSCs) line carrying two compound heterozygous deletions leading to gene invalidation, with the aim of further exploring the poorly understood function of this protein.
FAM189A2/ENTREP1编码一种跨膜蛋白EREP1,该蛋白普遍表达,在甲状腺、骨骼肌、心脏和神经胶质细胞中表达水平较高,提示其具有组织特异性作用。它在各种癌症中受到调节,遗传学研究表明它可能与心脏和心脏代谢疾病有关。据报道,EREP1激活ITCH,一种E3泛素连接酶,参与内体动力学和蛋白质运输。我们通过CRISPR/Cas9技术生成了一种人类诱导多能干细胞(hiPSCs)系,该系携带两种导致基因失效的复合杂合缺失,目的是进一步探索该蛋白的未知功能。
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引用次数: 0
Establishment of human induced pluripotent stem cell line, NIMHi020-A from fibroblasts of a patient with IBA57 variant (p.Tyr113Cys) 从IBA57变体(p.t ry113cys)患者的成纤维细胞中建立人诱导多能干细胞系NIMHi020-A。
IF 0.7 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-14 DOI: 10.1016/j.scr.2025.103853
Maheshwari Baduvandra Chettiyappa , Bevinahalli Nanjegowda Nandeesh , Madhura Milind Nimonkar , Sekar Deepha , Siddharth Kapahtia , Meenakshi Sharma , Periyasamy Govindaraj , Bhupesh Mehta , Yogananda S. Markandeya
IBA57 (Iron-Sulphur Cluster Assembly Factor IBA57) is a gene that encodes a protein iron-sulfur clusters which is crucial for mitochondrial maturation, mutation in these genes cause mitochondrial dysfunction. Clinical indication varies from neonatal lethality to childhood-onset spastic paraparesis resulting from mitochondrial dysfunctions. We reprogrammed fibroblasts from a patient carrying an IBA57 variant (c.338A>G) into induced pluripotent stem cells (iPSCs). The generated iPSCs showed a normal karyotype, positive expression for markers of undifferentiated hPSCs and were able to differentiate into three germ layers in vitro. The established NIMHi020-A iPSCs can be utilized for modelling neuromuscular disorders.
IBA57(铁硫簇组装因子IBA57)是一种编码蛋白质铁硫簇的基因,对线粒体成熟至关重要,这些基因的突变会导致线粒体功能障碍。临床适应症从新生儿致死性到由线粒体功能障碍引起的儿童期痉挛性截瘫不等。我们将携带IBA57变体(c.338A>G)的患者的成纤维细胞重编程为诱导多能干细胞(iPSCs)。生成的多能干细胞核型正常,未分化多能干细胞标记物表达阳性,并能在体外分化为三种胚层。建立的NIMHi020-A iPSCs可用于神经肌肉疾病的建模。
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引用次数: 0
Generation of induced pluripotent stem cell line UJSi005-A from developmentally delayed schizophrenic patients 发育迟缓性精神分裂症患者诱导多能干细胞UJSi005-A的生成
IF 0.7 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-13 DOI: 10.1016/j.scr.2025.103854
Xuan Xu , Bing Xue , Dingqi Zhang , Yupeng Wang , Bonan Chen , Zhenghua Shan , Wenzhuo Zhao , Tianxiao Qiu , Jing Sun , Shengying Qin
Schizophrenia, a chronic mental health condition, is characterized by abnormalities in perception, emotions and behavior. We successfully generated induced pluripotent stem cells (iPSCs) from the peripheral blood mononuclear cells (PBMCs) of a patient with schizophrenia and neurodevelopmental delay who responded well to olanzapine therapy. The iPSCs exhibited a normal karyotype, expressed markers of undifferentiated human pluripotent stem cells (hPSCs), and differentiated into the three germ layers in vivo.
精神分裂症是一种慢性精神健康状况,其特征是感知、情绪和行为异常。我们成功地从一名对奥氮平治疗反应良好的精神分裂症和神经发育迟缓患者的外周血单个核细胞(pbmc)中产生了诱导多能干细胞(iPSCs)。iPSCs具有正常的核型,表达未分化的人多能干细胞(hPSCs)的标记物,并在体内分化为三个胚层。
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引用次数: 0
Generation of an induced pluripotent stem cell line from a patient with Varicose veins 静脉曲张患者诱导多能干细胞系的生成
IF 0.7 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-09 DOI: 10.1016/j.scr.2025.103850
Chikage Noishiki , Amit Manhas , Shaunak S. Adkar , Dipti Tripathi , David Wu , Safa Sadat , Lu Liu , Karim Sallam , Nicholas J. Leeper , Eri Fukaya , Nazish Sayed
Chronic venous disease is among the most common vascular diseases globally. Varicose veins (VV), characterized by permanent dilation, elongation, and tortuosity of superficial veins, is a manifestation of chronic venous disease. Here, we generated an induced pluripotent stem cell (iPSC) line from PBMCs obtained from a patient with VV. The iPSC line exhibited typical morphology, maintained undifferentiated hPSC state markers, demonstrated a normal karyotype, and successfully differentiated into all three germ layers. This iPSC line provides a valuable platform to model VV pathogenesis and investigate the molecular mechanisms underlying venous dysfunction.
慢性静脉疾病是全球最常见的血管疾病之一。静脉曲张(VV)是慢性静脉疾病的一种表现,其特征是浅表静脉的永久性扩张、伸长和扭曲。在这里,我们从VV患者的pbmc中获得了诱导多能干细胞(iPSC)系。iPSC细胞系表现出典型的形态,保持未分化的hPSC状态标记,表现出正常的核型,并成功分化为所有三个胚层。该iPSC系为VV发病机制的建模和研究静脉功能障碍的分子机制提供了一个有价值的平台。
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引用次数: 0
Generation of two isogenic induced pluripotent stem cell lines derived from a Hispanic individual with Alzheimer’s Disease and mosaic for loss of the Y chromosome 从患有阿尔茨海默病的西班牙人身上获得的两种等基因诱导多能干细胞系的产生和Y染色体缺失的嵌合。
IF 0.7 4区 医学 Q4 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-10-09 DOI: 10.1016/j.scr.2025.103851
Holly N. Cukier , Brooke A. DeRosa , Lauren E. Coombs , Eugene Tang , Denise R. Leyva , Ainnara R. Lazzaro , Esther Gu , Derek M. Dykxhoorn , Jonathan L. Haines , Margaret A. Pericak-Vance , Yeunjoo E. Song , William S. Bush , Anthony J. Griswold
Mosaic loss of the Y chromosome (LOY) is a somatic phenomenon that occurs in males as they age (Jacobs, 1963, Forsberg, 2017, Danielsson, 2020) and is associated with an elevated risk of developing numerous diseases, including Alzheimer’s Disease (AD) (Dumanski, 2016, Palmer, et al., 2022, Garcia-Gonzalez, 2023), cancer (Holmes, 1985, Loftfield, 2018), diabetes (Loftfield, 2018), age related macular degeneration (Grassmann, 2019), and autoimmune disease (Persani, 2012, Lleo, 2013). The induced pluripotent cell lines (iPSCs) UMi050-A and UMi050-B were derived from a Hispanic male with loss of the Y chromosome in his blood and diagnosed with AD. This isogenic pair of lines with and without a Y chromosome is a unique resource to delve into the mechanism of LOY and its relationship to AD risk.
Y染色体的马赛克缺失(LOY)是男性随着年龄增长而发生的一种体细胞现象(Jacobs, 1963; Forsberg, 2017; Danielsson, 2020),并与多种疾病的发病风险增加有关,包括阿尔茨海默病(AD) (Dumanski, 2016; Palmer等人,2022;garia - gonzalez, 2023)、癌症(Holmes, 1985; Loftfield, 2018)、糖尿病(Loftfield, 2018)、年龄相关性黄斑变性(Grassmann, 2019)和自身免疫性疾病(Persani, 2012; Lleo, 2013)。诱导多能细胞系(iPSCs) UMi050-A和UMi050-B来自一名血液中Y染色体缺失并被诊断为AD的西班牙裔男性。这对具有和不具有Y染色体的等基因系是深入研究LOY机制及其与AD风险关系的独特资源。
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引用次数: 0
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Stem cell research
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