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Leaf shape is a predictor of fruit quality and cultivar performance in tomato 叶片形状是番茄果实品质和栽培性能的一个预测指标
Pub Date : 2019-03-21 DOI: 10.1101/584466
S. Rowland, Kristina Zumstein, Hokuto Nakayama, Zizhang Cheng, Amber M. Flores, D. Chitwood, J. Maloof, N. Sinha
Commercial tomato (Solanum lycopersicum) is one of the most widely grown vegetable crops worldwide. Heirloom tomatoes retain extensive genetic diversity and a considerable range of fruit quality and leaf morphological traits. Here the role of leaf morphology was investigated for its impact on fruit quality. Heirloom cultivars were grown in field conditions and BRIX by Yield (BY) and other traits measured over a fourteen-week period. The complex relationships among these morphological and physiological traits were evaluated using PLS-Path Modeling, and a consensus model developed. Photosynthesis contributed strongly to vegetative biomass and sugar content of fruits but had a negative impact on yield. Conversely leaf shape, specifically rounder leaves, had a strong positive impact on both fruit sugar content and yield. Cultivars such as Stupice and Glacier, with very round leaves, had the highest performance in both fruit sugar and yield. Our model accurately predicted BY for two commercial cultivars using leaf shape data as input. This study revealed the importance of leaf shape to fruit quality in tomato, with rounder leaves having significantly improved fruit quality. This correlation was maintained across a range of diverse genetic backgrounds and shows the importance of leaf morphology in tomato crop improvement.
商品番茄(Solanum lycopersicum)是全球种植最广泛的蔬菜作物之一。传家宝番茄保留了广泛的遗传多样性和相当范围的果实品质和叶片形态特征。本文研究了叶片形态对果实品质的影响。传家宝品种在田间条件下生长,并在14周的时间内通过产量和其他性状测量BRIX。利用PLS-Path模型评估了这些形态和生理性状之间的复杂关系,并建立了共识模型。光合作用对果实营养生物量和含糖量贡献较大,但对产量影响较小。相反,叶片形状,特别是更圆的叶片,对果实含糖量和产量都有很强的正影响。叶片非常圆的Stupice和Glacier等品种在果糖和产量方面表现最好。我们的模型使用叶片形状数据作为输入,准确地预测了两个商业品种的BY。本研究揭示了番茄叶片形状对果实品质的重要性,叶片越圆,果实品质越好。在不同的遗传背景下,叶片形态在番茄作物改良中的重要性得到了证实。
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引用次数: 31
Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass 多实验室EcoFAB研究表明,模型草对土壤代谢物的生理和耗竭具有高度可重复性
Pub Date : 2018-10-05 DOI: 10.1101/435818
Joelle Sasse, Josefine Kant, Benjamin J. Cole, Andrew P. Klein, Borjana Arsova, Pascal Schlaepfer, Jian Gao, K. Lewald, Kateryna Zhalnina, S. Kosina, B. Bowen, D. Treen, J. Vogel, A. Visel, M. Watt, J. Dangl, T. Northen
There is a dynamic reciprocity between plants and their environment: On one hand, the physiochemical properties of soil influence plant morphology and metabolism, while on the other, root morphology and exudates shape the environment surrounding roots. Here, we investigate both of these aspects as well as the reproducibility of these responses across laboratories. The model grass Brachypodium distachyon was grown in phosphate-sufficient and phosphate-deficient mineral media, as well as in sterile soil extract, within fabricated ecosystem (EcoFAB) devices across four laboratories. Tissue weight and phosphate content, total root length, root tissue and exudate metabolic profiles were found to be consistent across laboratories and distinct between experimental treatments. Plants grown in soil extract were morphologically and metabolically distinct in all laboratories, with root hairs four times longer compared to other growth conditions. Further, plants depleted half of the investigated metabolites from the soil extract. To interact with their environment, plants not only adapt morphology and release complex metabolite mixtures; they also selectively deplete a range of soil-derived metabolites. The EcoFABs utilized here generated high inter-laboratory reproducibility, demonstrating that their value in standardized investigations of plant traits.
植物与环境之间存在着动态的互易关系:一方面,土壤的理化性质影响着植物的形态和代谢,另一方面,根系的形态和分泌物塑造着根系周围的环境。在这里,我们调查这两个方面,以及这些反应的可重复性跨实验室。在四个实验室的预制生态系统(EcoFAB)装置中,将模型草短柄草(Brachypodium distachyon)生长在富磷和缺磷的矿物介质中,以及无菌土壤提取物中。组织重量和磷酸盐含量、根总长度、根组织和渗出物代谢谱在实验室之间是一致的,在不同的处理之间是不同的。在所有实验室中,在土壤提取物中生长的植物在形态和代谢方面都是不同的,根毛比在其他生长条件下长四倍。此外,植物从土壤提取物中消耗了一半的被调查代谢物。为了与环境相互作用,植物不仅调整形态并释放复杂的代谢混合物;它们还选择性地消耗一系列土壤衍生的代谢物。本研究使用的EcoFABs具有很高的实验室间重复性,证明了它们在植物性状标准化研究中的价值。
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引用次数: 49
Arabidopsis Lunapark proteins are involved in ER cisternae formation 拟南芥Lunapark蛋白参与内质网池的形成
Pub Date : 2018-01-31 DOI: 10.1101/256743
V. Kriechbaumer, E. Breeze, Charlotte Pain, Frances Tolmie, L. Frigerio, C. Hawes
The plant endoplasmic reticulum (ER) is crucial to the maintenance of cellular homeostasis. The ER consists of a dynamic and continuously remodelling network of tubules and cisternae. Several conserved membrane proteins have been implicated in formation and maintenance of the ER network in plants, such as RHD3 and the reticulon family of proteins. Despite the recent work in mammalian and yeast cells, the detailed molecular mechanisms of ER network organisation in plants still remain largely unknown. Recently novel ER network-shaping proteins called Lunapark have been identified in yeast and mammalian cells. Here we identify two arabidopsis LNP homologues and investigate their subcellular localisation via confocal microscopy and potential function in shaping the ER network using protein-protein interaction assays and mutant analysis. We show that AtLNP1 overexpression in tobacco leaf epidermal cells mainly labels the three-way junctions (trivia) of the ER network whereas AtLNP2 labels the whole ER. Overexpression of LNP proteins results in an increased abundance of ER cisternae and an lnp1lnp2 amiRNA line displays a less structured ER network. Thus, we hypothesize that AtLNP1 and AtLNP2 are involved in determining the dynamic morphology of the plant ER, possibly by regulating the formation of ER cisternae.
植物内质网(ER)对维持细胞内稳态至关重要。内质网由一个动态和不断重塑的小管和池组成。一些保守的膜蛋白参与植物内质网的形成和维持,如RHD3和网状蛋白家族。尽管最近在哺乳动物和酵母细胞中进行了研究,但植物内质网组织的详细分子机制仍然很大程度上未知。最近在酵母和哺乳动物细胞中发现了一种名为Lunapark的新型内质网形成蛋白。在这里,我们鉴定了两个拟南芥LNP同源物,并通过共聚焦显微镜研究了它们的亚细胞定位,并使用蛋白质-蛋白质相互作用测定和突变分析研究了它们在形成内质网中的潜在功能。我们发现AtLNP1在烟叶表皮细胞中的过表达主要标记内质网的三向连接(琐事),而AtLNP2标记整个内质网。LNP蛋白的过表达导致内质网池丰度增加,lnp1lnp2 amiRNA系显示出结构较差的内质网网络。因此,我们假设AtLNP1和AtLNP2参与决定植物内质网的动态形态,可能通过调节内质网池的形成。
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引用次数: 23
The stripe rust fungal effector PEC6 suppresses pattern-triggered immunity in a host species-independent manner and interacts with adenosine kinases. 条锈病真菌效应子 PEC6 以一种与宿主物种无关的方式抑制模式触发免疫,并与腺苷激酶相互作用。
Pub Date : 2016-06-02 DOI: 10.1111/nph.14034
Changhai Liu, Carsten Pedersen, Torsten Schultz-Larsen, Geziel B Aguilar, Kenneth Madriz-Ordeñana, Mogens S Hovmøller, Hans Thordal-Christensen

We identified a wheat stripe rust (Puccinia striiformis) effector candidate (PEC6) with pattern-triggered immunity (PTI) suppression function and its corresponding host target. PEC6 compromised PTI host species-independently. In Nicotiana benthamiana, it hampers reactive oxygen species (ROS) accumulation and callose deposition induced by Pseudomonas fluorescens. In Arabidopsis, plants expressing PEC6 were more susceptible to Pseudomonas syringae pv. tomato (Pto) DC3000 ΔAvrPto/ΔAvrPtoB. In wheat, PEC6-suppression of P. fluorescens-elicited PTI was revealed by the fact that it allowed activation of effector-triggered immunity by Pto DC3000. Knocking down of PEC6 expression by virus-mediated host-induced gene silencing decreased the number of rust pustules, uncovering PEC6 as an important pathogenicity factor. PEC6, overexpressed in plant cells without its signal peptide, was localized to the nucleus and cytoplasm. A yeast two-hybrid assay showed that PEC6 interacts with both wheat and Arabidopsis adenosine kinases (ADKs). Knocking down wheat ADK expression by virus-induced gene silencing reduced leaf growth and enhanced the number of rust pustules, indicating that ADK is important in plant development and defence. ADK plays essential roles in regulating metabolism, cytokinin interconversion and methyl transfer reactions, and our data propose a model where PEC6 may affect one of these processes by targeting ADK to favour fungal growth.

我们发现了一种具有模式触发免疫(PTI)抑制功能的候选小麦条锈病(Puccinia striiformis)效应子(PEC6)及其相应的宿主靶标。PEC6 影响 PTI 的宿主物种无关。在烟草中,它阻碍荧光假单胞菌诱导的活性氧(ROS)积累和胼胝质沉积。在拟南芥中,表达 PEC6 的植株更容易受到 Pseudomonas syringae pv. tomato (Pto) DC3000 ΔAvrPto/ΔAvrPtoB 的侵害。在小麦中,PEC6对荧光假丝酵母菌诱导的PTI的抑制作用表现在它允许Pto DC3000激活效应器触发的免疫。通过病毒介导的宿主诱导基因沉默来敲除 PEC6 的表达,可减少锈病脓疱的数量,从而发现 PEC6 是一个重要的致病因子。在植物细胞中过表达的PEC6不含信号肽,定位于细胞核和细胞质。酵母双杂交试验表明,PEC6 与小麦和拟南芥腺苷激酶(ADKs)都有相互作用。通过病毒诱导的基因沉默敲低小麦 ADK 的表达会降低叶片生长并增加锈病脓疱的数量,这表明 ADK 在植物发育和防御中具有重要作用。ADK 在调节新陈代谢、细胞分裂素相互转化和甲基转移反应中发挥着重要作用,我们的数据提出了一个模型,即 PEC6 可能通过靶向 ADK 来影响这些过程之一,从而有利于真菌生长。
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引用次数: 0
Proceedings of the 10th ISPA (International Society for Plant Anaerobiosis) Conference. June 20-25, 2010. Volterra, Italy. 第10届ISPA(国际植物厌氧学会)会议记录。2010年6月20日至25日。沃尔泰拉,意大利。
Pub Date : 2011-04-01
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引用次数: 0
Holy alliances? 神圣联盟吗?
Pub Date : 2007-01-01 DOI: 10.2307/j.ctt1zxsj45.13
B. Osborne
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引用次数: 1
Ni2+ induces changes in the morphology of vacuoles, mitochondria and microtubules in Paxillus involutus cells. Ni2+诱导了珙桐细胞液泡、线粒体和微管的形态变化。
Pub Date : 2006-01-01 DOI: 10.1111/j.1469-8137.2005.01626.x
Sandra Tuszyńska

Organelles of ectomycorrhizal fungi are known to respond to changes in the extracellular environment. The response of vacuoles, mitochondria and microtubules to short-term nickel (Ni2+) exposure were investigated in hyphal tip cells of a Paxillus involutus from a heavy metal-rich soil. Vacuoles, mitochondria and microtubules were labelled with Oregon Green 488 carboxylic acid diacetate, 3,3'-dihexyloxacarbocyanine iodide (DiOC6(3)) and anti-alpha-tubulin antibodies, respectively; hyphae were treated with NiSO4 in the range of 0-1 mmol l(-1) and examined microscopically. Untreated hyphal tip cells contained tubular vacuole and mitochondrial networks. Ni2+ caused loss of organelle tubularity and severe microtubule disruption that were exposure-time and concentration dependent. Fine tubular vacuoles thickened and eventually became spherical in some hyphae, tubular mitochondria fragmented and microtubules shortened and aggregated into patches in most hyphae. Tubular vacuoles reformed on NiSO4 removal and tubular mitochondria in the presence of NiSO4 suggesting cellular detoxification. These results demonstrate that Ni2+ induces changes in organelle and microtubule morphology. Recovery of tubular organelles to pretreatment morphology after Ni2+ exposure suggests cellular detoxification of the metal ion.

众所周知,外生菌根真菌的细胞器对细胞外环境的变化作出反应。研究了在富重金属土壤中培养的一株珙桐(Paxillus involutus)菌丝尖端细胞中液泡、线粒体和微管对镍(Ni2+)短期暴露的响应。液泡、线粒体和微管分别用俄勒冈绿488羧酸二乙酸酯、3,3′-二己基氧羰基氰碘(DiOC6(3))和抗α -微管蛋白抗体标记;用0 ~ 1 mmol l(-1)的NiSO4处理菌丝,显微镜下观察。未经处理的菌丝尖端细胞含有管状液泡和线粒体网络。Ni2+引起细胞器管性丧失和严重的微管破坏,这是暴露时间和浓度依赖的。部分菌丝的细管状液泡增厚并最终变成球形,大部分菌丝的管状线粒体碎裂,微管缩短并聚集成斑块。在NiSO4的存在下,管状液泡和管状线粒体在NiSO4的作用下发生了重组,表明细胞解毒作用。这些结果表明,Ni2+诱导细胞器和微管形态的变化。Ni2+暴露后,管状细胞器恢复到预处理形态,表明细胞对金属离子有解毒作用。
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引用次数: 0
Temperature and leaf wetness duration affect phenotypic expression of Rlm6-mediated resistance to Leptosphaeria maculans in Brassica napus. 温度和叶片湿润时间影响rlm6介导的甘蓝型油菜对黄斑细螺旋体抗性的表型表达。
Pub Date : 2006-01-01 DOI: 10.1111/j.1469-8137.2005.01651.x
Yong-Ju Huang, Neal Evans, Zi-Qin Li, Maria Eckert, Anne-Marie Chèvre, Michel Renard, Bruce D L Fitt

Near-isogenic Brassica napus lines carrying/lacking resistance gene Rlm6 were used to investigate the effects of temperature and leaf wetness duration on phenotypic expression of Rlm6-mediated resistance. Leaves were inoculated with ascospores or conidia of Leptosphaeria maculans carrying the effector gene AvrLm6. Incubation period to the onset of lesion development, number of lesions and lesion diameter were assessed. Symptomless growth of L. maculans from leaf lesions to stems was investigated using a green fluorescent protein (GFP) expressing isolate carrying AvrLm6. L. maculans produced large grey lesions on Darmor (lacking Rlm6) at 5-25 degrees C and DarmorMX (carrying Rlm6) at 25 degrees C, but small dark spots and 'green islands' on DarmorMX at 5-20 degrees C. With increasing temperature/wetness duration, numbers of lesions/spots generally increased. GFP-expressing L. maculans grew from leaf lesions down leaf petioles to stems on DarmorMX at 25 degrees C but not at 15 degrees C. We conclude that temperature and leaf wetness duration affect the phenotypic expression of Rlm6-mediated resistance in leaves and subsequent L. maculans spread down petioles to produce stem cankers.

利用携带或缺乏Rlm6抗性基因的近等基因甘蓝型油菜株系,研究了温度和叶片湿润时间对Rlm6介导的抗性表型表达的影响。用携带效应基因AvrLm6的斑点细粒绦虫子囊孢子或分生孢子接种叶片。评估了从潜伏期到病变开始发展,病变数量和病变直径。利用携带AvrLm6的绿色荧光蛋白(GFP)表达分离物,研究了黄斑乳杆菌从叶片病变到茎部的无症状生长。5-25℃时,斑马病菌在Darmor(缺乏Rlm6)和25℃时,在DarmorMX(携带Rlm6)上产生较大的灰色病变,而在5-20℃时,在DarmorMX上产生小的黑斑和“绿岛”。随着温度/湿度持续时间的增加,病变/斑点的数量普遍增加。在25℃而不是15℃条件下,表达gfp的斑马病菌在DarmorMX上从叶柄向下生长到茎部。我们得出结论,温度和叶片湿润时间影响叶片中rlm6介导的抗性的表型表达,随后斑马病菌沿着叶柄向下扩散产生茎溃疡病。
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引用次数: 0
Glutathione reductase from pea leaves: response to abiotic stress and characterization of the peroxisomal isozyme. 豌豆叶中的谷胱甘肽还原酶:对非生物胁迫的反应和过氧异构体同工酶的特征。
Pub Date : 2006-01-01 DOI: 10.1111/j.1469-8137.2006.01643.x
María C Romero-Puertas, Francisco J Corpas, Luisa M Sandalio, Marina Leterrier, María Rodríguez-Serrano, Luis A Del Río, José M Palma

The glutathione reductase (GR; EC 1.6.4.2) isozyme present in peroxisomes has been purified for the first time, and its unequivocal localization in these organelles, by immunogold electron microscopy, is reported. The enzyme was purified c. 21-fold with a specific activity of 9523 units mg(-1) protein, and a yield of 44 microg protein kg(-1) leaves was obtained. The subunit size of the peroxisomal GR was 56 kDa and the isoelectric point was 5.4. The enzyme was recognized by a polyclonal antibody raised against total GR from pea (Pisum sativum) leaves. The localization of GR in peroxisomes adds to chloroplasts and mitochondria where GR isozymes are also present, and suggests a multiple targeting of this enzyme to distinct cell compartments depending on the metabolism of each organelle under the plant growth conditions. The expression level of GR in several organs of pea plants and under different stress conditions was investigated. The possible role of peroxisomal GR under abiotic stress conditions, such as cadmium toxicity, high light, darkness, high temperature, wounding and low temperature, is discussed.

首次纯化了存在于过氧物酶体中的谷胱甘肽还原酶(GR;EC 1.6.4.2)同工酶,并通过免疫金电子显微镜报告了它在这些细胞器中的明确定位。该酶纯化了约 21 倍,比活度为 9523 单位毫克(-1)蛋白质,产量为 44 微克蛋白质千克(-1)叶片。过氧化物酶体 GR 的亚单位大小为 56 kDa,等电点为 5.4。针对豌豆(Pisum sativum)叶片总 GR 的多克隆抗体可识别该酶。GR在过氧物酶体中的定位增加了叶绿体和线粒体中GR同工酶的含量,这表明在植物生长条件下,根据各细胞器的新陈代谢情况,该酶有多种不同的细胞区系定位。研究人员调查了不同胁迫条件下 GR 在豌豆植物多个器官中的表达水平。讨论了过氧物酶体 GR 在镉毒性、强光、黑暗、高温、受伤和低温等非生物胁迫条件下可能发挥的作用。
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引用次数: 0
Mapping quantitative trait loci associated with selenate tolerance in Arabidopsis thaliana. 拟南芥硒酸盐耐受性相关数量性状位点的定位。
Pub Date : 2006-01-01 DOI: 10.1111/j.1469-8137.2006.01635.x
Lihong Zhang, Patrick F Byrne, Elizabeth A H Pilon-Smits

Selenium is essential for many organisms, but is toxic at higher levels. To investigate the genetic basis of selenate tolerance in Arabidopsis thaliana, quantitative trait loci (QTL) associated with selenate tolerance in accessions Landsberg erecta and Columbia were mapped using recombinant inbred lines (RILs). The selenate tolerance index (TI(D10) = root growth + 30 microm selenate/root growth control x 100%) was fourfold higher for parental line Col-4 (59%) than for parent Ler-0 (15%). Among the 96 F8 RILs, TI(D10) ranged from 11 to 75% (mean 37%). Using composite interval mapping, three QTL were found on chromosomes 1, 3 and 5, which together explained 24% of variation in TI(D10) and 32% of the phenotypic variation for the difference in root length +/- Se (RL(D10)). Highly significant epistatic interactions between the QTL and markers on chromosome 2 explained additional variation for both traits. Potential candidate genes for Se tolerance in each of the QTL regions are discussed. These results offer insight into the genetic basis of selenate tolerance, and may be useful for identification of selenate-tolerance genes.

硒对许多生物都是必需的,但浓度过高就会中毒。为了研究拟南芥(Arabidopsis thaliana)硒酸盐耐受性的遗传基础,利用重组自交系(RILs)对Landsberg erecta和Columbia的硒酸盐耐受性相关的数量性状位点(QTL)进行了定位。亲本Col-4的硒酸盐耐受指数(TI(D10) =根生长+ 30微米硒酸盐/根生长对照× 100%)为59%,是亲本Ler-0的4倍(15%)。在96例F8 ril中,TI(D10)范围为11%至75%(平均37%)。利用复合区间定位,在1、3、5染色体上发现了3个QTL,这3个QTL共同解释了24%的TI变异(D10)和32%的根长+/- Se差异(RL(D10))的表型变异。2号染色体上QTL和标记之间高度显著的上位性相互作用解释了这两个性状的额外变异。讨论了每个QTL区域中硒耐受性的潜在候选基因。这些结果有助于深入了解硒酸盐耐受性的遗传基础,并可能为硒酸盐耐受性基因的鉴定提供参考。
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引用次数: 0
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