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Return of the organism? The concept in plant biology, now and then 生物的回归?植物生物学中的这一概念
IF 2.6 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-05-02 DOI: 10.1007/s40626-024-00334-3
Özlem Yilmaz

This essay argues for the importance of an organismic perspective in plant biology and considers some of its implications. These include an increased attention to plant-environment interaction and an emphasis on integrated approaches. Furthermore, this essay contextualizes the increased emphasis on the concept of organism in recent years and places the concept in a longer history. Recent developments in biology and worsening environmental crises have led researchers to study plant responses to changing environments with whole plant approaches that situate plants in their environments, emphasizing the intricate and dynamic interaction between them. This renewed attention to the organism recalls the debates of the early twentieth century, when organicism was one of the three main frameworks in biology (along with vitalism and mechanism). Some scholars see this renewed importance today as a “return” of this earlier period. This essay argues that including insights from plant biology will benefit philosophy of biology research that examines the concept of organism and organicism now and in earlier periods. A comprehensive account of the concept of organism should involve a botanical conception of the organism as well as a zoological one (which is more frequently considered). Although this essay does not aim to present a conceptual analysis, it presents examples of how an organismic perspective can be useful for understanding concepts (such as phenotype, stress, etc.) and research processes (such as experiment set-ups, data processes, etc.) in plant biology. Philosophy of biology investigations that aim at a comprehensive understanding of the concept of organism can benefit greatly from examinations of cases in plant biology, both now and in the past.

本文论证了有机体视角在植物生物学中的重要性,并探讨了它的一些影响。这些影响包括更加关注植物与环境之间的相互作用以及强调综合方法。此外,这篇文章还将近年来对有机体概念的日益强调与背景联系起来,并将这一概念置于更长的历史中。生物学的最新发展和日益恶化的环境危机促使研究人员采用全植物方法研究植物对环境变化的反应,这种方法将植物置于环境中,强调植物与环境之间错综复杂的动态互动。这种对有机体的重新关注让人回想起二十世纪初的争论,当时有机主义是生物学的三大框架之一(与生命主义和机制并列)。一些学者认为,今天重新重视有机体是这一早期时期的 "回归"。本文认为,纳入植物生物学的见解将有利于生物学哲学研究对有机体和有机论概念的审视。对有机体概念的全面论述应包括植物学的有机体概念和动物学的有机体概念(动物学的有机体概念更常被考虑)。虽然本文的目的不是进行概念分析,但它举例说明了有机体观点如何有助于理解植物生物学中的概念(如表型、应激等)和研究过程(如实验设置、数据处理等)。以全面理解有机体概念为目标的生物学哲学研究可以从植物生物学的案例研究中获益匪浅,无论是现在还是过去。
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引用次数: 0
Thermal sensitivity determines the effect of high CO2 on carbon uptake in Populus tremula and Inga edulis 热敏感性决定了高二氧化碳对杨树和莺歌树碳吸收的影响
IF 2.6 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-05-02 DOI: 10.1007/s40626-024-00312-9
Vinícius Fernandes de Souza, Bahtijor Rasulov, Eero Talts, Catherine Morfopoulos, Patrícia Melchionna Albuquerque, Sergio Duvoisin Junior, Ülo Niinemets, José Francisco de Carvalho Gonçalves
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引用次数: 0
Cotyledons as the primary source of carbon and mineral nutrients during early growth of a savanna tree 子叶是热带稀树草原树木早期生长过程中碳和矿物质养分的主要来源
IF 2.6 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-04-27 DOI: 10.1007/s40626-024-00320-9
Tayara Colins Nunes, Cristiane Silva Ferreira, Thomas Christopher Rhys Williams, Augusto Cesar Franco

Seed reserves are a significant source of essential elements and carbon for seedlings. Trees in the Cerrado vegetation (known as ‘Brazilian savanna’) of Central Brazil are subjected to seasonal drought and grow on dystrophic soils, suggesting that seedlings are dependent on seed reserves for rapid development in the growing season to thrive during the subsequent dry season. However, little is known about the role of cotyledon reserves as a source of carbon and mineral nutrients for recently germinated tree seedlings in the Cerrado. We tested the effects of removing one cotyledon 11 days after germination on growth, biomass distribution, carbon and mineral nutrient stocks of seedlings of Magonia pubescens (Sapindaceae), a large-seeded, anemochorous tree. Seedlings were grown in nutrient-deficient and nutrient-enriched sand for 120 days. For most mineral nutrients (N, P, K, Mg, S, B, Cu and Zn), the stocks in the seeds would be sufficient for seedling development. However, the amounts of Ca, Fe and Mn in the seeds would not be sufficient to meet the needs for plant growth at early stages and must be absorbed from the soil. Fatty acids and soluble sugars were the main carbon reserves in the seeds. The fatty acids were rapidly consumed in the early stages of seedling development. On the other hand, seedlings stored carbon as soluble sugars and starch. Removing one of the cotyledons led to a significant decline in growth, biomass accumulation and mineral nutrient stocks. Fertilization did not reverse the effects of removing one of the cotyledons or increased growth.

种子储备是幼苗必需元素和碳的重要来源。巴西中部塞拉多植被(被称为 "巴西稀树草原")中的树木受到季节性干旱的影响,并生长在营养不良的土壤上,这表明幼苗在生长季节依靠种子储备快速生长,以便在随后的干旱季节茁壮成长。然而,人们对子叶储备作为塞拉多地区新发芽树苗的碳和矿质营养源的作用知之甚少。我们测试了在无患子科大种子树木 Magonia pubescens(无患子科)幼苗发芽 11 天后去掉一片子叶对其生长、生物量分布、碳和矿质营养储量的影响。幼苗在营养缺乏和营养丰富的沙地中生长了 120 天。对于大多数矿质营养元素(氮、磷、钾、镁、硫、硼、铜和锌)而言,种子中的储量足以满足幼苗生长的需要。不过,种子中的钙、铁和锰不足以满足植物早期生长的需要,必须从土壤中吸收。脂肪酸和可溶性糖是种子中的主要碳储备。脂肪酸在幼苗生长初期消耗很快。另一方面,幼苗以可溶性糖和淀粉的形式储存碳。去掉其中一片子叶会导致生长、生物量积累和矿质营养储备显著下降。施肥并不能逆转去掉其中一片子叶的影响,也不能提高生长速度。
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引用次数: 0
13C labelling reveals details of the soybean (Glycine max (L.) Merrill) seedling metabolic network 13C 标记揭示了大豆(Glycine max (L.) Merrill)幼苗代谢网络的细节
IF 2.6 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-04-21 DOI: 10.1007/s40626-024-00326-3
Janderson Moraes de Lima, Vitoria Pinheiro Balestrini, Isabel Caroline Gomes Giannecchini, Guilherme Henrique Moss Barreto Corrêa de Oliveira, Thomas Christopher Rhys Williams

Seedlings depend upon seed reserves for the prevision of carbon skeletons for growth and energy production. Post-germinative growth of soybean is therefore marked by the breakdown of carbohydrates, proteins, and lipids and the interconversion of the products of these catabolic processes. Here, we refined a method for 13C isotope labelling of heterotrophic soybean seedlings and used it to probe metabolism during this critical phase of plant development. We anticipated that 13C labelling would reveal differences in metabolism between the cotyledons (COT) and hypocotyl-root axis (HRA). Feeding with U-13C glucose followed by analysis of isotope incorporation indicated uptake and metabolism of this labelled precursor by both COT and HRA. Fractional enrichments were generally greater in the HRA reflecting the catabolism of unlabelled reserves of lipids and proteins in COT. Mass isotopomer distributions confirmed operation of the TCA cycle and glycolysis along with hexose-phosphate cycling in both organs, whilst amino acid synthesis was limited, as expected, given the significant protein reserves. COT differed from HRA in TCA cycle citrate and anapleurotic metabolism. Experiments with 13C glycine indicated that glycine decarboxylase and serine hydroxymethyltransferase enzymes may function in heterotrophic tissues as well as in photorespiration. Labelling of the majority of metabolites was constant over time, suggesting that the experimental system could be used for metabolic flux analysis. Overall stable isotope labelling provided significant insight into metabolism of soybean seedlings and could be used to investigate seedling metabolism in other genotypes or species.

幼苗的生长和能量生产依赖于种子储备的碳骨架。因此,大豆发芽后生长的特点是碳水化合物、蛋白质和脂类的分解以及这些分解过程产物的相互转化。在这里,我们改进了对异养大豆幼苗进行 13C 同位素标记的方法,并用它来探究植物发育这一关键阶段的新陈代谢。我们预计 13C 标记将揭示子叶 (COT) 和下胚轴-根轴 (HRA) 之间新陈代谢的差异。用 U-13C 葡萄糖喂养,然后进行同位素掺入分析,结果表明 COT 和 HRA 都吸收并代谢了这种标记的前体。HRA 的富集分数通常更高,这反映出 COT 对未标记的脂质和蛋白质储备进行了分解代谢。质量同位素分布证实,TCA 循环和糖酵解以及磷酸己糖循环在这两个器官中都在运行,而氨基酸的合成则受到限制,这是预料之中的,因为蛋白质储备量很大。COT 在 TCA 循环柠檬酸盐和无脑代谢方面与 HRA 不同。13C 甘氨酸实验表明,甘氨酸脱羧酶和丝氨酸羟甲基转移酶可能在异养组织和光呼吸中发挥作用。大多数代谢物的标记在一段时间内保持不变,这表明该实验系统可用于代谢通量分析。总体而言,稳定同位素标记为了解大豆幼苗的新陈代谢提供了重要信息,可用于研究其他基因型或物种的幼苗新陈代谢。
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引用次数: 0
Flavone-rich Passiflora edulis fruit shells as urease inhibitors for sustainable agricultural solutions 富含黄酮的西番莲果壳作为脲酶抑制剂,为可持续农业提供解决方案
IF 2.6 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-04-20 DOI: 10.1007/s40626-024-00325-4
Sarah Ferreira Guimarães, Juliana Mendes Amorim, Thamara Ferreira Silva, Inorbert de Melo Lima, Jae-Han Shim, Rachel Oliveira Castilho, Luzia Valentina Modolo

Qualitative and quantitative methods were used to demonstrate how plant development stages impact flavonoid C-glycoside and tannin accumulation in Passiflora edulis (Passifloraceae). Distinct parts from juvenile to mature plants were analyzed. Thin-layer chromatography (TLC) and ultra-high performance liquid chromatography (UHPLC) were used to quantify flavonoids as vitexin and tannins as epicatechin, with total flavonoids assessed following the Brazilian Pharmacopoeia method. Ethanolic extracts were tested for urease inhibition. Leaf and fruit shell extracts shared similar flavonoid profiles containing apigenin, chrysin, and luteolin glycosides. Leaves consistently exhibited the highest flavonoid concentration (3.5% dry extract), with 3.6-fold more flavone glycosides than fruit shell extracts. Roots had the highest tannin concentration. Leaf and fruit shell extracts from flowering II plants inhibited urease by 57%. This underscores the significance of flavone C-glycosides as urease inhibitors. The study demonstrates the effective inhibition of ureases by P. edulis fruit shells, highlighting their significant potential for agricultural applications through waste valorization strategies.

本研究采用定性和定量的方法来说明植物的发育阶段如何影响西番莲(西番莲科)中类黄酮 C-糖苷和单宁的积累。分析了从幼苗到成熟植株的不同部分。采用薄层色谱法(TLC)和超高效液相色谱法(UHPLC)对黄酮类化合物(荆芥苷)和单宁类化合物(表儿茶素)进行量化,并按照巴西药典方法对总黄酮类化合物进行评估。乙醇提取物进行了脲酶抑制测试。叶片和果壳提取物中的类黄酮含量相似,都含有芹菜甙、菊甙和叶黄素甙。叶的黄酮类化合物浓度最高(3.5% 干提取物),黄酮苷含量是果壳提取物的 3.6 倍。根的单宁浓度最高。开花 II 期植物的叶和果壳提取物对脲酶的抑制率为 57%。这突出了黄酮 C-糖苷作为脲酶抑制剂的重要性。这项研究表明,P. edulis 果壳能有效抑制脲酶,突出了其通过废物价值化战略在农业应用方面的巨大潜力。
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引用次数: 0
DELLA proteins and CBL-CIPK signaling pathway are emerging players in plant biotechnology DELLA 蛋白和 CBL-CIPK 信号通路是植物生物技术领域的新兴力量
IF 2.6 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-04-16 DOI: 10.1007/s40626-024-00327-2
Aniruddha Acharya

CBL-CIPK signaling pathway is a calcium dependent signaling pathway conserved across the plant kingdom. Recent research indicates the central role it plays in growth, development, ion homeostasis and stress management in plants. DELLA proteins are negative regulators of gibberellins and almost ubiquitously influence several aspects of plant physiology. The important role of DELLA proteins in green revolution was discovered and very recently they are found to influence several aspects of root growth and root-microbe interactions. Thus, understanding the genetic network involving CBL-CIPK signaling pathway and DELLA proteins in plant roots can identify targets for biotechnological innovations. This may propel generation of transgenic lines with robust root system capable of efficient water and ion absorption with higher degree of selectivity and regulation. Plant improvement through breeding and genetic modifications have largely focused on the above-ground parts and there is a vast space for similar improvement concerning roots. CBL-CIPK and DELLA can serve as excellent genetic engineering candidates for climate smart agriculture, alleviation of hidden hunger, phytoremediation of heavy metals and environmental sustainability.

CBL-CIPK 信号通路是一种在整个植物界都保留下来的钙依赖性信号通路。最新研究表明,它在植物的生长、发育、离子平衡和胁迫管理中发挥着核心作用。DELLA 蛋白是赤霉素的负调控因子,几乎无处不在地影响着植物生理的多个方面。人们发现了 DELLA 蛋白在绿色革命中的重要作用,最近又发现它们影响根系生长和根系与微生物相互作用的多个方面。因此,了解植物根系中涉及 CBL-CIPK 信号通路和 DELLA 蛋白的遗传网络可以确定生物技术创新的目标。这可能会推动转基因品系的产生,这些品系具有强健的根系,能够以更高的选择性和调节性高效吸收水分和离子。通过育种和基因改造进行的植物改良主要集中在地上部分,而类似的根系改良还有广阔的空间。CBL-CIPK 和 DELLA 可以作为气候智能农业、缓解隐性饥饿、重金属植物修复和环境可持续发展的优秀基因工程候选品系。
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引用次数: 0
Correction to: The quest for time in plant physiology: a processual perspective 更正:植物生理学中的时间探索:过程视角
IF 2.6 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-04-16 DOI: 10.1007/s40626-024-00324-5
Gustavo Maia Souza, Douglas Antônio Posso, Thiago Francisco de Carvalho Oliveira
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引用次数: 0
Brazil nut tree increases photosynthetic activity and stem diameter growth after thinning 巴西坚果树在疏伐后增加光合作用和茎径增长
IF 2.6 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-04-15 DOI: 10.1007/s40626-024-00317-4
Igor Vinícius de Oliveira, Karen Cristina Pires da Costa, Adamir da Rocha Nina Junior, Josiane Celerino de Carvalho, José Francisco de Carvalho Gonçalves

Bertholletia excelsa Bonpl. is widely planted in the Amazon and information about thinning effects is poorly documented. Here, we investigate thinning effects on the ecophysiology of B. excelsa plantations. The thinning trial was set up as a randomized complete block design (RCBD) with two treatments (unthinned and thinned to 50% basal area removal). The canopy openness of plots thinned was two times higher than the unthinned treatment (control). B. excelsa under thinning growed three times in relation to trees of control. One week after thinning, we observed increase of 25% photosynthesis (PN), 100% respiration (Rd), 35% stomatal conductance (gs), and 25% transpiration (E). After thinning, we verified reduction of the maximum photochemical efficiency of photosystem II (FV/FM), with subsequent recovery. At the end of 5 months after thinning, the trees on thinned plots achieved values of leaf mass per area (LMA), nitrogen (Na), phosphorus (Pa), and potassium (Ka) about 27% higher than trees of unthinned plots. Thinning did not affect the midday leaf water potential (Ψw). Thinning increased the growth of B. excelsa influenced by photosynthetic performance and regulated by the gs, LMA, leaf Na, and Pa concentrations. Our findings demonstrated that thinning can be recommended for timber production under the dense planting of Brazil nut trees cultivated in degraded Amazonian areas.

Graphical abstract

Bertholletia excelsa Bonpl.广泛种植于亚马逊地区,但有关疏伐效果的资料却很少。在此,我们研究了疏伐对 B. excelsa 种植园生态生理学的影响。疏伐试验采用随机完全区组设计(RCBD),有两种处理(未疏伐和疏伐至基部面积去除 50%)。疏伐地块的树冠开阔度是未疏伐处理(对照)的两倍。与对照组相比,稀植处理下的 B. excelsa 的生长速度是对照组的三倍。疏伐一周后,我们观察到光合作用(PN)增加了 25%,呼吸作用(Rd)增加了 100%,气孔导度(gs)增加了 35%,蒸腾作用(E)增加了 25%。稀植后,我们发现光系统 II 的最大光化学效率(FV/FM)有所下降,但随后又有所恢复。疏伐后 5 个月,疏伐地块上树木的单位面积叶片质量(LMA)、氮(Na)、磷(Pa)和钾(Ka)值比未疏伐地块上的树木高出约 27%。疏伐并不影响正午叶片水势(Ψw)。疏伐提高了 B. excelsa 的生长,生长受光合作用的影响,并受 gs、LMA、叶片 Na 和 Pa 浓度的调节。我们的研究结果表明,在亚马孙河流域退化地区密植巴西坚果树的情况下,建议进行疏伐以生产木材。
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引用次数: 0
Non-destructive estimation of leaf moisture content of Epipremnum aureum based on electrical impedance spectroscopy 基于电阻抗光谱的 Epipremnum aureum 叶片含水量非破坏性评估
IF 2.6 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-04-13 DOI: 10.1007/s40626-024-00314-7
Qianxi Li, Lin Tang, Zhi Xue, Yong Feng, Hai Tan

Electrical impedance spectroscopy (EIS) is a technique used for detection of leaf moisture content (LMC). Generally, EIS is inconvenient and destructive. This paper proposed a non-destructive method for predicting LMC of Epipremnum aureum based on the impedance spectrocopy with the combination of ECG gel and needle electrodes. An effective equivalent circuit model for the corresponding gel contact method was established. The LMC model of E. aureum was obtained based on equivalent circuit parameters. The results demonstrated that there were two arcs in the Cole–Cole plots of the leaves measured by the gel contact method. The arc in the high frequency region reflected the impedance characteristics of the leaf, while the arc in the low frequency region was relevant to the impedance of the ECG gel and the polarization impedance caused by the contact with leaves. The gel contact model was suitable for fitting the leaf impedance spectroscopy measured by the gel contact method. The RR2 and RX2 for each R and X were both greater than 0.999. Meanwhile, the LMC prediction model based on extracellular resistance showed the best performance, with the coefficient of determination (R2) and root-mean-square error (RMSE) for prediction being 0.803, 0.0580, respectively.

电阻抗光谱法(EIS)是一种用于检测叶片含水量(LMC)的技术。一般来说,电阻抗光谱法不方便且具有破坏性。本文提出了一种非破坏性方法,基于心电图凝胶和针电极相结合的阻抗光谱法来预测 Epipremnum aureum 的 LMC。建立了相应凝胶接触法的有效等效电路模型。根据等效电路参数获得了金黄色葡萄球菌的 LMC 模型。结果表明,用凝胶接触法测量的叶片科尔-科尔图中有两个电弧。高频区的弧线反映了叶片的阻抗特性,而低频区的弧线则与心电图凝胶的阻抗和叶片接触引起的极化阻抗有关。凝胶接触模型适用于拟合用凝胶接触法测量的叶片阻抗谱。各 R 和 X 的 RR2 和 RX2 均大于 0.999。同时,基于细胞外电阻的 LMC 预测模型表现最佳,预测的判定系数(R2)和均方根误差(RMSE)分别为 0.803 和 0.0580。
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引用次数: 0
An overall review on influence of root architecture on soil carbon sequestration potential 根系结构对土壤固碳潜力的影响综述
IF 2.6 4区 生物学 Q2 PLANT SCIENCES Pub Date : 2024-04-08 DOI: 10.1007/s40626-024-00323-6
R. K. Srivastava, Ali Yetgin

Soil carbon sequestration is a vital ecosystem function that mitigates climate change by absorbing atmospheric carbon dioxide (CO2). Root characteristics such as depth, diameter, length, and branching pattern affect soil carbon dynamics through root-soil interactions and organic matter breakdown. Here we review field surveys, laboratory analysis, and mathematical modeling to understand how root structures affect soil carbon storage. Further, certain root features increase soil carbon sequestration, suggesting that selective breeding and genetic engineering of plants could maximize this ecological benefit. However, more research is needed to understand the complex interactions between roots, soil biota, and soil organic matter under changing environmental conditions. In addition, the benefit of climate change mitigation methods and soil carbon models from the inclusion of root architecture was reviewed. Studies in the realm of root-soil interactions encompass a variety of academic fields, including agronomy, ecology, soil science, and plant physiology. Insights into how roots interact with their soil environment and the effects of these interactions on plant health, agricultural productivity, and environmental sustainability have been gained through this research.

土壤固碳是生态系统的一项重要功能,它通过吸收大气中的二氧化碳(CO2)来减缓气候变化。根的深度、直径、长度和分枝模式等特征会通过根与土壤的相互作用和有机物分解影响土壤碳动态。在此,我们通过实地调查、实验室分析和数学建模来了解根系结构如何影响土壤碳储存。此外,某些根系特征会增加土壤固碳,这表明植物的选择性育种和基因工程可以最大限度地发挥这种生态效益。然而,要了解在不断变化的环境条件下根系、土壤生物区系和土壤有机质之间复杂的相互作用,还需要进行更多的研究。此外,还回顾了纳入根系结构对气候变化减缓方法和土壤碳模型的益处。根与土壤相互作用领域的研究涉及农学、生态学、土壤科学和植物生理学等多个学术领域。通过这些研究,我们深入了解了根系如何与其土壤环境相互作用,以及这些相互作用对植物健康、农业生产力和环境可持续性的影响。
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引用次数: 0
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Theoretical and Experimental Plant Physiology
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