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Foreword for the Festschrift on the occasion of the 65th birthday of Professor Pratim Kumar Chattaraj 普拉蒂姆-库马尔-查塔拉吉教授 65 岁诞辰纪念文集前言
IF 1.7 4区 化学 Q3 Chemistry Pub Date : 2024-02-01 DOI: 10.1007/s00214-024-03090-4
F. de Proft, Paul W. Ayers, Shubin Liu, A. Toro‐Labbé, Utpal Sarkar
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引用次数: 0
Foreword for the Festschrift on the occasion of the 65th birthday of Professor Pratim Kumar Chattaraj 普拉蒂姆-库马尔-查塔拉吉教授 65 岁诞辰纪念文集前言
IF 1.7 4区 化学 Q3 Chemistry Pub Date : 2024-02-01 DOI: 10.1007/s00214-024-03090-4
F. de Proft, Paul W. Ayers, Shubin Liu, A. Toro‐Labbé, Utpal Sarkar
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引用次数: 0
Using first-principles study on the characteristics of γ-GeSe as anode of sodium-ion battery 利用第一原理研究作为钠离子电池阳极的 γ-GeSe 的特性
IF 1.7 4区 化学 Q3 Chemistry Pub Date : 2024-01-30 DOI: 10.1007/s00214-024-03092-2
Kui Tang, Jianping Sun, Zhi Yang, Yuyang Liu, Yangbo Lv

γ-GeSe is a newly discovered two-dimensional (2D) material with exceptional electrical conductivity, which has generated significant interest in secondary ion battery. In this study, we have used first-principles calculations to evaluate the potential of γ-GeSe as an anode material for sodium-ion batteries. The results show that γ-GeSe has excellent stability properties with in-plane Young’s modulus as high as 30 Gpa and no imaginary frequencies in the phonon band spectrum. Upon adsorption of sodium, γ-GeSe undergoes a semiconductor-to-metal transition, enhancing electron conductivity. Moreover, Ab initio molecular dynamics calculations at room temperature (300 K) revealed the structural stability of γ-GeSe even after 10 ps of Na adsorption. We compute three distinct diffusion paths, with the lowest migration energy barrier of only 0.09 eV, indicating excellent migration rates. The calculated open-circuit voltage of 0.56 V (< 1 V) is crucial for anode material. Furthermore, the maximum theoretical capacity of γ-GeSe is determined to be 442 mAh/g. These findings provide valuable insights into the electrochemical energy storage potential of γ-GeSe as an anode material for sodium-ion battery.

γ-GeSe是一种新发现的二维(2D)材料,具有优异的导电性,在二次离子电池领域引起了极大的兴趣。在本研究中,我们利用第一性原理计算评估了γ-GeSe 作为钠离子电池负极材料的潜力。结果表明,γ-GeSe 具有出色的稳定性能,面内杨氏模量高达 30 Gpa,声子带谱中没有虚频。吸附钠后,γ-GeSe 会发生从半导体到金属的转变,从而增强电子导电性。此外,室温(300 K)下的 Ab initio 分子动力学计算显示,即使在吸附钠 10 ps 后,γ-GeSe 的结构仍然稳定。我们计算出了三种不同的扩散路径,最低的迁移能垒仅为 0.09 eV,表明迁移率极高。计算得出的开路电压为 0.56 V (< 1 V),这对阳极材料至关重要。此外,γ-GeSe 的最大理论容量被确定为 442 mAh/g。这些发现为γ-GeSe作为钠离子电池阳极材料的电化学储能潜力提供了宝贵的见解。
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引用次数: 0
Evaluation of picture change effects on fractional occupation number states in noble gas atoms 评估图像变化对惰性气体原子分数占位数状态的影响
IF 1.7 4区 化学 Q3 Chemistry Pub Date : 2024-01-27 DOI: 10.1007/s00214-023-03089-3

Abstract

In the two-component relativistic density functional theory, the picture change error (PCE), which originates from insufficient transformation of operators, should be corrected. In this study, we examine the PCE in the fractional occupation number (FON) state based on the spin-free infinite-order two-component Hamiltonian. The PCE for the total and orbital energy changes is estimated with respect to the FON electrons of the highest occupied molecular orbital and 1s core orbital in noble gas atoms. PCE is significant in core orbitals in heavy elements but relatively small in light elements and valence orbitals. The delocalization error, which can be represented by the total energy deviation from the behavior of the exact energy, is overestimated by the lack of picture change correction of the two-electron operator and underestimated by that of the density operator. Corresponding to these results, the PCE influences the value of orbital energies and slope of orbital energy change to FON.

摘要 在双分量相对论密度泛函理论中,由于算子变换不充分而产生的图象变化误差(PCE)应该得到纠正。在本研究中,我们基于无自旋无穷阶两分量哈密顿,考察了分数占据数(FON)态的 PCE。我们估算了惰性气体原子中最高占据分子轨道和 1s 核心轨道的 FON 电子的总能量和轨道能量变化的 PCE。PCE 在重元素的核心轨道中非常重要,但在轻元素和价轨道中相对较小。脱域误差可以用总能量偏离精确能量的行为来表示,由于缺乏双电子算子的图像变化校正而被高估,而密度算子的图像变化校正则被低估。与这些结果相对应,PCE 影响了轨道能量值和轨道能量变化对 FON 的斜率。
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引用次数: 0
Decoding the impact of solvents in altering the conversion rates and stereoselectivity in proline-catalyzed asymmetric aldol reaction 解码溶剂在改变脯氨酸催化不对称醛醇反应的转化率和立体选择性方面的影响
IF 1.7 4区 化学 Q3 Chemistry Pub Date : 2024-01-24 DOI: 10.1007/s00214-023-03088-4

Abstract

The choice of solvent plays a crucial role in aldol reactions, often affecting both the conversion rate and stereoselectivity. In this study, we investigated the influence of solvents (water, methanol and hydroalcoholic) on the proline-catalyzed aldol reactions. We focused on elucidating the solute–solvent interactions at the rate-determining step and the stereoselective step. Our theoretical finding suggests, hydroalcoholic-mediated reaction exhibits a higher conversion rate as compared to pure water and pure methanol-mediated system with the generation of most stable transition state structure. This can be attributed to the existence of strong hydrogen bonding and the formation of stable six-membered transition state structures in hydroalcoholic-mediated system. In addition to this, our research demonstrates that the choice of solvent plays a crucial role in determining the percentage of enantiomeric excess in the reaction. Theoretical finding suggest that the anti-product is preferentially formed in the presence of water and hydroalcoholic media as solvents. Pure water and hydroalcoholic solvents surprisingly showed a higher enantiomeric excess for the anti-product due to formation of strong hydrogen bonding between reaction moiety and solvents. In contrast, methanol-assisted reactions resulted in a racemic mixture, consistent with experimental observations. Results reported in the present study contribute to the broader understanding of solvent effects in organic reactions and offer valuable insights for the design of organic reactions.

摘要 溶剂的选择在醛醇反应中起着至关重要的作用,通常会影响转化率和立体选择性。在本研究中,我们研究了溶剂(水、甲醇和水醇)对脯氨酸催化的醛醇反应的影响。我们重点阐明了在速率决定步骤和立体选择步骤中溶剂与溶剂之间的相互作用。我们的理论发现表明,与纯水和纯甲醇介导的体系相比,水醇介导的反应具有更高的转化率,并能生成最稳定的过渡态结构。这可归因于水醇介导体系中存在强氢键和形成稳定的六元过渡态结构。此外,我们的研究还表明,溶剂的选择对决定反应中对映体过量的百分比起着至关重要的作用。理论研究结果表明,在水和水醇介质作为溶剂的情况下,反产物会优先形成。由于反应分子和溶剂之间形成了强氢键,纯水和水醇溶剂竟然显示出较高的对映体过量。相比之下,甲醇辅助反应产生的是外消旋混合物,这与实验观察结果一致。本研究报告的结果有助于更广泛地了解有机反应中的溶剂效应,并为有机反应的设计提供了宝贵的见解。
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引用次数: 0
Computational insights on the adsorption of glycine, methionine, tyrosine and phenylalanine on the zinc oxide nanocluster Zn12O12 关于甘氨酸、蛋氨酸、酪氨酸和苯丙氨酸在纳米氧化锌簇 Zn12O12 上吸附的计算见解
IF 1.7 4区 化学 Q3 Chemistry Pub Date : 2024-01-16 DOI: 10.1007/s00214-023-03087-5
Seyfeddine Rahali, Maamar Damous, Youghourta Belhocine, Najoua Sbei, Ridha Ben Said, Moussa Diawara, Mahamadou Seydou

The current work investigated the interaction of ZnO nanoparticles (NPs) with glycine, tyrosine, methionine and phenylalanine. (ZnO)12 cage-like cluster was modeled using the density functional theory to determine the adsorption energy, the preferred sites for adsorption of amino acids, and the electronic structure of the formed complexes. The findings suggest that pure amino acids interact with (ZnO)12 via a chemisorption process. The thermodynamic parameters computed showed that the complexation is an exothermic process and enthalpy-driven. The oxygen atoms in the carboxyl groups of the four studied amino acids are involved in the adsorption process. PHE_Zn12O12 exhibits the highest adsorption energy (− 207.50 kJ/mol) due to its interaction with the Zn12O12 nanocluster through two different adsorption sites. The electronic and sensing properties were examined by analyzing the HOMO and LUMO energies and the HOMO–LUMO energy gap (|ΔEg|). The sensitivity of Zn12O12 nanocluster toward the studied amino acids was examined by comparing the percentage variation of the gap after the adsorption, which can reach the value of 38%, suggesting the potential of Zn12O12 nanocluster as a promising sensor for the detection of amino acids. Interaction region indicator (IRI) analysis was performed for a visual understanding of the different interactions occurring between the amino acids and the Zn12O12 nanocluster. The results of this study can shed some light on the possible application of ZnO-based nanobiosensors for detecting protein tyrosine/tryptophan nitration as an early symptom of several serious chronic diseases.

目前的工作研究了氧化锌纳米粒子(NPs)与甘氨酸、酪氨酸、蛋氨酸和苯丙氨酸的相互作用。(利用密度泛函理论对(ZnO)12 笼状团簇进行了建模,以确定氨基酸的吸附能、首选吸附位点以及所形成复合物的电子结构。研究结果表明,纯氨基酸通过化学吸附过程与 (ZnO)12 发生相互作用。计算得出的热力学参数表明,络合是一个放热过程,由焓驱动。所研究的四种氨基酸的羧基中的氧原子参与了吸附过程。PHE_Zn12O12 具有最高的吸附能(- 207.50 kJ/mol),这是因为它通过两个不同的吸附位点与 Zn12O12 纳米簇相互作用。通过分析 HOMO 和 LUMO 能以及 HOMO-LUMO 能隙 (|ΔEg|),研究了电子和传感特性。通过比较吸附后能隙的百分比变化,考察了 Zn12O12 纳米团簇对所研究氨基酸的灵敏度。为了直观地了解氨基酸与 Zn12O12 纳米团簇之间发生的不同相互作用,对相互作用区域指示剂(IRI)进行了分析。这项研究的结果可以为基于氧化锌的纳米生物传感器在检测蛋白质酪氨酸/色氨酸硝化(几种严重慢性疾病的早期症状)方面的可能应用提供一些启示。
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引用次数: 0
Computational design of a molecularly imprinted polymer to cyhalothrin 高效氯氟氰菊酯分子印迹聚合物的计算设计
IF 1.7 4区 化学 Q3 Chemistry Pub Date : 2024-01-15 DOI: 10.1007/s00214-023-03085-7
Vitória S. Reis, Pollyanna P. Maia, Luciana Guimarães, Clebio S. Nascimento

The primary objective of this study was to utilize high-level density functional theory calculations to optimize the synthetic parameters for a molecularly imprinted polymer (MIP) targeting cyhalothrin, a synthetic pyrethroid insecticide. A systematic structural and energetic analysis was performed to investigate various functional monomers, solvents, and cross-linker agents in order to obtain the optimal MIP synthetic conditions. The main findings indicate that p-vinylbenzoic acid, is the optimal functional monomer, chloroform are effective solvents, and pentaerythritol triacrylate is the recommended cross-linking agent. We firmly believe that this rational design offers valuable insights to experimentalists seeking to efficiently synthesize a MIP for the selective extraction of this widely used insecticide, thereby avoiding wasted laboratory resources and achieving high extraction yields.

本研究的主要目的是利用高水平密度泛函理论计算来优化针对合成拟除虫菊酯杀虫剂氰戊菊酯的分子印迹聚合物(MIP)的合成参数。为了获得最佳的 MIP 合成条件,对各种功能单体、溶剂和交联剂进行了系统的结构和能量分析。主要研究结果表明,对乙烯基苯甲酸是最佳的功能单体,氯仿是有效的溶剂,季戊四醇三丙烯酸酯是推荐的交联剂。我们坚信,这种合理的设计为实验人员提供了宝贵的启示,使他们能够高效合成 MIP,用于选择性提取这种广泛使用的杀虫剂,从而避免浪费实验室资源,获得高提取率。
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引用次数: 0
Insight into solvent-polarity-regulated photoinduced excited state behaviors for E-HBT fluorophore: a theoretical investigation 洞察 E-HBT 荧光体受溶剂极性调节的光诱导激发态行为:一项理论研究
IF 1.7 4区 化学 Q3 Chemistry Pub Date : 2024-01-12 DOI: 10.1007/s00214-023-03086-6
Chaozheng Li, Hao Dong, Rivaille Liu

Inspired by the remarkable photochemical and photophysical properties of novel 2-(2′-hydroxyphenyl)benzothiazole (HBT) derivatives that could be potentially applied across various disciplines, in this work, effects of solvent polarity on excited state hydrogen bond effects and excited state intramolecular proton transfer (ESIPT) reaction of 5-{2-[2-(4-amino-phenyl)-2,3-dihydro-benzofuran-6-yl]-vinyl}-2-benzothiazol-2-yl-phenol (E-HBT) are focused. By comparing the structural changes and infrared (IR) vibrational spectra of the E-HBT fluorophore in polar acetonitrile, moderate polar dichloromethane and nonpolar cyclohexane solvents, combined with the preliminary detection of hydrogen bond interaction by core-valence bifurcation (CVB) index, we can conclude that the hydrogen bond could be strengthened in S1 state, which is favorable for the occurrence of ESIPT reactions. The charge recombination behavior of hydrogen bond induced by photoexcitation also further illustrates this point. Via constructing potential energy curves (PECs) based on restrictive optimization and searching transition state (TS) form, we confirm change of surrounding solvent polarity has a regulatory effect on the ESIPT behavior for E-HBT, that is, the higher the polarity of the solvent, the more favorable it is for the ESIPT reaction.

新型 2-(2′-羟基苯基)苯并噻唑(HBT)衍生物具有显著的光化学和光物理性质,可应用于多个学科,受此启发,本研究开展了以下工作、溶剂极性对 5-{2-[2-(4-氨基苯基)-2,3-二氢苯并呋喃-6-基]-乙烯基}-2-苯并噻唑-2-基-苯酚(E-HBT)的激发态氢键效应和激发态分子内质子转移(ESIPT)反应的影响。通过比较 E-HBT 荧光体在极性乙腈、中等极性二氯甲烷和非极性环己烷溶剂中的结构变化和红外振动光谱,结合核价分叉(CVB)指数对氢键相互作用的初步检测,我们可以得出结论:氢键在 S1 状态下会得到加强,有利于 ESIPT 反应的发生。光激发诱导氢键的电荷重组行为也进一步说明了这一点。通过构建基于限制性优化的势能曲线(PEC)和寻找过渡态(TS)形式,我们证实了周围溶剂极性的变化对 E-HBT 的 ESIPT 行为具有调节作用,即溶剂极性越高,越有利于 ESIPT 反应的发生。
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引用次数: 0
Adsorption and diffusion properties of tobacco composition and additive: a multiscale theoretical study 烟草成分和添加剂的吸附和扩散特性:多尺度理论研究
IF 1.7 4区 化学 Q3 Chemistry Pub Date : 2024-01-10 DOI: 10.1007/s00214-023-03084-8
Qian Xia, Jun Wang, Jian Jiang, Anfu Hu, Jian Wu, Xinbo Lu, Weiqiang Xiao, Guojun Zhou, Guilin Zhuang

Temperature, concentration and pore size constitute critical factors influencing adsorption and diffusion in tobacco. Investigating the adsorption and diffusion behavior of tobacco not only advances fundamental theory but also provides practical guidance for the tobacco industry to optimize cigarette quality and performance through adjustments in production conditions. This study reports a multiscale simulation framework exploring the adsorption and diffusion of water, propylene glycol, glycerol and nicotine under the influence of these key factors. First-principles density functional theory calculations reveal the preference of H2O to adsorb on O-top rather than H-top sites due to weak hydrogen bond interactions. Additionally, molecular dynamics simulations demonstrate that with increase in temperature, the diffusion properties of H2O and other components enhance, attributed to intensified thermal vibrations and increased kinetic energy of the adsorbent. Intriguingly, with increase in concentration, the diffusion properties of all adsorbents initially increase and then decrease, intricately linked to hydrogen bond effects on system stability and the availability of accommodation space in the porous structure of cellulose. Furthermore, as pore size enlarges, the diffusion of adsorbents significantly increases due to the expansion of free space. In summary, the objective of this study is to provide a profound theoretical understanding for the cigarette industry, thereby contributing to the improvement of cigarette quality and flavor.

温度、浓度和孔径是影响烟草吸附和扩散的关键因素。研究烟草的吸附和扩散行为不仅能推进基础理论的发展,还能为烟草行业通过调整生产条件来优化卷烟质量和性能提供实际指导。本研究报告了一个多尺度模拟框架,探讨了水、丙二醇、甘油和尼古丁在这些关键因素影响下的吸附和扩散。第一原理密度泛函理论计算显示,由于氢键相互作用较弱,H2O 更倾向于吸附在 O 顶而不是 H 顶位点上。此外,分子动力学模拟表明,随着温度的升高,H2O 和其他成分的扩散特性会增强,这归因于吸附剂的热振动增强和动能增加。耐人寻味的是,随着浓度的增加,所有吸附剂的扩散特性都会先增加后降低,这与氢键对系统稳定性的影响以及纤维素多孔结构中的容纳空间错综复杂地联系在一起。此外,随着孔径增大,吸附剂的扩散也会因自由空间的扩大而显著增加。总之,这项研究的目的是为卷烟工业提供一个深刻的理论认识,从而为提高卷烟质量和香味做出贡献。
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引用次数: 0
A theoretical method to assess cyclability of intercalation electrode materials using DFT 利用 DFT 评估插层电极材料循环性的理论方法
IF 1.7 4区 化学 Q3 Chemistry Pub Date : 2023-12-30 DOI: 10.1007/s00214-023-03083-9
Hatef Yousefi-Mashhour, Samin Hassani, Mohammad Mahdi Kalantarian, Afshin Namiranian

Density functional theory is widely used to theoretical investigation and comparison of electrode materials. In this paper, we propose novel theoretical approach to evaluate cyclability of intercalation electrode materials. Crystal structure of an intercalation electrode material have to be stable after deintercalation, which is called “structural stability”. Capability of an electrode to endure many cycles is called as “cyclability”. We suggest that changing in properties in atomic scale under intercalation/deintercalation (cycling) is responsible for low cyclability, while changing in cell parameters and unit cell properties is responsible for the primitive structural stability. Also, thermodynamic stability of the electrode polymorph after deintercalation can be another parameter of structural stability. We use layered oxides and spinel electrode materials, to verify the here proposed approach, respectively, for atomic forces and magnetic moment. As a consideration in analysis of calculated forces, LiCoO2 is estimated to have the most stable cycling in the family. According to the results, Fe atoms in LiFeO2 would experience huge changes in the force value after (de)lithiation, causing low cyclability, as observe in experiments. In term of changes in magnetic moment under (de)lithiation, our calculations show significant changes of magnetic moment for LiMn2O4, which justifies its low cyclability observed in the experimental studies.

密度泛函理论被广泛用于电极材料的理论研究和比较。本文提出了评估插层电极材料循环性的新理论方法。插层电极材料的晶体结构必须在去插层后保持稳定,这被称为 "结构稳定性"。电极经受多次循环的能力称为 "循环能力"。我们认为,在插层/脱插层(循环)过程中原子尺度的性质变化是导致低循环性的原因,而晶胞参数和单胞性质的变化则是导致原始结构稳定性的原因。此外,脱插后电极多晶体的热力学稳定性也是结构稳定性的另一个参数。我们使用层状氧化物和尖晶石电极材料来验证本文提出的原子力和磁矩计算方法。作为计算力分析的一个考虑因素,估计钴酸锂在该系列中具有最稳定的循环。根据实验结果,锂铁二氧化物中的铁原子在(脱)锂化后,力值会发生巨大变化,导致循环性降低。就(脱)石化作用下的磁矩变化而言,我们的计算显示锰酸锂的磁矩发生了显著变化,这说明实验研究中观察到的锰酸锂循环性较低是有道理的。
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引用次数: 0
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