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Food Source Identification of Macrozoobenthos in the Mangrove Ecosystem of Lubuk Damar, Aceh Tamiang, Indonesia: A Stable Isotope Approach. 印度尼西亚亚齐 Tamiang Lubuk Damar 红树林生态系统中大型底栖生物的食物来源鉴定:稳定同位素方法。
IF 1.1 Q3 BIOLOGY Pub Date : 2024-07-01 Epub Date: 2024-07-31 DOI: 10.21315/tlsr2024.35.2.2
Ananingtyas S Darmarini, Yusli Wardiatno, Tri Prartono, Kadarwan Soewardi, Irwan Iskandar, Musti'atin, Sonja Kleinertz

Changes in the existence of mangroves will have an impact on changes in food webs in their respective areas. The purpose of this study was to determine the food source of the macrozoobenthos community within the Lubuk Damar mangrove ecosystem. Stable isotopes, carbon and nitrogen were used to describe the food sources for macrozoobenthos in the mangrove ecosystem of the Lubuk Damar Ecosystem, Aceh Tamiang, Indonesia. The stable isotope analysis of 13C and 15N was carried out using Isotopic-Ratio Mass Spectrometry. Potential food sources at the study site based on stable isotope ratios ranged between -29.08‰ to -20.66‰ (δ13C) and 4.07‰ to 5.63‰ (δ15N); macrozoobenthos -25.00‰ to -14.76‰ (δ13C) and 5.59‰ to 7.73‰ (δ15N). The potential food sources tested at the study site consisted of seven sources, but not all food sources in the ecosystem were consumed by the invertebrate community. This study shows that mangrove leaf litter serves as a food source for some invertebrates, such as the bivalves, gastropods, polychaetes, sipunculans, brachiopods and crustaceans. The results of this study evidence that the examined mangrove ecosystem has a function as a provider of food sources in the surrounding waters, therefore its existence is very important supporting diversity of coastal waters.

红树林存在的变化将对其各自区域食物网的变化产生影响。本研究的目的是确定 Lubuk Damar 红树林生态系统中大型底栖生物群落的食物来源。研究采用稳定同位素、碳和氮来描述印度尼西亚亚齐塔米昂省卢布克达玛红树林生态系统中大型底栖生物的食物来源。利用同位素比质谱法对 13C 和 15N 进行了稳定同位素分析。根据稳定同位素比值,研究地点的潜在食物来源介于-29.08‰至-20.66‰(δ13C)和4.07‰至5.63‰(δ15N)之间;大型底栖生物介于-25.00‰至-14.76‰(δ13C)和5.59‰至7.73‰(δ15N)之间。在研究地点测试的潜在食物来源包括 7 种,但并非生态系统中的所有食物来源都被无脊椎动物群落食用。这项研究表明,红树林落叶是一些无脊椎动物的食物来源,如双壳类动物、腹足类动物、多毛类动物、吸虫类动物、腕足动物和甲壳类动物。这项研究的结果证明,所考察的红树林生态系统具有为周围水域提供食物来源的功能,因此它的存在对支持沿岸水域的多样性非常重要。
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引用次数: 0
High Carriage of tetA, sul1, sul2 and bla TEM Resistance Genes among the Multidrug-resistant Uropathogenic Escherichia coli (UPEC) Strains from Malaysian Patients. 马来西亚患者的耐多药尿路致病性大肠杆菌(UPEC)菌株中携带大量 tetA、sul1、sul2 和 bla TEM 抗性基因。
IF 1.1 Q3 BIOLOGY Pub Date : 2024-07-01 Epub Date: 2024-07-31 DOI: 10.21315/tlsr2024.35.2.10
Jia-Jin Chin, Hui-Mei Lee, Shuet-Yi Lee, Yin-Ying Lee, Choy-Hoong Chew

The rapid emergence of multidrug-resistant (MDR) uropathogenic Escherichia coli (UPEC) strains pose a critical challenge in urinary tract infection (UTI) treatments. However, little work elucidated the resistance mechanisms of the MDR UPEC clinical strains in Malaysia. Therefore, this study aimed to determine the antimicrobial susceptibility profiles and the prevalence of antimicrobial resistance genes among the UPEC strains. Polymerase chain reactions were conducted to detect the presence of 6 antimicrobial resistance genes among 60 UPEC strains. Meanwhile, the antimicrobial resistance profiles against 9 antimicrobials were examined through the Kirby-Bauer disk diffusion method. In this study, the MDR isolates accounted for 40.0% (24/60), with the highest prevalence of resistance towards ampicillin (43/60; 71.7%), followed by tetracycline (31/60; 51.7%), nalidixic acid (30/60; 50.0%), co-trimoxazole (20/60, 33.3%), ciprofloxacin (19/60, 31.7%), levofloxacin (16/60, 21.6%) and chloramphenicol (10/60, 16.7%). In contrast, low resistance rates were observed among minocycline (1/60; 1.7%) and imipenem (0/60; 0.0%). bla TEM was the most prevalent gene (36/60; 60.0%), followed by tetA (27/60; 45.0%), sul2 (25/60; 41.7%), sul1 (13/60; 21.7%) and tetB (8/60; 13.3%). Surprisingly, bla SHV was not detected among the UPEC isolates. The MDR, ampicillin and tetracycline-resistant isolates were significantly associated with a higher prevalence of tetA, sul1, sul2 and bla TEM. In contrast, tetB displayed no significant relationship with any of the antimicrobials tested. The patient's age and gender were not the risk factors for the carriage of the resistance genes. Our findings identified the common resistance genes carried by the antimicrobial resistant UPEC isolates and provide valuable insights into developing the best antibiotic prescription regime to treat UTIs in our local scene.

耐多药(MDR)尿路致病性大肠杆菌(UPEC)菌株的迅速出现,给尿路感染(UTI)治疗带来了严峻挑战。然而,很少有研究阐明马来西亚 MDR UPEC 临床菌株的耐药机制。因此,本研究旨在确定UPEC菌株的抗菌药敏感性概况和抗菌药耐药基因的流行率。研究人员通过聚合酶链反应检测了60株UPEC菌株中存在的6种抗菌药耐药性基因。同时,通过柯比鲍尔磁盘扩散法检测了对 9 种抗菌药物的耐药性。在这项研究中,耐药菌株占 40.0%(24/60),对氨苄西林的耐药率最高(43/60;71.7%),其次是四环素(31/60;51.其次是四环素(31/60;51.7%)、萘啶酸(30/60;50.0%)、共三唑(20/60,33.3%)、环丙沙星(19/60,31.7%)、左氧氟沙星(16/60,21.6%)和氯霉素(10/60,16.7%)。bla TEM 是最常见的基因(36/60;60.0%),其次是 tetA(27/60;45.0%)、sul2(25/60;41.7%)、sul1(13/60;21.7%)和 tetB(8/60;13.3%)。令人惊讶的是,在 UPEC 分离物中没有检测到 bla SHV。耐 MDR、氨苄西林和四环素的分离株与较高的 tetA、sul1、sul2 和 bla TEM 感染率有明显关联。相比之下,tetB 与所测试的任何抗菌药物均无明显关系。患者的年龄和性别并不是耐药基因携带的风险因素。我们的研究结果确定了耐抗菌素的 UPEC 分离物所携带的常见耐药基因,为制定治疗本地尿毒症的最佳抗生素处方制度提供了宝贵的见解。
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引用次数: 0
The Performances of Adlay (Coix lacryma-jobi L.) As Component of Agroforestry on Teak (Tectona grandis L.f.) Plantation. 作为柚木(Tectona grandis L.f.)种植园农林业组成部分的阿德雷(Coix lacryma-jobi L.)的表现。
IF 1.1 Q3 BIOLOGY Pub Date : 2024-07-01 Epub Date: 2024-07-31 DOI: 10.21315/tlsr2024.35.2.5
Titi Juhaeti, Nuril Hidayati, Ninik Setyowati, Albert Husen Wawo, Wahyu Widiyono

Adlay is an edible high nutritious minor cereal. The research aimed to study the adlay performance when cultivated intercropped on young teak (Tectona grandis L.f.) plantation. The treatments were consisted of two factors that were arranged by factorial (3 × 3) in randomised completed block design with four replicates. The first factor was three fertilisation dosages of NPK (16-16-16), as 0 g/hole (F0), 2 g/hole (F2) and 4 g/hole (F4). The second factors were three planting space as 2 m × 2 m (PS2), 3 m × 3 m (PS3) and 4 m × 4 m (PS4). The parameter observed were vegetative growth which was consisted of plant height, the number of leaves, tillers and sub tillers, leaf chlorophyll content, grain production and biomass weight. The results revealed that fertilisation treatment were significantly affected the growth and production of adlay. On 12 weeks after planting, the F4 treatment produced the tallest plant, and the highest leaf number. The highest grain number/plant was achieved on the F2 treatment that was significantly different compared with the control (F0). The shading intensity due to the teak coverage significantly affected adlay growth and production. The PS4 treatment produced the highest number of leaves, tillers and grains. The combination of F2 and PS4 treatments resulted in the best growth and production. The PS2 treatment which has lower light intercepted by plants due to lower incident light intensity, resulting in a significant reduction in plant growth and production. It is suggested that adlay offers potency as a component of agro-forestry on the teak plantations.

糯稻是一种可食用的高营养小谷物。这项研究的目的是研究在幼柚木(Tectona grandis L.f.)种植园间作种植 Adlay 时的表现。处理由两个因素组成,采用因子(3 × 3)随机整群设计,四个重复。第一个因子是三种氮磷钾(16-16-16)施肥量,分别为 0 克/穴(F0)、2 克/穴(F2)和 4 克/穴(F4)。第二个因素是三种种植空间,分别为 2 米×2 米(PS2)、3 米×3 米(PS3)和 4 米×4 米(PS4)。观察参数为植株生长,包括株高、叶片数、分蘖和亚分蘖数、叶片叶绿素含量、谷物产量和生物量重量。结果表明,施肥处理对簕杜鹃的生长和产量有显著影响。播种 12 周后,F4 处理的植株最高,叶片数也最多。与对照(F0)相比,F2 处理的粒数/株最高,差异显著。柚木覆盖造成的遮荫强度对簕杜鹃的生长和产量有明显影响。PS4 处理的叶片数、分蘖数和谷粒数最高。F2 和 PS4 处理组合的生长和产量最好。PS2 处理由于入射光强度较低,植物截获的光量较少,导致植物生长和产量显著下降。这表明,柚木作为柚木种植园农林业的一个组成部分具有潜力。
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引用次数: 0
Bioassay-Guided Fractionation of Acetone and Methanol Extracts of Quercus infectoria Galls with Antimalarial Properties. 生物测定指导下丙酮和甲醇提取物的抗疟特性
IF 1.1 Q3 BIOLOGY Pub Date : 2024-07-01 Epub Date: 2024-07-31 DOI: 10.21315/tlsr2024.35.2.8
Nurul Hammizah Hamidon, Anjana Chamilka Thuduhenage Dona, Nik Nor Imam Nik Mat Zin, Nurul Izza Nordin, Shaida Fariza Sulaiman, Nurhidanatasha Abu-Bakar

The antimalarial properties of crude extracts from Quercus infectoria galls were investigated through bioassay-guided fractionation. Acetone (QIA) and methanol (QIM) crude extracts have been reported to have promising antimalarial activity against Plasmodium falciparum (3D7 strain). These extracts were subjected to fractionation using automated preparative high-performance liquid chromatography (prep-HPLC) to identify the most active fractions. Nine fractions were isolated from each extract, of which the fractions QIA11 and QIM16 showed antimalarial activity, with IC50 values of 17.65 ± 1.82 μg/mL and 24.21 ± 1.88 μg/mL, respectively. In comparison, the standard antimalarial drug artemisinin has an IC50 value of 0.004 ± 0.001 μg/mL). Through high-resolution liquid chromatography coupled with mass spectrometry (HR-LCMS) analysis of the fractions, four known compounds were successfully identified: gallic acid, ellagic acid, 1,3,6-tris-o-(3,4,5-trihydroxybenzoyl)-beta-d-glucose and 1-O,6-O-digalloyl-beta-D-glucose.

通过生物测定指导下的分馏,研究了柞树虫瘿粗提取物的抗疟特性。据报道,丙酮(QIA)和甲醇(QIM)粗提取物对恶性疟原虫(3D7 株)具有良好的抗疟活性。这些提取物通过自动制备型高效液相色谱法(prep-HPLC)进行分馏,以确定最具活性的馏分。从每种提取物中分离出 9 个馏分,其中 QIA11 和 QIM16 显示出抗疟活性,IC50 值分别为 17.65 ± 1.82 μg/mL 和 24.21 ± 1.88 μg/mL。相比之下,标准抗疟药青蒿素的 IC50 值为 0.004 ± 0.001 μg/mL)。通过对馏分进行高分辨液相色谱-质谱(HR-LCMS)分析,成功鉴定出四种已知化合物:没食子酸、鞣花酸、1,3,6-三-邻(3,4,5-三羟基苯甲酰基)-beta-D-葡萄糖和 1-O,6-邻二甲酰-beta-D-葡萄糖。
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引用次数: 0
Potential Utilisation of Theobroma cacao Pod Husk Extract: Protective Capability Evaluation Against Pollution Models and Formulation into Niosomes. 可可豆荚果壳提取物的潜在用途:针对污染模型的保护能力评估及配制成 Niosomes。
IF 1.1 Q3 BIOLOGY Pub Date : 2024-07-01 Epub Date: 2024-07-31 DOI: 10.21315/tlsr2024.35.2.6
Erika Chriscensia, Joshua Nathanael, Urip Perwitasari, Agus Budiawan Naro Putra, Shakila Angjaya Adiyanto, Pietradewi Hartrianti

Theobroma cacao L. beans have long been used for food and medicinal purposes. However, up to 52%-76% of Theobroma cacao L. fruit comprises its husk, which are regarded as waste and oftentimes thrown away. In fact, cocoa pod husks actually possess a high antioxidant capacity. Antioxidants can be used to fight free radicals that are produced by environmental pollution. In order to simulate the effects of pollution, H2O2 and cigarette smoke extract models were used respectively. However, the antioxidant properties are limited on the skin due to poor penetration. Hence, in order to increase the topical penetration, cocoa pod husk extract (CPHE) was also formulated into niosomes thereafter. CPHE was characterised using total phenolic content, total flavonoid content and three antioxidant assays. After that, cytotoxicity and cytoprotective assay were conducted on HaCaT cells, which represent the skin epidermis. CPHE was then formulated into niosomes subjected to stability and penetration studies for three months. CPHE was shown to contain 164.26 ± 1.067 mg GAE/g extract in total phenolic content and 10.72 ± 0.32 mg QCE/g extract in total flavonoid content. In addition, our results showed that CPHE possesses similar antioxidant capacity through 2,2-diphenyl-1-picrylhydrazyl (DPPH) assay, around eight-fold less through ABTS assay and approximately twelve-fold less through Ferric reducing power (FRAP) assay. The extract also showed comparable cytoprotective properties to that of standard (ascorbic acid). The niosome formulation was also able to increase the penetration compared to unencapsulated extract, as well as possess a good stability profile. This showed that CPHE, in fact, could be repurposed for other uses other than being thrown away as waste.

可可豆长期以来一直被用于食用和药用目的。然而,可可豆果实高达 52%-76% 的果壳被视为废物,经常被丢弃。事实上,可可果荚壳具有很高的抗氧化能力。抗氧化剂可用于对抗环境污染产生的自由基。为了模拟污染的影响,分别使用了 H2O2 和香烟烟雾提取物模型。然而,由于渗透性差,抗氧化剂在皮肤上的作用有限。因此,为了提高局部渗透性,可可荚果皮提取物(CPHE)也被配制成niosomes。使用总酚含量、总黄酮含量和三种抗氧化测定法对 CPHE 进行了表征。然后,在代表皮肤表皮的 HaCaT 细胞上进行了细胞毒性和细胞保护试验。然后,CPHE 被配制成niosomes,并进行了为期三个月的稳定性和渗透性研究。结果表明,CPHE 的总酚含量为 164.26 ± 1.067 mg GAE/g,总黄酮含量为 10.72 ± 0.32 mg QCE/g。此外,我们的研究结果表明,通过 2,2-二苯基-1-苦基肼(DPPH)检测,CPHE 具有相似的抗氧化能力;通过 ABTS 检测,CPHE 的抗氧化能力约为 ABTS 的 8 倍;通过铁还原力(FRAP)检测,CPHE 的抗氧化能力约为铁还原力的 12 倍。提取物还显示出与标准(抗坏血酸)相当的细胞保护特性。与未包封的提取物相比,niosome 配方还能提高渗透性,并具有良好的稳定性。这表明,CPHE 除了作为废物扔掉之外,实际上还可以重新用于其他用途。
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引用次数: 0
Length-Weight Relationship and Condition Factor of Fishes in Two Major Rivers, the Chao Phraya and the Bang Pakong, in Thailand 泰国湄南河和邦帕孔河两条主要河流中鱼类的长重关系和状态因子
IF 1.4 Q2 Agricultural and Biological Sciences Pub Date : 2024-04-05 DOI: 10.21315/tlsr2024.35.1.14
Chayajit Deekrachang, Chaiwut Grudpun, Apinun Suvarnaraksha, Pisit Phomikong, Tuantong Jutagate
Length-weight relationship (LWR) was used as a tool to assess the status of fish stocks, through condition factor, in major rivers in Thailand. Fifty-one (51) fish species from each river, i.e., The examined for LWR using eleven years of monitoring data (2010–2020) for Bang Pakong and 14 years of monitoring data (2007–2020) for Chao Phraya, which comprised 57,871 samples. The parameters for LWR and condition factor were examined by species and by body shape, i.e., ovate, oblong, elongate or eel-like. The coefficient of determination (r2) of all log-transformed LWRs was greater than 0.90. Parameter b of LWR ranged between 2.06 and 3.46 (median = 3.00) for fishes from the Chao Phraya River and between 1.72 and 3.68 (median = 2.76) for fishes from the Bang Pakong River. The overall condition factor, which implies the well-being that indicates the health or fattening of the fishes in a stock, ranged between 0.93 and 1.09. There was no significant difference in the overall well-being (P = 0.279) between the two rivers. Fishes with oblong and elongate shapes in the Chao Phraya River showed higher median values of parameter b of LWR than those from the Bang Pakong River. However, there was no significant difference (P > 0.05) in the well-being of the fish stocks between the two rivers when pooled by shape. The findings are fundamental information for fish stock assessment in the two rivers, which greatly support the small-scale fisheries in Thailand.
长度-重量关系(LWR)被用作通过条件因子评估泰国主要河流中鱼类种群状况的工具。利用 Bang Pakong 的 11 年监测数据(2010-2020 年)和 Chao Phraya 的 14 年监测数据(2007-2020 年),对每条河流的 51 种鱼类(即 57,871 个样本)进行了长重关系研究。按物种和体形(即卵形、长圆形、细长形或鳗鲡形)对低纬度和状态因子参数进行了研究。所有经对数变换的长宽比的判定系数(r2)均大于 0.90。湄南河鱼类的低纬度系数参数 b 介于 2.06 和 3.46 之间(中位数 = 3.00),邦帕公河鱼类的低纬度系数参数 b 介于 1.72 和 3.68 之间(中位数 = 2.76)。总体状况因子表示鱼群的健康或育肥状况,介于 0.93 和 1.09 之间。两条河流的总体健康状况没有明显差异(P = 0.279)。湄南河中长圆形和细长形鱼类的长寿率参数 b 的中值高于 Bang Pakong 河中的鱼类。然而,如果按鱼体形状分类,两河鱼类种群的健康状况没有明显差异(P > 0.05)。这些发现为两条河流的鱼类种群评估提供了基本信息,为泰国的小型渔业提供了极大的支持。
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引用次数: 0
Leaf Architecture and Genome Size Variation of Durio zibethinus L. from Jelebu, Negeri Sembilan, Malaysia 马来西亚森美兰州 Jelebu 的 Durio zibethinus L. 的叶片结构和基因组大小变异
IF 1.4 Q2 Agricultural and Biological Sciences Pub Date : 2024-04-05 DOI: 10.21315/tlsr2024.35.1.10
K. Shamin-Shazwan, R. Shahari, Che Nurul Aini, Che Amri, Razik Midin, Mohd Razik Midin
Durio zibethinus L. is known as the “king of fruit” in Malaysia. Meanwhile, Jelebu, Negeri Sembilan has always become the top choice district to visit for durian lover for its Durian Kampung Jelebu, which possessed good quality on par with top D. zibethinus clones such as D197 Musang King and D24. However, there is still lacking in taxonomic data of D. zibethinus especially from Jelebu. This study aimed to analyse the leaf architecture and genome size variations of selected D. zibethinus accessions from Jelebu. Five D. zibethinus accessions from Jelebu were examined. Thirty-seven parameters of gross leaf morphological characteristics and leaf venation pattern were observed and recorded for identification and classification of D. zibethinus accessions from Jelebu. Seven parameters have been recorded which are petiole length, petiole features, leaf size, leaf shape, leaf base shape, lower leaf surface colour and areolation could be used in differentiating between accessions. Results of this study showed the intraspecific variations existed among D. zibethinus accessions from Jelebu with a genome size varying between 1.7433 pg and 1.800 pg. In conclusion, data on leaf architecture and genome size variations from D. zibethinus accessions are beneficial for early plant identification and classification.
榴莲(Durio zibethinus L.)被誉为马来西亚的 "水果之王"。与此同时,森美兰州的热勒布(Jelebu)一直是榴莲爱好者的首选地区,因为这里的榴莲甘榜热勒布(Kampung Jelebu)拥有与顶级榴莲克隆品种(如 D197 Musang King 和 D24)相媲美的优良品质。然而,关于榴莲的分类学数据仍然缺乏,尤其是来自热勒布的数据。本研究旨在分析杰莱布所选 D. zibethinus 接种的叶片结构和基因组大小变化。研究考察了来自热勒布的 5 个 D. zibethinus 品种。观察并记录了叶片形态特征和叶脉图案的 37 个参数,以便对热勒布的 D. zibethinus 插种进行鉴定和分类。所记录的叶柄长度、叶柄特征、叶片大小、叶片形状、叶基部形状、下部叶片表面颜色和隔离度等七个参数可用于区分不同品种。研究结果表明,杰莱布的 D. zibethinus 种间存在种内差异,基因组大小在 1.7433 pg 和 1.800 pg 之间。总之,D.zibethinus 入选品种的叶片结构和基因组大小变异数据有利于植物的早期鉴定和分类。
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引用次数: 0
Genetic Diversity of White-spotted Rabbitfish (Siganus canaliculatus) on Different Seagrass Habitats in Inner Ambon Bay, Indonesia Based on Mitochondrial CO1 Sequences 基于线粒体 CO1 序列的印度尼西亚内安汶湾不同海草生境中白斑兔鱼(Siganus canaliculatus)的遗传多样性
IF 1.4 Q2 Agricultural and Biological Sciences Pub Date : 2024-04-05 DOI: 10.21315/tlsr2024.35.1.15
H. Latuconsina, N. A. Butet, Ridwan Affandi, M. Kamal, Syamsul Bachry, A. A. Hakim
This study aims to analyse the genetic diversity of Siganus canaliculatus in the Inner Ambon Bay (IAB) waters. DNA of S. canaliculatus specimens collected from IAB was extracted from tissues using a Tissue Genomic DNA Mini Kit, and partial CO1 genes were amplified using pair of universal primers. Genetic distances were determined by Kimura 2-parameter, and phylogenetic trees were constructed using the neighbour-joining method in MEGA 10.2.2 software. Arlequin software was used to analyse Fixation Index (Fst) and Analysis of Molecular Variance (AMOVA). There are three SNPs of S. canaliculatus from IAB that distinguish GenBank sequence data from S. canaliculatus. In Tanjung Tiram population group, contained three specific 677 (A), 679 (G), 703 (T) sites and two 693 (G), 714 (A) sites for the Nania population. Haplotype and nucleotide diversity of each population range from 0.000 to 1,000 and 0.000 to 0.004. Intra- and inter-population genetic differentiation were 21.19% dan 78.81%, respectively. Intra- and inter-population genetic distances were in range of 0.40–1.13 and 0.00–0.37, respectively. The pattern and direction of tidal currents as a link or barrier to spatial distribution and connectivity of S. canaliculatus larvae between seagrass habitats, as well as the presence of different anthropogenic pressures in each seagrass habitat, are thought to influence the genetic characteristics (genetic diversity, genetic variation, genetic differentiation and genetic distance) of S. canaliculatus populations in IAB waters. The results of this study provide information about the urgency of habitat-based fisheries management to support sustainable utilisation.
本研究旨在分析内安汶湾(IAB)水域中Siganus canaliculatus的遗传多样性。使用组织基因组 DNA Mini 试剂盒从内安汶湾采集的 S. canaliculatus 标本组织中提取 DNA,并使用一对通用引物扩增 CO1 部分基因。用 Kimura 2 参数确定遗传距离,并在 MEGA 10.2.2 软件中用邻接法构建系统发生树。Arlequin 软件用于分析固定指数(Fst)和分子变异分析(AMOVA)。来自 IAB 的 S. canaliculatus 有三个 SNPs 与 GenBank 序列数据中的 S. canaliculatus 有所区别。在 Tanjung Tiram 种群组中,包含三个特定的 677 (A)、679 (G)、703 (T) 位点,在 Nania 种群组中,包含两个 693 (G)、714 (A) 位点。每个种群的单倍型和核苷酸多样性分别为 0.000 至 1,000 和 0.000 至 0.004。种群内和种群间的遗传分化率分别为 21.19% 和 78.81%。种群内和种群间的遗传距离分别为 0.40-1.13 和 0.00-0.37。潮汐流的模式和方向是 S. canaliculatus 幼虫在不同海草生境间空间分布和连接的纽带或障碍,同时各海草生境存在不同的人为压力,这些因素被认为会影响 IAB 水域 S. canaliculatus 种群的遗传特征(遗传多样性、遗传变异、遗传分化和遗传距离)。这项研究的结果提供了有关基于生境的渔业管理的紧迫性的信息,以支持可持续利用。
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引用次数: 0
Species Identification of Rehabilitated Critically Endangered Orangutans Through DNA Forensic: Implication for Conservation 通过 DNA 鉴证鉴定康复的极度濒危猩猩的物种:对保护工作的启示
IF 1.4 Q2 Agricultural and Biological Sciences Pub Date : 2024-04-05 DOI: 10.21315/tlsr2024.35.1.7
Christy Lavenia, Dwi Sendi, Priyono, D. S. Yudha, Tuty Arisuryanti
Rehabilitating and releasing orangutans back into the wild is one of the conservation strategies being pursued to conserve orangutans. However, the species determination between Sumatran, Tapanuli, and Bornean orangutans is essential for reintroduction to avoid outbreeding depression, which could lead to DNA hybridisation and increase the probability of recessive characters. Here, we reported on an investigation of three orangutans in which DNA forensic techniques were used to identify the species before release and reintroduction to their habitat. By applying DNA forensic, the orangutan was successfully confirmed with high probabilities (100%) by identifying two orangutan species, Pongo abelii and Pongo pygmaeus wurmbii. Based on ambiguous morphology, we found the possibility of orangutan species being misidentified in rehabilitation. This case report demonstrates the importance of molecular diagnostics to identify the orangutan species. We also provide workflow recommendations from genetic aspect for rehabilitated orangutans. These recommendations will enable decision-makers to consider genetics when assessing future management decisions, which will help ensure that the orangutan species is effectively conserved.
将猩猩康复并放归野外是保护猩猩的策略之一。然而,苏门答腊猩猩、塔帕努利猩猩和婆罗洲猩猩之间的物种判定对于重新引入猩猩是至关重要的,以避免外交抑郁,外交抑郁可能导致DNA杂交并增加隐性特征的概率。在此,我们报告了对三只红毛猩猩的调查,在放归和重新引入其栖息地之前,我们利用DNA鉴证技术对物种进行了鉴定。通过DNA鉴证,我们成功地以高概率(100%)确认了两只红毛猩猩--阿贝尔红毛猩猩(Pongo abelii)和侏儒红毛猩猩(Pongo pygmaeus wurmbii)。基于形态上的模糊性,我们发现在康复过程中红毛猩猩的物种有可能被误认。本病例报告证明了分子诊断在鉴定红毛猩猩物种方面的重要性。我们还从基因方面为康复猩猩提供了工作流程建议。这些建议将使决策者在评估未来的管理决策时考虑遗传学因素,这将有助于确保猩猩物种得到有效保护。
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引用次数: 0
Moulting Performances Evaluation of Female Orange Mud Crab, Scylla olivacea (Herbst, 1796) In-Captivity: Effects of Water Salinity and Limb Autotomy 雌性橙色泥蟹(Scylla olivacea (Herbst, 1796))蜕皮性能评估:水盐度和肢体自切的影响
IF 1.4 Q2 Agricultural and Biological Sciences Pub Date : 2024-04-05 DOI: 10.21315/tlsr2024.35.1.11
Amin-Safwan Adnan, Lawrencia Casey Gamburud, Izzah S Mohd Affendi, Mardhiyyah Mohd Pauzi, H. Mahsol, T. Muhammad, H. Manan, Muhammad Naimullah, Che-Zulkifli, Che Ismail, Muhd-Farouk Harman, M. Syafaat, Nadirah Musa, Hongyu Ma, M. Ikhwanuddin, Izzah-Syafiah Mohd
Female Scylla olivacea has become more popular in Malaysia as emerging species mainly for soft-shell crabs and crab fattening (to increase weight, size and ovary maturation so that they can be sold at a higher price). To harvest crabs in soft-shell conditions and fattening, both conditions depend mostly on moulting events. To accelerate the moulting process, the manipulation of water parameter (salinity) and autotomy of the limb is commonly used. In this study, the evaluation of the moulting performances of full limb autotomy (the removal of all the appendages except for the swimming legs) and non-ablated (control) using immature S. olivacea cultured in three different salinity treatments (10 ppt, 20 ppt and 30 ppt) were performed. Results indicate there were significant differences between mud crab’s culture duration, BW increments, growth performances and feeding efficiency with salinity. However, CW increments and survival indicate no significant effect with salinity. Meanwhile, limb autotomy proved to affect the culture duration, BW increments, survival and feeding efficiency of S. olivacea. The study concludes that both salinity and limb autotomy play significant roles in moulting performances of S. olivacea, with 20 ppt being the best salinity to stimulate S. olivacea moulting and development compared with the other two treatments (10 ppt and 30 ppt). Limb autotomy also indicates promising results as this technique proved to accelerate the moulting duration of S. olivacea with a 100% moulting percentage within 30 days. Therefore, the outcome would certainly benefit in the aquaculture production of this species of commercial importance mainly on soft-shell crabs production and also emerge as crabs fattening technique.
在马来西亚,雌蟹作为新兴品种越来越受欢迎,主要用于软壳蟹和育肥蟹(增加重量、体型和卵巢成熟度,以便以更高的价格出售)。软壳蟹和育肥蟹的收获主要取决于蜕壳过程。为加速蜕壳过程,通常会使用水参数(盐度)调节和肢体自动切除术。本研究利用在三种不同盐度处理(10 ppt、20 ppt 和 30 ppt)中养殖的未成熟橄榄鲷,对全肢自体切除(除游泳腿外切除所有附肢)和非自体切除(对照组)的蜕皮性能进行了评估。结果表明,泥蟹的养殖时间、体重增加、生长表现和摄食效率随盐度的变化存在显著差异。然而,CW 增量和存活率则表明盐度对其无显著影响。同时,肢体自切被证明会影响 S. olivacea 的养殖时间、体重增加、存活率和摄食效率。研究得出结论,盐度和肢体自切对橄榄石斑鱼的蜕皮性能有重要影响,与其他两种处理(10 ppt 和 30 ppt)相比,20 ppt 是刺激橄榄石斑鱼蜕皮和发育的最佳盐度。肢体自体切除术也显示出良好的效果,因为这种技术被证明能加快橄榄石斑鱼的蜕皮时间,30 天内蜕皮率达到 100%。因此,该结果肯定会有益于该物种的水产养殖生产,其商业价值主要体现在软壳蟹生产上,同时也可作为螃蟹育肥技术。
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引用次数: 1
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Tropical life sciences research
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