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Molecular basis of ampicillin resistance: combinatorial mechanisms and future strategies. 氨苄西林耐药的分子基础:组合机制和未来策略。
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-02-09 DOI: 10.1007/s11274-026-04826-z
Osman Türkyılmaz, Cihan Darcan
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引用次数: 0
In-depth transcriptomic and ChIP-seq analyses on IrrB regulation of iron homeostasis during initial life phase of Magnetospirillum gryphiswaldense. irb调控gryphiswaldense磁螺旋藻生命初期铁稳态的转录组学和ChIP-seq深入分析。
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-02-09 DOI: 10.1007/s11274-026-04829-w
Qing Wang, Jinli Hou, Mei Liu, Qingqing Li, Xianyu Li
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引用次数: 0
Targeted gene expression and associated metabolomic insights into Bacillus subtilis LBS5-mediated suppression of Candidatus liberibacter asiaticus in acid lime (Citrus aurantiifolia (christm.) swingle). 酸性石灰(Citrus aurantiifolia (christm.) swingle)中枯草芽孢杆菌lbs5介导的asiaticcandidatus liberibacter抑制的靶向基因表达和相关代谢组学研究
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-02-07 DOI: 10.1007/s11274-025-04752-6
Ramesh Kumar Rajamahendran, Manonmani Karunakaran, Vellaikumar Sampathrajan, Harish Sankarasubramanian, Yesuraja Iruthayarajan, Medari Sagarika, Sariga Rajmohan, Boopathi Natesan, Anandham Rangasamy, Johnson Iruthayasamy

Citrus Greening Disease (CGD), caused by Candidatus Liberibacter asiaticus (CLas), severely impairs citrus growth and productivity. Among five Bacillus isolates from acid lime leaves, Bacillus subtilis LBS5 exhibited superior plant growth-promoting traits, including a glucanolytic index of 5.85, siderophore production of 9.85 µmol/ml, IAA synthesis of 28.67 µg/ml, and phosphate solubilization of 249.34 µg/ml. LBS5 inhibited the surrogates, Xanthomonas citri and Agrobacterium tumefaciens with inhibition zones of 1.15 cm and 1.06 cm, respectively, and significantly reduced CLas titres from 6.33 ± 0.04 × 10⁸ to 9.15 ± 0.05 × 10³ copies within five days, comparable to tetracycline ((2.75 ± 0.91) × 10⁴). Gene expression analysis revealed marked upregulation of defense-related genes, PAL (5.87-17.05-fold) and PR2 (3.87-16.05-fold), indicating activation of phenylpropanoid and glucanase-mediated defense pathways. Integrated metabolomic and pathway analyses, including PLS-DA, demonstrated coordinated upregulation of PAL (2.08 log₂FC) and PR2 (2.65 log₂FC), accumulation of phenylpropanoid metabolites such as quinic acid (6.17 log₂FC), coumaric acid (2.62 log₂FC), and phenylalanine (1.36 log₂FC), and modulation of carbohydrate and antioxidant metabolism. FTIR and ¹H NMR analyses confirmed reduced lipid oxidation and lignin deposition, along with enhanced defense-related metabolites. Collectively, LBS5 effectively suppresses CLas, activates key defense pathways, and enhances metabolite-mediated resistance, highlighting its potential as a biocontrol and plant growth-promoting agent for sustainable management of CGD.

柑橘绿色病(CGD)是由亚洲解放候选菌(Candidatus Liberibacter asiaticus, CLas)引起的柑橘绿色病,严重影响柑橘的生长和产量。从酸石灰叶片中分离得到的5株芽孢杆菌中,枯草芽孢杆菌LBS5表现出较好的植物促生长特性,其葡聚糖分解指数为5.85,产铁素9.85µmol/ml, IAA合成28.67µg/ml,磷酸盐增溶249.34µg/ml。LBS5对柑橘黄单胞菌和农杆菌的抑制区分别为1.15 cm和1.06 cm,并在5天内将CLas滴度从6.33±0.04 × 10⁸显著降低至9.15±0.05 × 10³拷贝,与四环素((2.75±0.91)× 10⁴)相当。基因表达分析显示,防御相关基因PAL(5.87-17.05倍)和PR2(3.87-16.05倍)显著上调,表明苯丙素和葡聚糖酶介导的防御途径被激活。包括PLS-DA在内的综合代谢组学和途径分析表明,PAL (2.08 log 2 FC)和PR2 (2.65 log 2 FC)的协同上调,苯丙酸(6.17 log 2 FC)、香豆酸(2.62 log 2 FC)和苯丙氨酸(1.36 log 2 FC)等苯丙酸代谢物的积累,以及碳水化合物和抗氧化代谢的调节。FTIR和1h NMR分析证实了脂质氧化和木质素沉积的减少,以及防御相关代谢产物的增强。综上所述,LBS5有效抑制CLas,激活关键防御通路,增强代谢物介导的抗性,凸显了其作为生物防治和植物生长促进剂对CGD可持续管理的潜力。
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引用次数: 0
Functional genomics and Pan-genome mining of endophytic Streptomyces rochei BBE1 reveal plant growth-promoting traits and biocontrol potential against banana Fusarium wilt. 内生链霉菌rochei BBE1的功能基因组学和泛基因组挖掘揭示了香蕉枯萎病的植物促生特性和生物防治潜力。
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-02-07 DOI: 10.1007/s11274-025-04779-9
Rajkumar Sudharsan, Arutselvan Vanitha, Chinnan Kannan, Sivaji Jeevanantham, Nelaturi Hima Shankar Reddy, Pulapet Sowmya, Jaganathan Gowri Shankar, Markkandan Kesavan, Rajapandiyan Krishnamoorthy, Mohammad A Alshuniaber, Magdi A Osman, Mansour K Gatasheh
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引用次数: 0
Characterization of spatio-temporal variations in carposphere microbial diversity of olive in Longnan, China. 陇南油橄榄碳圈微生物多样性时空变化特征
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-02-06 DOI: 10.1007/s11274-026-04819-y
Xiaoyun Zhang, Wenwen Zhang, Yaya Cheng, Min Zhang, Jiali Xie, Shuling Yang, Yongxing Yang, Zhengwu Zhang, Wanming Bai, Weibao Kong

The fruit surface microbiome influences quality formation and disease occurrence, yet carposphere microbial diversity and functions remain poorly studied. This study employed 16S rRNA and ITS high-throughput sequencing technology to investigate the spatiotemporal variation patterns of the olive carposphere microbiome in Longnan City, Gansu Province, China, with respect to cultivars, maturity stages, and geographical locations. The results showed that the olive carposphere bacterial communities were dominated by Proteobacteria, and their abundance increased with fruit ripening. Methylobacterium-Methylorubrum showed significant enrichment at the mature stage, while Streptococcus served as a dominant genus across all geographical regions. For fungal communities, Ascomycota was the predominant phylum, while Nothophoma and Aureobasidium identified as the major genera. Diversity analyses revealed that both bacterial and fungal communities in the olive carposphere varied with cultivar, maturation stage, and geographical location. Among these factors, geographical location emerged as the most dominant driver, which implies that the environment and human activities play an important role in determining the carposphere microbiome. These findings enhance our understanding of the microbial diversity in olive carposphere, also provide valuable species information for the future use of microbial technology to modulate the fruit quality and prevent and control biological diseases.

果实表面微生物群影响果实品质的形成和病害的发生,但对果圈微生物多样性和功能的研究还很少。本研究采用16S rRNA和ITS高通量测序技术,研究了陇南地区橄榄土壤微生物群在品种、成熟期和地理位置上的时空变化规律。结果表明,橄榄果圈细菌群落以变形菌属为主,其丰度随果实成熟而增加。Methylobacterium-Methylorubrum在成熟阶段表现出显著的富集,而Streptococcus在所有地理区域都是优势属。在真菌群落中,子囊菌门是优势门,而微孢子菌门和小孢子菌门是主要属。多样性分析表明,橄榄树碳圈细菌和真菌群落随品种、成熟期和地理位置的不同而变化。在这些因素中,地理位置是最主要的驱动因素,这意味着环境和人类活动在决定碳圈微生物组方面起着重要作用。这些发现增强了我们对橄榄果圈微生物多样性的认识,也为今后利用微生物技术调控果实品质和防治生物病害提供了有价值的物种信息。
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引用次数: 0
Exploring symbiotic legume-rhizobia relationships across tropical species. 探索热带物种中豆科植物与根瘤菌的共生关系。
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-02-06 DOI: 10.1007/s11274-026-04796-2
Keilor Rojas-Jimenez, Jéssica Morera-Huertas, Marianne de Bedout-Mora, Beatriz Loria-Vinueza, Andrés Zúñiga-Orozco, Jose A Molina-Mora, Laura Solís-Ramos, Mario A Blanco, Oscar J Valverde-Barrantes
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引用次数: 0
Probiotic intervention attenuates hypercholesterolemia and modulates gut microbiota in high-fat diet-fed rats. 益生菌干预减轻高脂饮食喂养大鼠的高胆固醇血症和调节肠道微生物群。
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-02-05 DOI: 10.1007/s11274-026-04816-1
Oumaima Chriaa, Maroua Gdoura-Ben Amor, Nour El Houda Mathlouthi, Ahlem Ben Slima, Kamel Mhalhel, Mouna Turki, Faten Hadj Kacem, Antonino Germanà, Mamdouh Ben Ali, Radhouane Gdoura
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引用次数: 0
Genomic safety assessment and metabolic modulation by Enterococcus faecium 140,623, a probiotic strain from lactasin tablets: implications for obesity management. 来自乳糖酶片的益生菌菌株屎肠球菌140,623的基因组安全性评估和代谢调节:对肥胖管理的影响
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-02-05 DOI: 10.1007/s11274-026-04802-7
Yongqi Gan, Cheng Liu, Xiaorui Zheng, Jun Nong, Lanyan Fan, Peng Xie, Yang Li, Bin Zhu, Ling Ning, Zan Zhang
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引用次数: 0
Microbial consortia and drought tolerance- A paradigm shift towards agro-ecological sustainability. 微生物群落和耐旱性——向农业生态可持续性的范式转变。
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-02-04 DOI: 10.1007/s11274-025-04753-5
Mohd Aamir, Khushbu Shah, Durga Prasad Moharana, Shamil Zavdatovich Validov, Waquar Akhter Ansari

Drought stress is one of the major environmental constraints affecting plant growth, development, and economic yield, particularly in vulnerable regions. Conventional plant responses to water scarcity often involve trade-offs that limit yield, posing an urgent need for sustainable strategies to enhance crop resilience. Moreover, decreased crop production, rising inflation, abrupt disease cycling, frequent insect and pest pressures, and other socio-economic issues cumulatively affected global food production and are a concern for nutritional security for expanding populations. Addressing these challenges demands urgent climate adaptation, improved water management, and policy innovation for future resilience. The present review explains the fundamentals of beneficial plant-microbe interactions in mitigating drought stress and utilizing these beneficial microbes, especially microbial consortia, as an integrated approach for gaining agro-ecological sustainability. It brings together current approaches on how plants recruit these stress-tolerant microbes purposefully through changed root exudates and rhizosphere chemistry, and how this changed environment favors the recruited players to work synergistically. Microbial consortia boost the plant performance even under the stressed environment through several key mechanisms, including the synthesis of osmoprotectants, the production of exopolysaccharides for improved water retention and biofilm formation, hormonal changes, antioxidative defense mechanisms, and improved nutrient mobilization under drought conditions. Field applications in several crops demonstrated better performances in growth, yield, and physiological health. However, consortia developed using multiple microbes that have plant growth-promoting properties are more effective than single microbes in alleviating the impacts of drought stress. The application of customized microbial consortia is a potent and environmentally friendly approach for mitigating drought-induced losses, reducing the use of chemicals, and striving toward climate-resilient agriculture. Advanced biotechnological interventions are required in order to address formulation and delivery challenges. Development of SynComs, use of CRISPR/Cas9 technology to enhance microbes, and application of AI and multi-omics technologies for developing efficient and crop-specific microbial inoculants will be the future of efficient agricultural systems.

干旱胁迫是影响植物生长、发育和经济产量的主要环境制约因素之一,特别是在脆弱地区。传统的植物对水资源短缺的反应往往涉及限制产量的权衡,迫切需要可持续的战略来提高作物的抗逆性。此外,作物产量下降、通货膨胀加剧、疾病循环突然、虫害压力频繁以及其他社会经济问题累积影响到全球粮食生产,并对不断增加的人口的营养安全构成关切。应对这些挑战需要迫切适应气候变化、改善水资源管理和政策创新,以增强未来的韧性。本文阐述了有益植物-微生物相互作用在缓解干旱胁迫中的基本原理,并利用这些有益微生物,特别是微生物群落,作为获得农业生态可持续性的综合方法。它汇集了植物如何通过改变根分泌物和根际化学有针对性地招募这些耐受性微生物的现有方法,以及这种变化的环境如何有利于招募的参与者协同工作。即使在逆境环境下,微生物群落也通过几种关键机制提高植物的生产性能,包括渗透保护剂的合成、用于改善水分保持和生物膜形成的外多糖的产生、激素的变化、抗氧化防御机制和干旱条件下营养物质的动员。在几种作物上的田间应用显示出较好的生长、产量和生理健康性能。然而,利用具有促进植物生长特性的多种微生物组成的联合体在缓解干旱胁迫的影响方面比单一微生物更有效。定制微生物群落的应用是一种有效且环保的方法,可以减轻干旱造成的损失,减少化学品的使用,并努力实现气候适应型农业。需要先进的生物技术干预措施,以解决配方和交付方面的挑战。开发SynComs,利用CRISPR/Cas9技术增强微生物,以及应用人工智能和多组学技术开发高效和作物特异性微生物接种剂,将是高效农业系统的未来。
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引用次数: 0
Riboflavin production by lactic acid bacteria: a mini-review. 乳酸菌产生核黄素的综述。
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-02-02 DOI: 10.1007/s11274-026-04807-2
Raziel Arturo Jiménez-Nava, Griselda Ma Chávez-Camarillo, Eliseo Cristiani-Urbina

Riboflavin (RF) or vitamin B2 is an essential micronutrient for redox balance, energy metabolism, and cellular homeostasis. Although RF production titers of lactic acid bacteria (LAB) are lower than those achieved by established industrial microorganisms such as Ashbya gossypii and Bacillus subtilis, LAB are a promising and attractive platform for the development of functional foods and nutraceuticals enriched with RF because they have a generally regarded as safe/qualified presumption of safety status, probiotic potential, natural association with numerous consumed fermented foods, and compatibility with food-grade commercial processes. It has been demonstrated that several RF-producing LAB possess stable phenotypes, survive gastrointestinal conditions, exhibit antimicrobial activity against human pathogens, and display favorable adhesion to intestinal epithelial cells and antibiotic susceptibility profiles. Their industrial feasibility is further strengthened by advances in strategies to enhance their RF biosynthetic capacity, fermentation optimization, and microencapsulation technologies, which improve LAB strain performance, product safety and stability, and RF delivery. Collectively, LAB represent a sustainable, consumer-friendly, and regulatory-compliant solution for enhancing the RF content in foods and beverages and meeting the growing demand for clean-label functional products. This review summarizes the regulatory mechanisms underlying RF biosynthesis, recent advances in RF production, and progress in the development of LAB-based RF-enriched foods.

核黄素(RF)或维生素B2是氧化还原平衡、能量代谢和细胞稳态所必需的微量营养素。尽管乳酸菌(LAB)的RF生产滴度低于已建立的工业微生物,如棉籽Ashbya gossypii和枯草芽孢杆菌,但LAB是开发富含RF的功能食品和营养保健品的一个有前途和有吸引力的平台,因为它们通常被认为是安全/合格的安全状态,益生菌潜力,与许多消费的发酵食品天然相关。以及与食品级商业流程的兼容性。已经证明,几种产生rf的LAB具有稳定的表型,在胃肠道条件下存活,对人类病原体具有抗菌活性,并且对肠上皮细胞具有良好的粘附性和抗生素敏感性。在射频生物合成能力、发酵优化和微胶囊化技术等方面取得的进展进一步加强了它们的工业可行性,这些技术提高了LAB菌株的性能、产品的安全性和稳定性以及射频传递。总的来说,LAB代表了一种可持续的、消费者友好的、符合法规的解决方案,可以提高食品和饮料中的射频含量,满足对清洁标签功能产品日益增长的需求。本文综述了射频生物合成的调控机制、射频生产的最新进展以及基于实验室的射频强化食品的开发进展。
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引用次数: 0
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World journal of microbiology & biotechnology
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