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Genomic safety assessment and metabolic modulation by Enterococcus faecium 140,623, a probiotic strain from lactasin tablets: implications for obesity management. 来自乳糖酶片的益生菌菌株屎肠球菌140,623的基因组安全性评估和代谢调节:对肥胖管理的影响
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-02-05 DOI: 10.1007/s11274-026-04802-7
Yongqi Gan, Cheng Liu, Xiaorui Zheng, Jun Nong, Lanyan Fan, Peng Xie, Yang Li, Bin Zhu, Ling Ning, Zan Zhang
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引用次数: 0
Microbial consortia and drought tolerance- A paradigm shift towards agro-ecological sustainability. 微生物群落和耐旱性——向农业生态可持续性的范式转变。
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-02-04 DOI: 10.1007/s11274-025-04753-5
Mohd Aamir, Khushbu Shah, Durga Prasad Moharana, Shamil Zavdatovich Validov, Waquar Akhter Ansari

Drought stress is one of the major environmental constraints affecting plant growth, development, and economic yield, particularly in vulnerable regions. Conventional plant responses to water scarcity often involve trade-offs that limit yield, posing an urgent need for sustainable strategies to enhance crop resilience. Moreover, decreased crop production, rising inflation, abrupt disease cycling, frequent insect and pest pressures, and other socio-economic issues cumulatively affected global food production and are a concern for nutritional security for expanding populations. Addressing these challenges demands urgent climate adaptation, improved water management, and policy innovation for future resilience. The present review explains the fundamentals of beneficial plant-microbe interactions in mitigating drought stress and utilizing these beneficial microbes, especially microbial consortia, as an integrated approach for gaining agro-ecological sustainability. It brings together current approaches on how plants recruit these stress-tolerant microbes purposefully through changed root exudates and rhizosphere chemistry, and how this changed environment favors the recruited players to work synergistically. Microbial consortia boost the plant performance even under the stressed environment through several key mechanisms, including the synthesis of osmoprotectants, the production of exopolysaccharides for improved water retention and biofilm formation, hormonal changes, antioxidative defense mechanisms, and improved nutrient mobilization under drought conditions. Field applications in several crops demonstrated better performances in growth, yield, and physiological health. However, consortia developed using multiple microbes that have plant growth-promoting properties are more effective than single microbes in alleviating the impacts of drought stress. The application of customized microbial consortia is a potent and environmentally friendly approach for mitigating drought-induced losses, reducing the use of chemicals, and striving toward climate-resilient agriculture. Advanced biotechnological interventions are required in order to address formulation and delivery challenges. Development of SynComs, use of CRISPR/Cas9 technology to enhance microbes, and application of AI and multi-omics technologies for developing efficient and crop-specific microbial inoculants will be the future of efficient agricultural systems.

干旱胁迫是影响植物生长、发育和经济产量的主要环境制约因素之一,特别是在脆弱地区。传统的植物对水资源短缺的反应往往涉及限制产量的权衡,迫切需要可持续的战略来提高作物的抗逆性。此外,作物产量下降、通货膨胀加剧、疾病循环突然、虫害压力频繁以及其他社会经济问题累积影响到全球粮食生产,并对不断增加的人口的营养安全构成关切。应对这些挑战需要迫切适应气候变化、改善水资源管理和政策创新,以增强未来的韧性。本文阐述了有益植物-微生物相互作用在缓解干旱胁迫中的基本原理,并利用这些有益微生物,特别是微生物群落,作为获得农业生态可持续性的综合方法。它汇集了植物如何通过改变根分泌物和根际化学有针对性地招募这些耐受性微生物的现有方法,以及这种变化的环境如何有利于招募的参与者协同工作。即使在逆境环境下,微生物群落也通过几种关键机制提高植物的生产性能,包括渗透保护剂的合成、用于改善水分保持和生物膜形成的外多糖的产生、激素的变化、抗氧化防御机制和干旱条件下营养物质的动员。在几种作物上的田间应用显示出较好的生长、产量和生理健康性能。然而,利用具有促进植物生长特性的多种微生物组成的联合体在缓解干旱胁迫的影响方面比单一微生物更有效。定制微生物群落的应用是一种有效且环保的方法,可以减轻干旱造成的损失,减少化学品的使用,并努力实现气候适应型农业。需要先进的生物技术干预措施,以解决配方和交付方面的挑战。开发SynComs,利用CRISPR/Cas9技术增强微生物,以及应用人工智能和多组学技术开发高效和作物特异性微生物接种剂,将是高效农业系统的未来。
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引用次数: 0
Riboflavin production by lactic acid bacteria: a mini-review. 乳酸菌产生核黄素的综述。
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-02-02 DOI: 10.1007/s11274-026-04807-2
Raziel Arturo Jiménez-Nava, Griselda Ma Chávez-Camarillo, Eliseo Cristiani-Urbina

Riboflavin (RF) or vitamin B2 is an essential micronutrient for redox balance, energy metabolism, and cellular homeostasis. Although RF production titers of lactic acid bacteria (LAB) are lower than those achieved by established industrial microorganisms such as Ashbya gossypii and Bacillus subtilis, LAB are a promising and attractive platform for the development of functional foods and nutraceuticals enriched with RF because they have a generally regarded as safe/qualified presumption of safety status, probiotic potential, natural association with numerous consumed fermented foods, and compatibility with food-grade commercial processes. It has been demonstrated that several RF-producing LAB possess stable phenotypes, survive gastrointestinal conditions, exhibit antimicrobial activity against human pathogens, and display favorable adhesion to intestinal epithelial cells and antibiotic susceptibility profiles. Their industrial feasibility is further strengthened by advances in strategies to enhance their RF biosynthetic capacity, fermentation optimization, and microencapsulation technologies, which improve LAB strain performance, product safety and stability, and RF delivery. Collectively, LAB represent a sustainable, consumer-friendly, and regulatory-compliant solution for enhancing the RF content in foods and beverages and meeting the growing demand for clean-label functional products. This review summarizes the regulatory mechanisms underlying RF biosynthesis, recent advances in RF production, and progress in the development of LAB-based RF-enriched foods.

核黄素(RF)或维生素B2是氧化还原平衡、能量代谢和细胞稳态所必需的微量营养素。尽管乳酸菌(LAB)的RF生产滴度低于已建立的工业微生物,如棉籽Ashbya gossypii和枯草芽孢杆菌,但LAB是开发富含RF的功能食品和营养保健品的一个有前途和有吸引力的平台,因为它们通常被认为是安全/合格的安全状态,益生菌潜力,与许多消费的发酵食品天然相关。以及与食品级商业流程的兼容性。已经证明,几种产生rf的LAB具有稳定的表型,在胃肠道条件下存活,对人类病原体具有抗菌活性,并且对肠上皮细胞具有良好的粘附性和抗生素敏感性。在射频生物合成能力、发酵优化和微胶囊化技术等方面取得的进展进一步加强了它们的工业可行性,这些技术提高了LAB菌株的性能、产品的安全性和稳定性以及射频传递。总的来说,LAB代表了一种可持续的、消费者友好的、符合法规的解决方案,可以提高食品和饮料中的射频含量,满足对清洁标签功能产品日益增长的需求。本文综述了射频生物合成的调控机制、射频生产的最新进展以及基于实验室的射频强化食品的开发进展。
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引用次数: 0
Bacterial ghosts (BGs): A promising approach as candidate vaccine. 细菌幽灵(BGs):一种很有前途的候选疫苗。
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-31 DOI: 10.1007/s11274-026-04783-7
Helal F Hetta, Ibraheem M Mwafey, Noura H Abd Ellah, Fawaz E Alanazi, Yasmin N Ramadan

Bacterial ghosts (BGs) are an emerging vaccine platform produced by completely removing the cytoplasmic contents of bacterial cells while preserving their native surface architecture. This unique structural integrity enables BGs to function simultaneously as safe, non-living vaccines and efficient delivery vehicles. Recent advances in both genetic (phage lysis gene E) and chemical "sponge-like" protocols have expanded the range of microorganisms from which BGs can be produced, improving safety, scalability, and antigenic stability. This review summarizes current progress in BG technology with a focus on their innovative applications as antibacterial, antifungal, and anticancer vaccines; adjuvants; and carriers for DNA, proteins, and bioactive molecules. Particular emphasis is placed on emerging directions such as yeast and fungal ghosts, novel characterization methods, and the development of BG-based nano-vaccines. Future prospects highlight the need for standardized production, improved clinical translation, and comparative evaluation with related platforms such as membrane vesicles. Together, these advancements position BGs as a promising next-generation vaccine and drug-delivery strategy with significant potential for translational impact.

细菌幽灵(BGs)是一种新兴的疫苗平台,通过完全去除细菌细胞的细胞质内容物而保留其天然表面结构。这种独特的结构完整性使BGs能够同时作为安全的非活疫苗和有效的运载工具发挥作用。遗传(噬菌体裂解基因E)和化学“海绵状”方案的最新进展扩大了生产BGs的微生物范围,提高了安全性、可扩展性和抗原性稳定性。本文综述了目前BG技术的进展,重点介绍了其在抗菌、抗真菌和抗癌疫苗方面的创新应用;佐剂;也是DNA、蛋白质和生物活性分子的载体。特别强调的是新兴方向,如酵母和真菌幽灵,新的表征方法,以及开发基于bg的纳米疫苗。未来的前景强调需要标准化生产,改进临床翻译,并与膜泡等相关平台进行比较评估。总之,这些进展使BGs成为一种有希望的下一代疫苗和药物递送策略,具有巨大的转化影响潜力。
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引用次数: 0
Environmental occurrence of optrA-mediated linezolid resistance in Enterococcus isolates and genomic insights into Enterococcus faecium ST54 co-harboring optrA, poxtA, and cfr(D) genes. optrA介导的利奈唑类药物耐药性在分离肠球菌中的环境发生,以及共同携带optrA、poxtA和cfr(D)基因的屎肠球菌ST54的基因组研究
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-31 DOI: 10.1007/s11274-026-04786-4
Lucas David Rodrigues Dos Santos, João Pedro Rueda Furlan, Rafael da Silva Rosa, Micaela Santana Ramos, Letícia Franco Gervasoni, Eduardo Angelino Savazzi, Teresa Nogueira, Eliana Guedes Stehling
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引用次数: 0
Water-soluble Cordyceps melanin: a photoprotector that enhances the survival of Beauveria bassiana and Metarhizium acridum conidia under UV-B radiation. 水溶性冬虫夏草黑色素:一种增强球孢白僵菌和绿僵菌在UV-B辐射下存活的光保护剂。
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-30 DOI: 10.1007/s11274-026-04806-3
Gerardo Suárez-Vergel, Nohemi García-Ortiz, Octavio Loera, Marcos López-Pérez

Melanin is a pigmentated polymer with antioxidant capacity, and it also plays a role as a quality factor in those fungi that can synthetize it. However, this pigment is soluble only in alkaline solutions, limiting its application. This work used ultrasonication of fungal melanin, extracted from nonviable Cordyceps javanica CHE-CNRCB 307 conidia, and obtained hydrophilic melanin. Suspensions of freshly harvested conidia from Beauveria bassiana CHE-CNRCB 614 or Metarhizium acridum CHE-CNRCB 213 were prepared with a hydrophilic melanin solution at 0.1 mg/mL. These conidia formulations were more resistant to UV-B radiation, up to 34.9%, 26.2%, and 23.3% higher than those without hydrophilic melanin at doses of 10, 14, and 18 kJ/m², respectively, without affecting the virulence or thermotolerance parameters. Based on these results, hydrophilic melanin served as a compatible photoprotector in conidia suspensions from two widely entomopathogenic fungi used in biological control. In addition, the hydrophilic melanin source can be Cordyceps javanica conidia, which keeps melanin beyond the loss of viability, with high added value.

黑色素是一种具有抗氧化能力的色素聚合物,它也在那些能够合成它的真菌中起着质量因子的作用。然而,这种颜料只能在碱性溶液中溶解,限制了它的应用。本研究采用超声法提取非活菌爪牙虫草CHE-CNRCB 307分生孢子中的真菌黑色素,得到亲水性黑色素。用0.1 mg/mL亲水性黑色素溶液制备球孢白僵菌CHE-CNRCB 614或酸霉酸僵菌CHE-CNRCB 213新收获的分生孢子悬液。在10、14和18 kJ/m²剂量下,这些分生孢子配方对UV-B辐射的抗性分别比不含亲水性黑色素的分生孢子配方高34.9%、26.2%和23.3%,且不影响毒力和耐热性参数。基于这些结果,亲水性黑色素在两种广泛用于生物防治的昆虫病原真菌的分生孢子悬浮液中作为相容的光保护剂。此外,亲水性黑色素来源可以是爪牙虫草分生孢子,使黑色素保持在生存力丧失之外,具有较高的附加值。
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引用次数: 0
Evaluation of the efficacy of inactivated fecal transplants against Clostridioides difficile: an in vitro study. 失活粪便移植物抗艰难梭菌效果的评价:一项体外研究。
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-29 DOI: 10.1007/s11274-025-04767-z
Vinciane Baillieu, Johanne Delannoy, Nathalie Kapel, Frédéric Barbut, Alexis Mosca, Anne Christine Joly, Anne-Judith Waligora-Dupriet, Rachel Sintes
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引用次数: 0
A review on bioprocesses for the recovery of rare earth elements and its challenges. 稀土元素生物回收研究进展及面临的挑战。
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-27 DOI: 10.1007/s11274-025-04761-5
Diego Teuber Gijon, Luciana Jandelli Gimenes, Jorge Alberto Soares Tenório, Marcela Dos Passos Galluzzi Baltazar

Rare earth elements (REE) are metals in great demand by the overall industry, they are present in most electronic equipment, ceramics and green energy generation. The REE are currently at high risk of supply and have become critical to world development. The increasing demand for REE brings out the necessity to obtain these metals from multiple sources. Chemically centered processes like leaching and resin adsorption have been the predominant techniques to extract REE from primary and secondary sources. These processes are harsh and damaging to the environment due to the use of strong inorganic acids, high temperatures and low regeneration potential. It has become necessary to find ways to obtain these metals without causing environmental harm. Bioprocesses may prove to be a potential solution to the extraction and recovery of REE in a less harmful way. Bioprocesses involve the use of microorganisms to produce acids, chelating substances or to serve as sorbates, allowing for the solubilization and adsorption of metals, respectively. Since these processes utilize microorganisms, they can be seen as renewable and clean, though selectivity and process time may impact effectiveness. In this review the two main bioprocesses: bioleaching and biosorption will be analyzed regarding their mechanisms, process parameters and challenges, a comparison discussing the two is also expressed.

稀土元素(REE)是整个工业需求量很大的金属,它们存在于大多数电子设备,陶瓷和绿色能源发电中。稀土元素目前的供应风险很高,对世界发展至关重要。稀土需求的不断增长带来了从多种来源获取这些金属的必要性。浸出和树脂吸附等以化学为中心的方法已成为从一次源和二次源提取稀土元素的主要技术。由于使用强无机酸、高温和低再生潜力,这些过程对环境造成了恶劣和破坏。找到不造成环境危害的方法获得这些金属已成为必要。生物过程可能被证明是一种潜在的解决方案,以一种危害较小的方式提取和回收稀土元素。生物过程包括利用微生物产生酸、螯合物质或作为山梨酸盐,分别允许金属的增溶和吸附。由于这些过程利用微生物,它们可以被视为可再生和清洁,尽管选择性和处理时间可能会影响有效性。本文对生物浸出和生物吸附这两种主要的生物工艺的机理、工艺参数和面临的挑战进行了分析,并对两者进行了比较。
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引用次数: 0
Biohealing through biocalcification by urolytic bacteria Bacillus subtilis ATCC 6633 on marble surfaces. 尿溶细菌枯草芽孢杆菌ATCC 6633在大理石表面通过生物钙化进行生物愈合。
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-27 DOI: 10.1007/s11274-026-04798-0
Turkan Dal Bicer, Seval Cing Yildirim, Fadime Nulufer Kivilcim, Ahmet Gultek

This study investigates the biocalcification potential of Bacillus subtilis ATCC 6633, a ureolytic bacterium, for the biohealing of marble surfaces through calcium carbonate (CaCO₃) precipitation. Comparative experiments were conducted using live and dead bacterial cells on CO₂-pre-treated and untreated marble samples, with calcium chloride and calcium acetate employed as calcium sources, to evaluate their effects on crystal polymorphism and surface modification. The results show that bacterial viability and calcium source jointly influence mineral phase formation, with live cells predominantly promoting the formation of stable calcite and aragonite, whereas dead cells and calcium acetate favor the formation of metastable vaterite. Microstructural and mineralogical analyses using scanning electron microscopy (SEM), energy-dispersive X-ray spectroscopy (EDX), X-ray diffraction (XRD), and atomic force microscopy (AFM) confirmed substantial CaCO₃ deposition on marble surfaces. AFM measurements indicated a reduction in maximum pore depth, defined as the vertical height difference between pore bottoms and the surrounding marble surface, from 35.00 ± 7.07 μm in control samples to 22.50 ± 8.20 μm in biocalcified samples, reflecting partial filling of pores and cracks. In addition, micropores (0.02-0.03 mm) were fully filled, while macropores (3-5 mm) were partially occluded by crystalline deposits. CO₂ pre-treatment enhanced surface carbon availability and promoted more uniform CaCO₃ nucleation, as supported by SEM-EDX and XRD analyses. Overall, these findings indicate that microbially induced carbonate precipitation (MICP), combined with appropriate surface preconditioning and calcium source selection, represents a potential and sustainable strategy for marble conservation and related bio-construction applications.

这项研究调查了枯草芽孢杆菌ATCC 6633的生物钙化潜力,这是一种溶尿细菌,通过碳酸钙(CaCO₃)沉淀对大理石表面进行生物愈合。以氯化钙和醋酸钙为钙源,在CO₂预处理和未处理的大理石样品上进行了活菌和死菌的对比实验,考察了它们对晶体多态性和表面修饰的影响。结果表明,细菌活力和钙源共同影响矿物相的形成,活细胞主要促进稳定方解石和文石的形成,而死细胞和醋酸钙则有利于亚稳水晶石的形成。使用扫描电子显微镜(SEM)、能量色散x射线光谱(EDX)、x射线衍射(XRD)和原子力显微镜(AFM)进行的微观结构和矿物学分析证实,大理石表面有大量的CaCO₃沉积。AFM测量表明,最大孔隙深度(孔隙底部与周围大理石表面之间的垂直高度差)从对照样品的35.00±7.07 μm减少到生物钙化样品的22.50±8.20 μm,反映了孔隙和裂缝的部分填充。微孔(0.02 ~ 0.03 mm)被完全填充,而大孔(3 ~ 5 mm)被结晶沉积部分堵塞。SEM-EDX和XRD分析表明,CO₂预处理提高了表面碳的可用性,促进了更均匀的CaCO₃成核。总的来说,这些发现表明,微生物诱导的碳酸盐沉淀(MICP),结合适当的表面预处理和钙源选择,代表了大理石保护和相关生物建筑应用的潜在和可持续的策略。
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引用次数: 0
Physicochemical and microbial analysis of sugarcane press mud reveals ligninolytic and plant growth-promoting bacteria with soil amendment potential. 对甘蔗压榨泥进行理化和微生物学分析,发现木质素分解菌和植物生长促进菌具有土壤改良剂的潜力。
IF 4.2 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-27 DOI: 10.1007/s11274-025-04772-2
Sana Bano, Kshitij Singh, Anjali Chaudhary, Diane Purchase, Ram Chandra

Press mud is an acidic by-product of sugarcane processing that is commonly discarded, despite containing components with potential agricultural value. This study assessed sugarcane mill press mud through physicochemical, microbiological and enzymatic analyses to evaluate its environmental implications and suitability as a soil amendment. The material was slightly acidic (pH 6.4) and rich in essential nutrients, including potassium (1061.06 ppm), magnesium (624.96 ppm), calcium (461.06 ppm) and phosphorus (513.11 ppm). However, elevated metals such as aluminium (2083.22 ppm), iron (2342.57 ppm), manganese (85.90 ppm), zinc (60.84 ppm), copper (17.70 ppm), lead (3.10 ppm) and chromium (4.18 ppm), together with the detection of the pollutant 2,4-di-tert-butylphenol (2,4-DTBP), suggest the need for proper regulated application to mitigate environmental risks. Microbial profiling across acidic (6.4), neutral (7.0) and alkaline (9.5) conditions revealed diverse bacterial taxa. Acidic conditions yielded Escherichia coli (PQ001953), Bacillus licheniformis (PQ001957) and Moraxella catarrhalis (PQ047632); neutral conditions favored Herbaspirillum seropedicae (PQ008927), Enterococcus faecium (PQ012564) and Micrococcus luteus (PQ012569); while alkaline conditions supported Bacillus subtilis (PQ012572), Listeria ivanovii (PQ060442) and Paracoccus pantotrophus (PQ012574). Notably, E. coli, H. seropedicae and M. luteus exhibited pronounced ligninolytic enzyme activity, indicating a capacity to degrade complex organic substrates. Plant growth trials using mustard (Brassica campestris) demonstrated that a 5:1 soil-to-press-mud ratio significantly enhanced plant growth relative to untreated soil. Collectively, these findings indicate that when applied in controlled quantities, press mud, represents a promising bioresource with valuable ligninolytic and plant growth-promoting microbial communities, while warranting careful oversight due to its contaminant load.

压榨泥是甘蔗加工的酸性副产物,尽管含有潜在的农业价值成分,但通常被丢弃。本研究通过理化、微生物学和酶学分析对甘蔗压榨泥进行了评价,以评价其作为土壤改良剂的环境影响和适用性。这种材料呈微酸性(pH 6.4),富含必需的营养物质,包括钾(1061.06 ppm)、镁(624.96 ppm)、钙(461.06 ppm)和磷(513.11 ppm)。然而,铝(2083.22 ppm)、铁(2342.57 ppm)、锰(85.90 ppm)、锌(60.84 ppm)、铜(17.70 ppm)、铅(3.10 ppm)和铬(4.18 ppm)等金属含量升高,以及污染物2,4-二叔丁基酚(2,4- dtbp)的检测表明,需要适当的监管应用,以减轻环境风险。在酸性(6.4)、中性(7.0)和碱性(9.5)条件下,微生物谱显示出不同的细菌分类群。酸性条件下产生大肠杆菌(PQ001953)、地衣芽孢杆菌(PQ001957)和卡他莫拉菌(PQ047632);中性条件有利于血清草球菌(PQ008927)、屎肠球菌(PQ012564)和黄体微球菌(PQ012569);碱性条件下支持枯草芽孢杆菌(Bacillus subtilis, PQ012572)、伊万诺维奇李斯特菌(Listeria ivanovii, PQ060442)和滋养副球菌(paraccoccus pantotrophus, PQ012574)。值得注意的是,大肠杆菌,H. seropedicae和M. luteus表现出明显的木质素分解酶活性,表明它们有能力降解复杂的有机底物。使用芥菜(Brassica campestris)的植物生长试验表明,与未经处理的土壤相比,5:1的土壤与压泥比显著促进了植物的生长。总的来说,这些发现表明,当用量控制时,压榨泥是一种有前途的生物资源,具有有价值的木质素分解和促进植物生长的微生物群落,同时由于其污染物负荷需要仔细监督。
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引用次数: 0
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World journal of microbiology & biotechnology
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