Pub Date : 2023-12-08DOI: 10.1007/s11274-023-03851-6
Azadeh Eskandari, Nima Ghahremani Nezhad, Thean Chor Leow, Mohd Basyaruddin Abdul Rahman, Siti Nurbaya Oslan
Yeasts serve as exceptional hosts in the manufacturing of functional protein engineering and possess industrial or medical utilities. Considerable focus has been directed towards yeast owing to its inherent benefits and recent advancements in this particular cellular host. The Pichia pastoris expression system is widely recognized as a prominent and widely accepted instrument in molecular biology for the purpose of generating recombinant proteins. The advantages of utilizing the P. pastoris system for protein production encompass the proper folding process occurring within the endoplasmic reticulum (ER), as well as the subsequent secretion mediated by Kex2 as a signal peptidase, ultimately leading to the release of recombinant proteins into the extracellular environment of the cell. In addition, within the P. pastoris expression system, the ease of purifying recombinant protein arises from its restricted synthesis of endogenous secretory proteins. Despite its achievements, scientists often encounter persistent challenges when attempting to utilize yeast for the production of recombinant proteins. This review is dedicated to discussing the current achievements in the usage of P. pastoris as an expression host. Furthermore, it sheds light on the strategies employed in the expression system and the optimization and development of the fermentative process of this yeast. Finally, the impediments (such as identifying high expression strains, improving secretion efficiency, and decreasing hyperglycosylation) and successful resolution of certain difficulties are put forth and deliberated upon in order to assist and promote the expression of complex proteins in this prevalent recombinant host.
酵母是制造功能蛋白质工程的特殊宿主,具有工业或医学用途。由于酵母固有的优点以及这种特殊细胞宿主的最新进展,酵母受到了广泛关注。Pichia pastoris 表达系统被公认为是分子生物学中用于生成重组蛋白的一种重要且广为接受的工具。利用 P. pastoris 系统生产蛋白质的优势包括在内质网(ER)内发生的适当折叠过程,以及随后由作为信号肽酶的 Kex2 介导的分泌,最终导致重组蛋白质释放到细胞外环境中。此外,在 P. pastoris 表达系统中,由于内源性分泌蛋白的合成受到限制,因此很容易纯化重组蛋白。尽管酵母取得了巨大的成就,但科学家们在尝试利用酵母生产重组蛋白时仍经常会遇到各种挑战。本综述将专门讨论目前在使用 P. pastoris 作为表达宿主方面所取得的成就。此外,它还揭示了表达系统中采用的策略以及该酵母发酵过程的优化和发展。最后,还提出并讨论了一些障碍(如确定高表达菌株、提高分泌效率和减少高糖基化)和某些困难的成功解决方法,以帮助和促进复杂蛋白质在这种常用重组宿主中的表达。
{"title":"Current achievements, strategies, obstacles, and overcoming the challenges of the protein engineering in Pichia pastoris expression system","authors":"Azadeh Eskandari, Nima Ghahremani Nezhad, Thean Chor Leow, Mohd Basyaruddin Abdul Rahman, Siti Nurbaya Oslan","doi":"10.1007/s11274-023-03851-6","DOIUrl":"https://doi.org/10.1007/s11274-023-03851-6","url":null,"abstract":"<p>Yeasts serve as exceptional hosts in the manufacturing of functional protein engineering and possess industrial or medical utilities. Considerable focus has been directed towards yeast owing to its inherent benefits and recent advancements in this particular cellular host. The <i>Pichia pastoris</i> expression system is widely recognized as a prominent and widely accepted instrument in molecular biology for the purpose of generating recombinant proteins. The advantages of utilizing the <i>P. pastoris</i> system for protein production encompass the proper folding process occurring within the endoplasmic reticulum (ER), as well as the subsequent secretion mediated by Kex2 as a signal peptidase, ultimately leading to the release of recombinant proteins into the extracellular environment of the cell. In addition, within the <i>P. pastoris</i> expression system, the ease of purifying recombinant protein arises from its restricted synthesis of endogenous secretory proteins. Despite its achievements, scientists often encounter persistent challenges when attempting to utilize yeast for the production of recombinant proteins. This review is dedicated to discussing the current achievements in the usage of <i>P. pastoris</i> as an expression host. Furthermore, it sheds light on the strategies employed in the expression system and the optimization and development of the fermentative process of this yeast. Finally, the impediments (such as identifying high expression strains, improving secretion efficiency, and decreasing hyperglycosylation) and successful resolution of certain difficulties are put forth and deliberated upon in order to assist and promote the expression of complex proteins in this prevalent recombinant host.</p>","PeriodicalId":23744,"journal":{"name":"World Journal of Microbiology and Biotechnology","volume":"11 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138556850","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The production of extended-spectrum β-lactamases (ESBLs) and AmpC β-lactamases is the most common explanation of multidrug resistance in clinical isolates of Klebsiella spp. In the present study, a total of 160 isolates of Klebsiella spp. were procured from the DBT-NER project with ethical clearance no. DU/Dib/ECBHR(Human)/2021-22/02). These were collected from various health settings of Assam and identified as drug-resistant. The isolates were screened for antibiotic susceptibility and phenotypic tests were performed on multidrug resistant isolates to confirm ESBL and AmpC β-lactamases production. The distribution pattern of ESBL and AmpC β-lactamase genotype was investigated by polymerase chain reaction (PCR). The results showed that among 107 multidrug-resistant (MDR) isolates of Klebsiella spp., 67.28% of isolates were ESBL producers and 56.07% were potential AmpC producers. The PCR results revealed that blaCTX−M was the most prevalent ESBL genotype. Among the ESBL producers, 11.11% of isolates showed co-occurrence with plasmid-mediated AmpC β lactamases genotype which indicated the high prevalence of ESBL and AmpC co-producers in K. pneumoniae and K. oxytoca, suggesting the possibility of serious public health concerns. Therefore, it is crucial to regularly monitor the spread of multidrug resistance among clinical isolates.
{"title":"Prevalence and distribution pattern of AmpC β-lactamases in ESBL producing clinical isolates of Klebsiella spp. in parts of Assam, India","authors":"Indrani Gogoi, Shyamalima Saikia, Mohan Sharma, Amos Oloo Onyango, Minakshi Puzari, Pankaj Chetia","doi":"10.1007/s11274-023-03846-3","DOIUrl":"https://doi.org/10.1007/s11274-023-03846-3","url":null,"abstract":"<p>The production of extended-spectrum β-lactamases (ESBLs) and AmpC β-lactamases is the most common explanation of multidrug resistance in clinical isolates of <i>Klebsiella</i> spp. In the present study, a total of 160 isolates of <i>Klebsiella</i> spp. were procured from the DBT-NER project with ethical clearance no. DU/Dib/ECBHR(Human)/2021-22/02). These were collected from various health settings of Assam and identified as drug-resistant. The isolates were screened for antibiotic susceptibility and phenotypic tests were performed on multidrug resistant isolates to confirm ESBL and AmpC β-lactamases production. The distribution pattern of ESBL and AmpC β-lactamase genotype was investigated by polymerase chain reaction (PCR). The results showed that among 107 multidrug-resistant (MDR) isolates of <i>Klebsiella</i> spp., 67.28% of isolates were ESBL producers and 56.07% were potential AmpC producers. The PCR results revealed that <i>bla</i><sub>CTX−M</sub> was the most prevalent ESBL genotype. Among the ESBL producers, 11.11% of isolates showed co-occurrence with plasmid-mediated AmpC β lactamases genotype which indicated the high prevalence of ESBL and AmpC co-producers in <i>K. pneumoniae</i> and <i>K. oxytoca</i>, suggesting the possibility of serious public health concerns. Therefore, it is crucial to regularly monitor the spread of multidrug resistance among clinical isolates.</p>","PeriodicalId":23744,"journal":{"name":"World Journal of Microbiology and Biotechnology","volume":"9 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138556790","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-10-27DOI: 10.1007/s11274-022-03418-x
Mahboubeh Adeli-sardou, Mojtaba Shakibaie, H. Forootanfar, Fereshteh Jabari-Morouei, Soudabe Riahi-Madvar, Sima-Sadat Ghafari-Shahrbabaki, M. Mehrabani
{"title":"Cytotoxicity and anti-biofilm activities of biogenic cadmium nanoparticles and cadmium nitrate: a preliminary study","authors":"Mahboubeh Adeli-sardou, Mojtaba Shakibaie, H. Forootanfar, Fereshteh Jabari-Morouei, Soudabe Riahi-Madvar, Sima-Sadat Ghafari-Shahrbabaki, M. Mehrabani","doi":"10.1007/s11274-022-03418-x","DOIUrl":"https://doi.org/10.1007/s11274-022-03418-x","url":null,"abstract":"","PeriodicalId":23744,"journal":{"name":"World Journal of Microbiology and Biotechnology","volume":"1 1","pages":"1-13"},"PeriodicalIF":0.0,"publicationDate":"2022-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"74982035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-10-27DOI: 10.1007/s11274-022-03420-3
Leticia Francisca da Silva, Ana Patrícia Sousa Lopes de Pádua, Layanne de Oliveira Ferro, G. S. Agamez-Montalvo, J. Bezerra, K. Moreira, C. M. de Souza-Motta
{"title":"Cacti as low-cost substrates to produce L-asparaginase by endophytic fungi","authors":"Leticia Francisca da Silva, Ana Patrícia Sousa Lopes de Pádua, Layanne de Oliveira Ferro, G. S. Agamez-Montalvo, J. Bezerra, K. Moreira, C. M. de Souza-Motta","doi":"10.1007/s11274-022-03420-3","DOIUrl":"https://doi.org/10.1007/s11274-022-03420-3","url":null,"abstract":"","PeriodicalId":23744,"journal":{"name":"World Journal of Microbiology and Biotechnology","volume":"39 1","pages":"1-13"},"PeriodicalIF":0.0,"publicationDate":"2022-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"80954608","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-06-16DOI: 10.1007/s11274-022-03319-z
Raghvendra Tiwari, Kajal Chandra, S K Shukla, V P Jaiswal, Natarajan Amaresan, Abhay Kumar Srivastava, Asha Gaur, Divya Sahni, Rajesh Kumar Tiwari
Tremendous benefits have been derived from the use of fungicides but excessive use of chemical fungicides not only posing threat to human and animal life but also contaminates the prevailing environment. Damage by pathogenic fungi alone causes significant damage to crops like maize, rice, wheat, soybeans, and potatoes. Therefore, it becomes imperative that these diseases are checked and controlled, for which chemical pesticides are being sprayed on plants extensively. Considering the devastating damage and toxicity, the global focus has taken a drift from synthetic chemicals to nature-friendly biological control agents. The present study focuses on the use of biological control agents particularly Trichoderma in sugarcane during Pokkah boeng infection. In the present experiment, twenty promising Trichoderma strains were evaluated for plant growth promotion, lytic enzymes, and physiological and biocontrol activity. Out of the twenty, four potential Trichoderma strains were assessed in the pot experiment viz. T. harzianum strain T28, T41 and T49 and T. aureoviride strain T38. The T. harzianum (T28) showed efficient plant growth-promoting traits as it produced IAA (20.67 µg/ml), phosphorus solubilization (18.57 µg/ml), and cell wall degrading enzymes such as chitinase (24.98 µg/ml) and β-glucanase (29.98 µg/ml). The interference of biocontrol agent T. harzianum (T28) controlled the disease by 73.55%. Apart from this, the inoculation of Trichoderma (T28) enhanced growth attributes including germination percentage (26.61%), mean tiller number (8.28 tiller/pot), individual cane length (241.5 cm), single cane weight (1.13 kg) and the number of milleable canes (6.00 cane/pot). Improvements in physiological activities at different growth stages of the sugarcane crop were observed based on the photosynthetically active radiation (PAR) on the leaf surface, transpiration rate, stomatal conductance, and photosynthetic rate. Further, improvement in juice quality parameters was also observed as it recorded the highest 0brix, sucrose, and commercial cane sugar by 21.26%, 19.28%, and 13.50%, respectively, by applying T. harzianum strain T28. Thus, results proved that T. harzianum strain T28 may be an effective eco-friendly biocontrol tool for managing Pokkah boeng disease in sugarcane. This is the first report of the biocontrol potential of Trichoderma spp. against Fusarium proliferatum causing Pokkah boeng disease in sugarcane.
{"title":"Interference of bio-control Trichoderma to enhance physical and physiological strength of sugarcane during Pokkah boeng infection.","authors":"Raghvendra Tiwari, Kajal Chandra, S K Shukla, V P Jaiswal, Natarajan Amaresan, Abhay Kumar Srivastava, Asha Gaur, Divya Sahni, Rajesh Kumar Tiwari","doi":"10.1007/s11274-022-03319-z","DOIUrl":"10.1007/s11274-022-03319-z","url":null,"abstract":"<p><p>Tremendous benefits have been derived from the use of fungicides but excessive use of chemical fungicides not only posing threat to human and animal life but also contaminates the prevailing environment. Damage by pathogenic fungi alone causes significant damage to crops like maize, rice, wheat, soybeans, and potatoes. Therefore, it becomes imperative that these diseases are checked and controlled, for which chemical pesticides are being sprayed on plants extensively. Considering the devastating damage and toxicity, the global focus has taken a drift from synthetic chemicals to nature-friendly biological control agents. The present study focuses on the use of biological control agents particularly Trichoderma in sugarcane during Pokkah boeng infection. In the present experiment, twenty promising Trichoderma strains were evaluated for plant growth promotion, lytic enzymes, and physiological and biocontrol activity. Out of the twenty, four potential Trichoderma strains were assessed in the pot experiment viz. T. harzianum strain T28, T41 and T49 and T. aureoviride strain T38. The T. harzianum (T28) showed efficient plant growth-promoting traits as it produced IAA (20.67 µg/ml), phosphorus solubilization (18.57 µg/ml), and cell wall degrading enzymes such as chitinase (24.98 µg/ml) and β-glucanase (29.98 µg/ml). The interference of biocontrol agent T. harzianum (T28) controlled the disease by 73.55%. Apart from this, the inoculation of Trichoderma (T28) enhanced growth attributes including germination percentage (26.61%), mean tiller number (8.28 tiller/pot), individual cane length (241.5 cm), single cane weight (1.13 kg) and the number of milleable canes (6.00 cane/pot). Improvements in physiological activities at different growth stages of the sugarcane crop were observed based on the photosynthetically active radiation (PAR) on the leaf surface, transpiration rate, stomatal conductance, and photosynthetic rate. Further, improvement in juice quality parameters was also observed as it recorded the highest <sup>0</sup>brix, sucrose, and commercial cane sugar by 21.26%, 19.28%, and 13.50%, respectively, by applying T. harzianum strain T28. Thus, results proved that T. harzianum strain T28 may be an effective eco-friendly biocontrol tool for managing Pokkah boeng disease in sugarcane. This is the first report of the biocontrol potential of Trichoderma spp. against Fusarium proliferatum causing Pokkah boeng disease in sugarcane.</p>","PeriodicalId":23744,"journal":{"name":"World Journal of Microbiology and Biotechnology","volume":"8 1","pages":"139"},"PeriodicalIF":0.0,"publicationDate":"2022-06-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"84722323","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-06-16DOI: 10.1007/s11274-022-03311-7
A. K. Singh, R. Gupta, H. Purohit, A. Khardenavis
{"title":"Genomic characterization of denitrifying methylotrophic Pseudomonas aeruginosa strain AAK/M5 isolated from municipal solid waste landfill soil","authors":"A. K. Singh, R. Gupta, H. Purohit, A. Khardenavis","doi":"10.1007/s11274-022-03311-7","DOIUrl":"https://doi.org/10.1007/s11274-022-03311-7","url":null,"abstract":"","PeriodicalId":23744,"journal":{"name":"World Journal of Microbiology and Biotechnology","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-06-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"84355927","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-06-15DOI: 10.1007/s11274-022-03318-0
Anacleto Sosa, N. Girardi, L. Rosso, M. Etcheverry, M. A. Passone
{"title":"In vitro compatibility of Brassicaceae extracts with nematophagous fungi and their effects against Nacobbus celatus","authors":"Anacleto Sosa, N. Girardi, L. Rosso, M. Etcheverry, M. A. Passone","doi":"10.1007/s11274-022-03318-0","DOIUrl":"https://doi.org/10.1007/s11274-022-03318-0","url":null,"abstract":"","PeriodicalId":23744,"journal":{"name":"World Journal of Microbiology and Biotechnology","volume":"26 6 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-06-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82835136","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-06-14DOI: 10.1007/s11274-022-03317-1
Jingguo Xu, Hui Hu, Jingyu Chen, Yansong Xue, Bekhzod Kodirkhonov, B. Han
{"title":"Comparative study on inhibitory effects of ferulic acid and p-coumaric acid on Salmonella Enteritidis biofilm formation","authors":"Jingguo Xu, Hui Hu, Jingyu Chen, Yansong Xue, Bekhzod Kodirkhonov, B. Han","doi":"10.1007/s11274-022-03317-1","DOIUrl":"https://doi.org/10.1007/s11274-022-03317-1","url":null,"abstract":"","PeriodicalId":23744,"journal":{"name":"World Journal of Microbiology and Biotechnology","volume":"41 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-06-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"86884351","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-06-14DOI: 10.1007/s11274-022-03303-7
Yuandi Zhang, Fang Ding, Yi Shen, Wei Cheng, Yansong Xue, B. Han, Xiaoxue Chen
{"title":"Characteristics of the microbiota and metabolic profile of high-temperature Daqu with different grades","authors":"Yuandi Zhang, Fang Ding, Yi Shen, Wei Cheng, Yansong Xue, B. Han, Xiaoxue Chen","doi":"10.1007/s11274-022-03303-7","DOIUrl":"https://doi.org/10.1007/s11274-022-03303-7","url":null,"abstract":"","PeriodicalId":23744,"journal":{"name":"World Journal of Microbiology and Biotechnology","volume":"76 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-06-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"77283214","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2022-06-13DOI: 10.1007/s11274-022-03327-z
D. Verma, Vinod Kumar, T. Satyanarayana
{"title":"Genomic attributes of thermophilic and hyperthermophilic bacteria and archaea","authors":"D. Verma, Vinod Kumar, T. Satyanarayana","doi":"10.1007/s11274-022-03327-z","DOIUrl":"https://doi.org/10.1007/s11274-022-03327-z","url":null,"abstract":"","PeriodicalId":23744,"journal":{"name":"World Journal of Microbiology and Biotechnology","volume":"21 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"87191952","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}