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Mixed-valent Manganese Complex with a Schiff-base Having a Di-μ4-oxido-di-μ3-oxido-di-μ3-carboxylato-hexa-μ-carboxylato-bridged MnII2MnIII6 Core 具有Di-μ - oxide - Di-μ - oxide - Di-μ -carboxylato-hexa-μ-carboxylato桥接MnII2MnIII6核的希夫碱混价锰配合物
IF 0.2 Q4 CRYSTALLOGRAPHY Pub Date : 2022-02-10 DOI: 10.2116/xraystruct.38.33
M. Mikuriya, Yoshiki Koyama, Chinatsu Kamioka, R. Mitsuhashi, M. Tsuboi
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引用次数: 1
Synthesis and Crystal Structure of a Mononuclear Cobalt(III) Complex with 2-[(2-Hydroxymethylphenyl)iminomethyl]phenol and Dimethylaminopyridine 2-[(2-羟甲基苯基)亚甲基]苯酚-二甲氨基吡啶单核钴配合物的合成与晶体结构
IF 0.2 Q4 CRYSTALLOGRAPHY Pub Date : 2022-01-10 DOI: 10.2116/xraystruct.38.1
N. Sato, Ko Yoneda, Y. Yamada, Masayuki Koikawa
Single-molecule magnets (SMMs) are intensively discussed as high-density storage, quantum computing, or spintronic technology.1–3 We have reported the weak SMM ability of a tetranuclear Co complex, [Co4(L1-H)4Cl2(CH3OH)2], but found that the stability of the complex depends on the coordinating solvent molecules.4 To improve the stability, we are working on the synthesis of new Co complexes in which the coordination solvents are replaced with various monodentate ligands. While an attempt was made to prepare a tetranuclear Co complex coordinated with dmpa, we obtained single crystals of [Co(L1-H)(HL1-H)dmpa]·CH3CN (1). Here, we report on the synthesis and the crystal structure of 1 (Fig. 1). The ligand H2L1-H was obtained by a literature method.5 An acetonitrile solution (10 mL) containing bis(acetylacetonato) diaquacobalt(II) (0.182 g, 0.5 mmol), H2L1-H (0.113 g, 0.5 mmol), and triethylamine (0.055 g, 0.5 mmol) was stirred at ca. 80°C for 30 min. To the obtained solution was added 4-dimethylaminopyridine (0.122 g, 1.0 mmol) with stirring. The orange precipitate was filtered off, and the filtrate was allowed to stand at room temperature. Reddish brown crystals suitable for X-ray analysis were obtained after 3 days. Yield, 0.009 g (3.0%). Measurements were made on a Rigaku VariMax Saturn CCD 724+ diffractometer with graphite-monochromated Mo-Kα radiation at 113 K. An empirical analytical absorption correction was applied. The structure was solved by direct methods (SIR92) and expanded using Fourier techniques. The nonhydrogen atoms were refined anisotropically. The alcoholic hydrogen atom, H3A, was found from Fourier peaks. The other hydrogen atoms were located at the calculated positions and refined using the riding model. The final cycle of a full-matrix least-squares refinement on F2 using SHELXL-2016 was based on observed reflections and variable parameters and converged with unweighted and weighted agreement factors of R1 (0.0483) and wR2 (0.1226).6 Details of the X-ray structure determination are listed in Table 1. An ORTEP drawing of the title complex 1 is shown in Fig. 2, and selected bond lengths and angles are provided in Table 2. The crystal structure of 1 consists of a Co atom, dianionic (L1-H)2–, monoanionic (HL1-H)–, and neutral dmpa ligands. The first ligand, (L1-H)2–, is coordinated to Co1 as a tridentate ligand with mer-manner. This coordination mode is similar to that of Co(III) units in the previously reported [Co4(L1-H)4Cl2(CH3OH)2]. The second ligand, (HL1-H)–, is bound to Co(III) as a bidentate chelate by phenoxo oxygen and imino nitrogen atoms. Only the tridentate coordination mode of (HL1-H)–, such as [Co(HL1-H)2]NO3, has been reported so far. This is the first example of the structurally analyzed bidentate coordination mode of H2L1-H. The remaining coordination site is occupied by the dmpa. The coordination geometry around the central Co atom is an octahedral with mer-N3O3 coordination environment. The bond distances between
单分子磁体(SMMs)作为高密度存储、量子计算或自旋电子技术被广泛讨论。我们已经报道了四核Co配合物[Co4(L1-H)4Cl2(CH3OH)2]的弱SMM能力,但发现配合物的稳定性取决于配位溶剂分子为了提高稳定性,我们正在研究用各种单齿配体代替配位溶剂的新型钴配合物的合成。在尝试制备与dmpa配位的四核Co配合物时,我们得到了[Co(L1-H)(HL1-H)dmpa]·CH3CN(1)的单晶。在这里,我们报道了1的合成和晶体结构(图1)。通过文献法得到了配体H2L1-H取10 mL的乙腈溶液,其中含有二(乙酰丙酮)二水产化钡(II) (0.182 g, 0.5 mmol)、h2l - h (0.113 g, 0.5 mmol)和三乙胺(0.055 g, 0.5 mmol),在约80℃下搅拌30 min,在得到的溶液中加入4-二甲氨基吡啶(0.122 g, 1.0 mmol)并搅拌。过滤掉橙色沉淀物,滤液在室温下静置。3天后得到适合x射线分析的红棕色晶体。收率:0.009 g(3.0%)。测量是在Rigaku VariMax土星CCD 724+衍射仪上进行的,在113 K下使用石墨-单铬化Mo-Kα辐射。采用经验分析吸收校正。用直接法(SIR92)求解该结构,并用傅里叶技术展开。非氢原子是各向异性细化的。从傅里叶峰中发现醇性氢原子H3A。其他氢原子被定位在计算的位置,并使用骑乘模型进行细化。使用SHELXL-2016对F2进行全矩阵最小二乘精化的最终周期基于观测反射和可变参数,并收敛于未加权和加权一致因子R1(0.0483)和wR2 (0.1226)x射线结构测定的细节列于表1。标题配合物1的ORTEP图如图2所示,选择的键长和键角如表2所示。1的晶体结构由一个Co原子、二阴离子(L1-H)2 -、单阴离子(h1 - h) -和中性配体组成。第一个配体(L1-H)2 -与Co1配位为三叉戟配体。这种配位模式类似于先前报道的[Co4(L1-H)4Cl2(CH3OH)2]中Co(III)单元的配位模式。第二个配体(h_1 - h) -通过苯氧和亚氮原子与Co(III)作为双齿螯合物结合。(h1 - h) -的三叉戟配位模式,如[Co(h1 - h)2]NO3,目前仅有报道。这是对H2L1-H的双齿配位模式进行结构分析的第一个例子。其余的协调位置由dmpa占用。中心Co原子周围的配位几何是一个具有mer-N3O3配位环境的八面体。Co1与配位氧原子的键距为1.8803(16)~ 1.9083(16)Å,配位氮原子的键距为1.9352(19)~ 1.9705(19)Å。这些距离对于Co(III)配合物来说是常见的为了确定氧化态归属,对Co1.9,1进行了键价和(BVS)计算
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引用次数: 0
Crystal Structure of Dichloro{2-(quinolin-2-yl)-4H-benzo[d][1,3]oxazine}cobalt(II) 二氯{2-(喹啉-2-基)-4H-苯并[d][1,3]恶嗪}钴的晶体结构(II)
IF 0.2 Q4 CRYSTALLOGRAPHY Pub Date : 2022-01-10 DOI: 10.2116/xraystruct.38.13
Fumiya Kanegae, Ko Yoneda, Masayuki Koikawa
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引用次数: 0
Crystal Structure of a Hydrolyzed Product of the Cobalt(III) Complex with 1-(3,5-Dichlorosalicylideneamino)-3-amino-2-propanol 钴(III)与1-(3,5-二氯水杨酸氨基)-3-氨基-2-丙醇络合物水解产物的晶体结构
IF 0.2 Q4 CRYSTALLOGRAPHY Pub Date : 2022-01-10 DOI: 10.2116/xraystruct.38.9
M. Mikuriya, Nagisa Tsuchimoto, Yoshiki Koyama, R. Mitsuhashi, M. Tsuboi
Much interest has been attracted to the coordination chemistry of potential pentadentate Schiff-base ligands, 1,3-bis(salicylideneamino)-2-propanol (H3bsalpr) and its substituted derivatives, with two phenolato-oxygen, two imino-nitrogen, and one alcoholate-oxygen donor atoms, are of interest. In the crystals, these Schiff-base ligands have intramolecular hydrogen bonds between imino-nitrogen and phenolato-oxygen atoms and intermolecular hydrogen bonds between an alcohol-oxygen atom and a phenolato-oxygen atom of neighboring Schiff-base molecule.1–5 The reaction between these Schiff-base ligands and metal salts generates mononuclear copper(II),6 tetranuclear zinc(II)7 complexes with a tetradentate O, N, N, O-chelate, and dinuclear copper(II),8 nickel(II),9 manganese(III),10,11 and cobalt(III)12, and tetranuclear manganese(II,III)13,14 complexes with a tridentate O, N, O-chelate. Aiming at extending these systems, we decided to prepare a cobalt complex with 1,3-bis(3,5-dichlorosalicylideneamino)-2-propanol (H3bdcsalpr), which has not been reported so far. In this study, we performed a reaction between H3bdcsalpr and cobalt(II) chloride hexahydrate in the presence of triethylamine in acetonitrile, and determined the crystal structure of the isolated complex, which has been found to be a new mononuclear cobalt(III) complex with hydrolyzed Schiff-base ligands, 1-(3,5-dichlorosalicylideneamino)-3-amino-2-propanol (Hdcsalapr–), [Co(Hdcsalapr)2] Cl·2CH3CN·2H2O (1), as depicted in Fig. 1, is different from the expected dinuclear cobalt complexes that we prepared before.12 A Schiff-base ligand, H3bdcsalpr, was synthesized by a similar method to the previously reported one.5 1,3-Diamino-2propanol (0.703 g, 7.8 mmol) and 3,5-dichlorosalicylaldehyde (3.00 g, 15.7 mmol) were dissolved in methanol (70 cm3). The solution was refluxed for 3 h, and then left at room temperature. The resulting yellow precipitate was filtered off, washed with methanol, and dried under a vacuum. Yield, 3.16 g (93%). IR (KBr, cm–1): 3219 (ν(OH)), 3064 (ν(CH(phenyl)), 2951 (νasCH2), 2872 (νsCH2), 1626(νC=N). Single crystals of 1 were obtained as follows: H3bdcsalpr (42.5 mg, 0.1 mmol) was dissolved in acetonitrile (3 mL). To this solution, cobalt(II) chloride hexahydrate (24.0 mg, 0.1 mmol) and six drops of triethylamine were added. The resulting brown solution was filtered after standing for several days to remove a small amount of white precipitate, and then the filtrate was left at room temperature for a further several days to give reddish-brown crystals. Yield, 5.7 mg (7.8% based on the metal salt). Reflectance spectra: λmax 284, 422 (A1g→T2g), 550sh (A1g→T1g), 724 (A1g→T2g) nm. X-ray diffraction data were collected on a Bruker CCD X-ray diffractometer (SMART APEX) using graphite-monochromated Mo-Kα radiation. Crystal data and details concerning the data collection are given in Table 1. The structure was solved by an 2022 © The Japan Society for Analytical Chemistry
具有两个酚氧、两个亚氨基氮和一个醇化氧供体原子的潜在五齿希夫碱配体1,3-双(亚水杨基氨基)-2-丙醇(H3bsalpr)及其取代衍生物的配位化学引起了人们的极大兴趣。在晶体中,这些希夫碱配体在亚氨基氮和酚氧原子之间具有分子内氢键,在相邻希夫碱分子的醇氧原子和酚氧分子之间具有分子间氢键。1-5这些希夫基配体与金属盐之间的反应产生单核铜(II),6四核锌(II)7与四齿O,N,O-螯合物的配合物,双核铜(II),8镍(II)、9锰(III)、10,11和钴(III)12,以及四核锰(II,III)13,14与三齿O,N-螯合物的配合物。为了扩展这些体系,我们决定用1,3-二(3,5-二氯亚水杨基氨基)-2-丙醇(H3bdcsalpr)制备一种钴络合物,该络合物迄今尚未报道。在本研究中,我们在乙腈中的三乙胺存在下,在H3bdcsalpr和六水合氯化钴(II)之间进行了反应,并确定了分离的配合物的晶体结构,该配合物被发现是一种新的单核钴(III)配合物,具有水解的席夫碱配体1-(3,5-二氯亚水杨基氨基)-3-氨基-2-丙醇(Hdcsalapr–),[Co(Hdcsalapr)2]Cl·2CH3CN·2H2O(1),如图所示。1,与我们之前制备的预期双核钴配合物不同。12通过与先前报道的方法类似的方法合成了希夫碱配体H3bdcsalpr。将5 1,3-二氨基-2丙醇(0.703 g,7.8 mmol)和3,5-二氯水杨醛(3.00 g,15.7 mmol)溶解在甲醇(70 cm3)中。将溶液回流3小时,然后在室温下放置。滤出得到的黄色沉淀物,用甲醇洗涤,并在真空下干燥。产量,3.16克(93%)。IR(KBr,cm–1):3219(μ(OH)),3064(μ(CH(苯基)),2951(μasCH2),2872(μsCH2),1626(μC=N)。如下获得1的单晶:将H3bdcsalpr(42.5 mg,0.1 mmol)溶于乙腈(3 mL)中。向该溶液中加入氯化钴(II)六水合物(24.0mg,0.1mmol)和六滴三乙胺。静置几天后过滤得到的棕色溶液以除去少量白色沉淀物,然后将滤液在室温下再放置几天以得到红棕色晶体。产量,5.7mg(基于金属盐为7.8%)。反射光谱:λmax 284422(A1g→T2g),550sh(A1g→T1g),724(A1g→T2g)nm。使用石墨单色Mo-Kα辐射在Bruker CCD X射线衍射仪(SMART APEX)上收集X射线衍射数据。表1中给出了晶体数据和有关数据收集的详细信息。该结构由2022©日本分析化学学会解决
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引用次数: 1
Anionic Favipiravir in Salt-type Cocrystals with Monoethanolamine and Ethylenediamine 阴离子法匹拉韦与单乙醇胺和乙二胺盐型共晶
IF 0.2 Q4 CRYSTALLOGRAPHY Pub Date : 2022-01-10 DOI: 10.2116/xraystruct.38.15
Odil Choriev, J. Ashurov, A. Ibragimov, Sh. M. Turaboev, V. Sabirov
Favipiravir (FVR) is an antiviral medication used to treat influenza in Japan (Fig. 1). It is also being studied to treat a number of other viral infections. Like experimental antiviral drugs T-1105 and T-1106, it is a pyrazinecarboxamide derivative.1 It is, however, only indicated for novel influenza (strains that cause more severe disease), rather than seasonal influenza. The mechanism of its actions is thought to be related to the selective inhibition of viral RNA-dependent RNA polymerase.2 The possible tautomerism of FVR has been investigated computationally.3 It was found that the enol-like form was substantially more stable in aqueous solution than the keto-like form, meaning that FVR likely exists almost exclusively in the enol-like form in aqueous solution (Fig. 2). An enol form of FVR was found in the crystal structure of FVR.4 The crystal structure of FVR has been analyzed in silico research for structural analysis of FVR and its activity against COVID-19.5,6 It was found that four tautomeric structures could be considered to be ligands obtained by density functional theory (DFT) calculations. The crystal structures of the cocrystals of many organic compounds with neutral FVR are already known,6,7 but an anionic form of FVR similar to that studied in this work has not yet been known. This is for the first time obtained and crystallographic studied as an anionic form of FVR, which has been obtained using a basic co-former as monoethanolamine (MEA) and ethylendiamine (en). The given results can be used to describe the interaction of FVR with the amino acids of a protein molecule. The purpose of this paper is to study the effects of the salt formation of FVR with the basic molecules MEA and en on its geometric parameters and its conformation. Salts of FVR with MEA (1) and en (2) were prepared by a similar procedure: (1): the reaction of FVR (0.1 mM, 0.157 mg) and MEA (0.1 mM, 6.11 mg), and (2): the reaction of FVR (0.1 mM, 6.11 mg) and en (0.1 mM, 6.01 mg), which were dissolved in ethanol (10 mL). The reaction mixtures were stirred for 15 min at a temperature of ∼60°C. Both crystals were obtained by slow evaporation of the reaction solutions at the room temperature. The hydrogen atoms of the amino groups in both structures were located on a difference-Fourier map, but other hydrogen 2022 © The Japan Society for Analytical Chemistry
法维匹拉韦(FVR)是一种抗病毒药物,在日本用于治疗流感(图1)。它还被研究用于治疗其他一些病毒感染。与实验性抗病毒药物T-1105和T-1106一样,它是吡嗪甲酰胺衍生物。1然而,它只适用于新型流感(导致更严重疾病的毒株),而不是季节性流感。其作用机制被认为与选择性抑制病毒RNA依赖性RNA聚合酶有关。2已通过计算研究了FVR可能的互变异构。3发现烯醇样形式在水溶液中比酮样形式更稳定,这意味着FVR可能几乎完全以烯醇类形式存在于水溶液中(图2)。在FVR的晶体结构中发现了FVR的烯醇形式。4在计算机研究中对FVR的结晶结构进行了分析,以进行FVR的结构分析及其对新冠肺炎的活性。5,6发现四种互变异构体结构可以被认为是通过密度泛函理论(DFT)计算获得的配体。许多具有中性FVR的有机化合物的共晶的晶体结构是已知的,6,7,但与本工作中研究的FVR类似的阴离子形式的FVR还未知。这是第一次获得并作为FVR的阴离子形式进行晶体学研究,FVR是使用碱性共成型剂如单乙醇胺(MEA)和乙二胺(en)获得的。给出的结果可用于描述FVR与蛋白质分子的氨基酸的相互作用。本文的目的是研究FVR与碱性分子MEA和en形成盐对其几何参数和构象的影响。FVR与MEA(1)和en(2。将反应混合物在~60°C的温度下搅拌15分钟。这两种晶体都是通过在室温下缓慢蒸发反应溶液而获得的。两种结构中氨基的氢原子都位于差异傅立叶图上,但其他氢2022©日本分析化学学会
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引用次数: 0
Crystal Structure of 1,3-Bis(3,5-dibromosalicylideneamino)-2-propanol 1,3-双(3,5-二溴亚水杨基氨基)-2-丙醇的晶体结构
IF 0.2 Q4 CRYSTALLOGRAPHY Pub Date : 2022-01-10 DOI: 10.2116/xraystruct.38.3
M. Mikuriya, Nagisa Tsuchimoto, Yoshiki Koyama, R. Mitsuhashi, M. Tsuboi
Schiff-base molecules, 1,3-bis(salicylideneamino)-2-propanol (H3salpr), and their substituted derivatives, are potential pentadentate ligands with two phenolato-oxygen, two iminonitrogen, and one central alcoholate-oxygen donor atoms by deprotonation with coordination to metal atoms. It is known that these Schiff-base ligands form a mononuclear copper(II) complex as a tetradentate O, N, N, O-chelate,1 and dinuclear copper(II),2 nickel(II),3 manganese(III),4 and cobalt(III)5 complexes as tridentate O, N, O-chelates. Previously, we reported on the crystal structures of a monosubstituted Schiffbase ligand, 1,3-bis(5-nitrosalicylideneamino)-2-propanol (H3nsalpr) and a disubstituted Schiff-base ligand, 1,3-bis(5chloro-3-methoxysalicylideneamino)-2-propanol (H3cmsalpr). The former has one nitro group at the salicylideneamino ring, whereas the latter has one chloro group and one methoxy group at the salicylideneamino ring. In this study, we prepared 1,3-bis(3,5-dibromosalicylideneamino)-2-propanol (H3dbsalpr), which has two bromo groups at the salicylideneamino ring (Fig. 1), and determined the crystal structure of H3dbsalpr, which has not been elucidated so far. 1,3-Diamino-2-propanol (0.646 g, 7 mmol) and 3,5-dibromosalicylaldehyde (4.00 g, 14 mmol) were dissolved in methanol (50 cm3)–acetonitrile (10 cm3). The solution was refluxed for 3 h, and then left at room temperature. The resulting yellow precipitate was filtered off, washed with methanol, and dried under a vacuum. Yield, 3.98 g (91%). IR (KBr, cm–1): 3235 (ν(OH)), 3055 (ν(CH(phenyl)), 2925 (νasCH2), 2889 (νsCH2), 1632 (νC=N). X-ray quality crystals were grown by recrystallization from acetonitrile. X-ray diffraction data were collected on a Bruker CCD X-ray diffractometer (SMART APEX) using graphite-monochromated Mo-Kα radiation. Crystal data and details concerning the data collection are given in Table 1. The structure was solved by an intrinsic phasing method with SHELXT-2014, and refined by full-matrix least-squares methods with SHELXL-2018. The hydrogen atoms were inserted at their calculated positions, and fixed there with restraints. The hydrogen atoms at the imino groups were also inserted at the calculated positions because it was difficult to locate the hydrogen atoms from the D-Fourier maps including the phenolate oxygen areas. For thermal anisotropic displacement parameters (ADPs) of most of the carbon atoms, enhanced rigid bond restraints were applied. Crystallographic data have been deposited with Cambridge Crystallographic Data Centre (Deposit number CCDC2091176). Copies of the data can be obtained free of charge via http://www.ccdc.cam.ac.uk/conts/retrieving.html (or from the Cambridge Crystallographic Data Centre, 12, Union Road, Cambridge, CB2 1EZ, UK; Fax, +44 1223 336033; e-mail, deposit@ccdc.cam.ac.uk). In the crystal, the asymmetric unit consists of three independent 1,3-bis(3,5-dibromosalicylideneamino)-2-propanol, H3dbsalpr molecules, like in the case for 1,3-bis(salicy
希夫碱分子1,3-双(水杨基氨基)-2-丙醇(H3salpr)及其取代衍生物是潜在的五齿配体,具有两个酚氧、两个亚氮和一个中心醇氧供体原子,通过去质子作用与金属原子配位。已知这些希夫碱配体形成单核铜(II)配合物作为四齿O, N, N, O螯合物,1和双核铜(II),2镍(II),3锰(III),4和钴(III)5配合物作为三齿O, N, O螯合物。在此之前,我们报道了单取代席夫碱配体1,3-二(5-硝基水杨基氨基)-2-丙醇(H3nsalpr)和二取代席夫碱配体1,3-二(5氯-3-甲氧基水杨基氨基)-2-丙醇(H3cmsalpr)的晶体结构。前者在水杨基氨基环上有一个硝基,而后者在水杨基氨基环上有一个氯基和一个甲氧基。在本研究中,我们制备了在水杨基氨基环上有两个溴基团的1,3-二(3,5-二溴水杨基氨基)-2-丙醇(H3dbsalpr)(图1),并确定了H3dbsalpr的晶体结构,目前尚未被阐明。1,3-二氨基-2-丙醇(0.646 g, 7 mmol)和3,5-二溴水杨醛(4.00 g, 14 mmol)溶于甲醇(50 cm3) -乙腈(10 cm3)中。溶液回流3小时,然后在室温下放置。所得的黄色沉淀物被过滤掉,用甲醇洗涤,并在真空下干燥。产率3.98 g(91%)。红外(KBr, cm - 1): 3235(ν(哦),3055(ν(CH(苯)),2925(νasCH2), 2889(ν伊万),1632(νC = N)。用乙腈重结晶法生长出x射线质量的晶体。采用石墨-单铬化Mo-Kα辐射,在Bruker CCD x射线衍射仪(SMART APEX)上采集x射线衍射数据。晶体数据和有关数据收集的详细信息见表1。基于SHELXT-2014的内禀相位法求解该结构,基于SHELXL-2018的全矩阵最小二乘法对其进行细化。氢原子被插入到计算出的位置,并被约束固定在那里。由于难以从含酚氧区的d -傅立叶图中定位氢原子,因此亚胺基上的氢原子也被插入到计算位置。对于大多数碳原子的热各向异性位移参数(ADPs),采用了增强的刚性键约束。晶体学数据已存放在剑桥晶体学数据中心(存储号CCDC2091176)。数据副本可通过http://www.ccdc.cam.ac.uk/conts/retrieving.html免费获得(或从剑桥晶体学数据中心,12,Union Road, Cambridge, CB2 1EZ, UK;传真:+44 1223 336033;电子邮件deposit@ccdc.cam.ac.uk)。在晶体中,不对称单元由三个独立的1,3-二(3,5-二溴水杨基氨基)-2-丙醇H3dbsalpr分子组成,就像1,3-二(水杨基氨基)-2-丙醇一样(不对称单元中有四个独立的分子)用热椭球绘制的非对称单元如图2所示。选定的键距和角度在2022年给出©日本分析化学学会
{"title":"Crystal Structure of 1,3-Bis(3,5-dibromosalicylideneamino)-2-propanol","authors":"M. Mikuriya, Nagisa Tsuchimoto, Yoshiki Koyama, R. Mitsuhashi, M. Tsuboi","doi":"10.2116/xraystruct.38.3","DOIUrl":"https://doi.org/10.2116/xraystruct.38.3","url":null,"abstract":"Schiff-base molecules, 1,3-bis(salicylideneamino)-2-propanol (H3salpr), and their substituted derivatives, are potential pentadentate ligands with two phenolato-oxygen, two iminonitrogen, and one central alcoholate-oxygen donor atoms by deprotonation with coordination to metal atoms. It is known that these Schiff-base ligands form a mononuclear copper(II) complex as a tetradentate O, N, N, O-chelate,1 and dinuclear copper(II),2 nickel(II),3 manganese(III),4 and cobalt(III)5 complexes as tridentate O, N, O-chelates. Previously, we reported on the crystal structures of a monosubstituted Schiffbase ligand, 1,3-bis(5-nitrosalicylideneamino)-2-propanol (H3nsalpr) and a disubstituted Schiff-base ligand, 1,3-bis(5chloro-3-methoxysalicylideneamino)-2-propanol (H3cmsalpr). The former has one nitro group at the salicylideneamino ring, whereas the latter has one chloro group and one methoxy group at the salicylideneamino ring. In this study, we prepared 1,3-bis(3,5-dibromosalicylideneamino)-2-propanol (H3dbsalpr), which has two bromo groups at the salicylideneamino ring (Fig. 1), and determined the crystal structure of H3dbsalpr, which has not been elucidated so far. 1,3-Diamino-2-propanol (0.646 g, 7 mmol) and 3,5-dibromosalicylaldehyde (4.00 g, 14 mmol) were dissolved in methanol (50 cm3)–acetonitrile (10 cm3). The solution was refluxed for 3 h, and then left at room temperature. The resulting yellow precipitate was filtered off, washed with methanol, and dried under a vacuum. Yield, 3.98 g (91%). IR (KBr, cm–1): 3235 (ν(OH)), 3055 (ν(CH(phenyl)), 2925 (νasCH2), 2889 (νsCH2), 1632 (νC=N). X-ray quality crystals were grown by recrystallization from acetonitrile. X-ray diffraction data were collected on a Bruker CCD X-ray diffractometer (SMART APEX) using graphite-monochromated Mo-Kα radiation. Crystal data and details concerning the data collection are given in Table 1. The structure was solved by an intrinsic phasing method with SHELXT-2014, and refined by full-matrix least-squares methods with SHELXL-2018. The hydrogen atoms were inserted at their calculated positions, and fixed there with restraints. The hydrogen atoms at the imino groups were also inserted at the calculated positions because it was difficult to locate the hydrogen atoms from the D-Fourier maps including the phenolate oxygen areas. For thermal anisotropic displacement parameters (ADPs) of most of the carbon atoms, enhanced rigid bond restraints were applied. Crystallographic data have been deposited with Cambridge Crystallographic Data Centre (Deposit number CCDC2091176). Copies of the data can be obtained free of charge via http://www.ccdc.cam.ac.uk/conts/retrieving.html (or from the Cambridge Crystallographic Data Centre, 12, Union Road, Cambridge, CB2 1EZ, UK; Fax, +44 1223 336033; e-mail, deposit@ccdc.cam.ac.uk). In the crystal, the asymmetric unit consists of three independent 1,3-bis(3,5-dibromosalicylideneamino)-2-propanol, H3dbsalpr molecules, like in the case for 1,3-bis(salicy","PeriodicalId":23922,"journal":{"name":"X-ray Structure Analysis Online","volume":" ","pages":""},"PeriodicalIF":0.2,"publicationDate":"2022-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45839714","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Crystal Structure of Pyridin-4-ylmethyl 4-Nitrobenzoate, C13H10N2O4 吡啶-4-基甲基-4-硝基苯甲酸酯C13H10N2O4的晶体结构
IF 0.2 Q4 CRYSTALLOGRAPHY Pub Date : 2022-01-10 DOI: 10.2116/xraystruct.38.7
James T. P. Matshwele, Sebusi Odisitse, Ofentse Mazimba, F. Nareetsile, Lebogang G Julius, Dalitso Keitumetse
placed at geometrically calculated positions and included in the least-squares calculations using the riding-atom model. Their U iso values were fixed at 1.2 U eq of The structure of pyridin-4-ylmethyl 4-nitrobenzoate was determined by the single-crystal X-ray diffraction method. The compound crystallized in a monoclinic system, P 2 1 / n , and the unit cell parameters are, a = 9.981(2), b = 12.347(3), c = 10.161(3)Å, β = 101.450(9), Z = 4, V = 1227.3(5)Å 3 . The crystal structure was solved by intrinsic phasing and refined to final values of R 1 = 0.0451 and wR 2 = 0.1393.
放置在几何计算的位置,并包括在使用骑行原子模型的最小二乘计算中。用单晶X射线衍射法测定了吡啶-4-基甲基-4-硝基苯甲酸酯的结构。该化合物在单斜晶系中结晶,P 2 1/n,晶胞参数为:a=9.981(2),b=12.347(3),c=10.161(3)Å,β=101.450(9),Z=4,V=1227.3(5)Å3。晶体结构通过本征定相求解,并精确到R1=0.0451和wR2=0.1393的最终值。
{"title":"Crystal Structure of Pyridin-4-ylmethyl 4-Nitrobenzoate, C13H10N2O4","authors":"James T. P. Matshwele, Sebusi Odisitse, Ofentse Mazimba, F. Nareetsile, Lebogang G Julius, Dalitso Keitumetse","doi":"10.2116/xraystruct.38.7","DOIUrl":"https://doi.org/10.2116/xraystruct.38.7","url":null,"abstract":"placed at geometrically calculated positions and included in the least-squares calculations using the riding-atom model. Their U iso values were fixed at 1.2 U eq of The structure of pyridin-4-ylmethyl 4-nitrobenzoate was determined by the single-crystal X-ray diffraction method. The compound crystallized in a monoclinic system, P 2 1 / n , and the unit cell parameters are, a = 9.981(2), b = 12.347(3), c = 10.161(3)Å, β = 101.450(9), Z = 4, V = 1227.3(5)Å 3 . The crystal structure was solved by intrinsic phasing and refined to final values of R 1 = 0.0451 and wR 2 = 0.1393.","PeriodicalId":23922,"journal":{"name":"X-ray Structure Analysis Online","volume":" ","pages":""},"PeriodicalIF":0.2,"publicationDate":"2022-01-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46762942","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Synthesis and Crystal Structure of Bis{2-[(2-hydroxymethylphenyl)iminomethyl]-4-nitrophenolato}nickel(II) Monoacetonitrile 双{2-[(2-羟基甲基苯基)亚氨基甲基]-4-硝基苯氧基}镍(II)单乙腈的合成与晶体结构
IF 0.2 Q4 CRYSTALLOGRAPHY Pub Date : 2021-12-10 DOI: 10.2116/xraystruct.37.85
Yuka Mineyama, Ko Yoneda, Y. Yamada, Masayuki Koikawa
correction was applied. The structure was solved by direct methods (SIR92) and expanded using Fourier techniques. The non-2021 The title compound, [Ni(HL1–NO 2 ) 2 ]·CH 3 CN, [H 2 L1–NO 2 = 2-[2-(hydroxymethylphenyl)iminomethyl]-4-nitrophenol], was synthesized and characterized by single-crystal X-ray analysis. The compound crystallizes in the triclinic space group P 1 with cell parameters a = 10.556(2)Å, b = 11.779(3)Å, c = 12.247(3)Å, α = 86.412(10) ° , β = 71.135(8) ° , γ = 73.009(8) ° , V = 1377.2(5)Å 3 , D calcd = 1.549 g/cm 3 , Z = 2. The R 1 [ I > 2 σ ( I )] and wR 2 (all data) values are 0.0362 and 0.1024, respectively, for all 5989 independent reflections. The tridentate ligands coordinate to the nickel atom as a mer -manner.
进行了校正。用直接法(SIR92)求解该结构,并用傅里叶技术展开。合成了非2021标题化合物[Ni(h1 - no 2) 2]·ch3 CN, [h2 L1-NO 2 = 2-[2-(羟甲基苯基)亚甲基]-4-硝基苯酚],并用单晶x射线分析对其进行了表征。晶胞参数为a = 10.556(2)Å, b = 11.779(3)Å, c = 12.247(3)Å, α = 86.412(10)°,β = 71.135(8)°,γ = 73.009(8)°,V = 1377.2(5)Å 3, D calcd = 1.549 g/cm 3, Z = 2。5989个独立反射的R 1 [I > 2 σ (I)]和wR 2(所有数据)值分别为0.0362和0.1024。三叉戟配体与镍原子以聚合物的方式配位。
{"title":"Synthesis and Crystal Structure of Bis{2-[(2-hydroxymethylphenyl)iminomethyl]-4-nitrophenolato}nickel(II) Monoacetonitrile","authors":"Yuka Mineyama, Ko Yoneda, Y. Yamada, Masayuki Koikawa","doi":"10.2116/xraystruct.37.85","DOIUrl":"https://doi.org/10.2116/xraystruct.37.85","url":null,"abstract":"correction was applied. The structure was solved by direct methods (SIR92) and expanded using Fourier techniques. The non-2021 The title compound, [Ni(HL1–NO 2 ) 2 ]·CH 3 CN, [H 2 L1–NO 2 = 2-[2-(hydroxymethylphenyl)iminomethyl]-4-nitrophenol], was synthesized and characterized by single-crystal X-ray analysis. The compound crystallizes in the triclinic space group P 1 with cell parameters a = 10.556(2)Å, b = 11.779(3)Å, c = 12.247(3)Å, α = 86.412(10) ° , β = 71.135(8) ° , γ = 73.009(8) ° , V = 1377.2(5)Å 3 , D calcd = 1.549 g/cm 3 , Z = 2. The R 1 [ I > 2 σ ( I )] and wR 2 (all data) values are 0.0362 and 0.1024, respectively, for all 5989 independent reflections. The tridentate ligands coordinate to the nickel atom as a mer -manner.","PeriodicalId":23922,"journal":{"name":"X-ray Structure Analysis Online","volume":" ","pages":""},"PeriodicalIF":0.2,"publicationDate":"2021-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42340974","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
μ-Phenolato-μ-chlorido-bridged Dinuclear Manganese(II) Complex with a Dinucleating Schiff-base Ligand Having Imidazolyl Groups 具有咪唑基席夫碱双核配体的μ-酚-μ-氯桥接双核锰配合物
IF 0.2 Q4 CRYSTALLOGRAPHY Pub Date : 2021-12-10 DOI: 10.2116/xraystruct.37.81
M. Mikuriya, Hitomi Yamada, K. Morita, Ai Shibutani, Eiichi Nagayama, Shinya Minato, D. Yoshioka, M. Tsuboi
in A μ -phenolato- μ -chlorido-bridged dinuclear manganese(II) complex with 2,6-bis( N -(4-imidazolylethyl)iminomethyl)-4-methylphenol (Hbimmp), [Mn 2 (bimmp)( μ -Cl)Cl 2 ], was isolated. The crystal structure was determined by a single-crystal X-ray diffraction method at 293 K. The complex crystallizes in the orthorhombic space group F dd2 with a = 40.557(4), b = 9.2353(9), c = 12.5138(2)Å, V = 4687.1(8)Å 3 , D calcd = 1.603 g/cm 3 , Z = 8. The R 1 [ I > 2 σ ( I )] and wR 2 (all data) values are 0.0309 and 0.0826, respectively, for all 2683 independent reflections. The two manganese(II) atoms are bridged by a phenolato-oxygen of bimmp – and a μ -chlorido atom, where each manganese(II) atom is further coordinated by imino- and imidazolyl-nitrogen atoms of bimmp – and chlorido atoms to form a square-pyramidal geometry. (Received
从A μ -酚- μ -氯-桥接双核锰(II)与2,6-双(N -(4-咪唑乙基)亚甲基)-4-甲基苯酚(Hbimmp)配合物中分离得到[Mn 2 (bimmp)(μ -Cl)Cl 2]。在293 K下用单晶x射线衍射法测定了晶体结构。配合物在正交空间群F dd2中结晶,a = 40.557(4), b = 9.2353(9), c = 12.5138(2)Å, V = 4687.1(8)Å 3, D calcd = 1.603 g/cm 3, Z = 8。所有2683个独立反射的R 1 [I > 2 σ (I)]和wR 2(所有数据)值分别为0.0309和0.0826。两个锰(II)原子由一个苯基氧原子和一个μ -氯原子桥接,其中每个锰(II)原子进一步由苯基氧原子和氯原子的亚氮原子和咪唑氮原子配位,形成方形金字塔几何结构。(收到
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引用次数: 0
Crystal Structure of Bis{1,3-bis[bis(pyridin-2-ylmethyl)amino]propan-​2-olato-dizinc(II)}orthophosphate Tris(perchlorate) Octahydrate, [(Phos-tag)2-PO43−][ClO4−]3·8H2O [(Phos-tag)2-PO43−][ClO4−]3·8H2O的晶体结构
IF 0.2 Q4 CRYSTALLOGRAPHY Pub Date : 2021-12-10 DOI: 10.2116/xraystruct.37.87
Yoshimi Ichimaru, Koichi Kato, Wanchun Jin, K. Sugiura, Emiko Kinoshita-Kikuta, E. Kinoshita, H. Kurosaki, T. Koike
The crystal structure of bis{1,3-bis[bis(pyridin-2-ylmethyl)amino]propan-2-olato-dizinc(II)}orthophosphate tris(perchlorate) octahydrate, [(Phos-tag) 2 -PO 43– ][ClO 4– ] 3 ·8H 2 O was determined by the single-crystal X-ray diffraction method at 93.15 K. The titled complex crystallized in the monoclinic space group C 2/c and Z = 4 with a = 16.8423(2), b = 21.3554(2), c = 19.9942(2)Å, β = 106.8690(10) ° , and V = 6881.95(13)Å 3 . The R 1 [ I > 2 σ ( I )] and wR 2 (all data) values were 0.0447 and 0.1142, respectively, for all 6253 independent reflections. In the crystal structure, each zinc(II) ion is coordinated with two pyridyl amines, a tertiary amine, an alkoxide oxygen, and a phosphate oxygen to form a trigonal bipyramidal geometry. The orthophosphate trianion connects two dinuclear zinc(II) complex (Phos-tag) in a μ 4 η 4 bridge mode.
用单晶x射线衍射法在93.15 K下测定了双{1,3-双[双(吡啶-2-甲基)氨基]丙-2-奥拉托-二锌(II)}正磷酸盐三(高氯酸盐)八水合物[(Phos-tag) 2- po 43 -][ClO 4 -] 3·8H 2o的晶体结构。在单斜空间群C 2/ C和Z = 4中结晶,a = 16.8423(2), b = 21.3554(2), C = 19.9942(2)Å, β = 106.8690(10)°,V = 6881.95(13)Å 3。6253个独立反射的R 1 [I > 2 σ (I)]和wR 2(所有数据)值分别为0.0447和0.1142。在晶体结构中,每个锌(II)离子与两个吡啶胺、一个叔胺、一个醇氧和一个磷酸氧配位,形成三角双锥体几何结构。正磷酸盐三阴离子以μ 4 η 4桥模式连接两个双核锌(II)配合物(Phos-tag)。
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引用次数: 0
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X-ray Structure Analysis Online
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