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Temporal Changes in Demography and Genetic Diversity of Oriental Storks at the Stage of Long-Term Captive Propagation and Reintroduction Initiation. 东方鹳长期圈养繁殖和放归起始阶段人口统计学和遗传多样性的时间变化
IF 0.9 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-08-01 DOI: 10.2108/zs220076
Hyun-Ju Yoon, Mu-Yeong Lee, Hye-Sook Jeon, Junghwa An, Jongmin Yoon

Captive propagation and reintroduction are the major steps in the ex-situ conservation of locally extirpated endangered species in a historical region. In a species restoration project conducted in South Korea, we examined temporal changes in demographics and genetic diversity of oriental storks (Ciconia boyciana). Demographic and genetic data from 1996-2018 were analyzed for 80% of all captive and recently reintroduced individuals. Founder establishment and pair formation induced increases in population size and genetic diversity during the early stage of captive propagation. The degree of genetic diversity was found to become saturated and stable with long-term captive propagation. However, this might be a concern for future genetic diversity of both captive and reintroduced populations simultaneously due to the extraction of captive populations at the early stage of reintroduction. Our findings suggest that periodic evaluation of genetic diversity and selection for releasing individuals, using effective genetic markers, would assist in balancing the genetic diversity of the captive and reintroduced oriental storks at the early stage of reintroduction.

圈养繁殖和放归是历史地区局部灭绝濒危物种迁地保护的主要步骤。在韩国进行的物种恢复项目中,我们研究了东方鹳(Ciconia boyciana)人口统计学和遗传多样性的时间变化。对所有圈养和最近重新引入的80%的个体进行了1996-2018年的人口统计和遗传数据分析。在圈养繁殖早期,方正子的建立和对的形成导致了种群大小和遗传多样性的增加。长期圈养繁殖使遗传多样性趋于饱和和稳定。然而,由于圈养种群在重新引入的早期阶段被提取,这可能会对圈养种群和重新引入种群的未来遗传多样性造成影响。研究结果表明,利用有效的遗传标记对放归个体进行遗传多样性评估和选择,有助于在放归早期平衡圈养和放归东方鹳的遗传多样性。
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引用次数: 0
Sources of Polycyclic Aromatic Hydrocarbons in Fecal Pellets of a Marphysa Species (Annelida: Eunicidae) in the Yoro Tidal Flat, Japan. 日本Yoro潮滩一种Marphysa物种(环节动物纲:Eunicidae)粪便颗粒中多环芳烃的来源。
IF 0.9 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-08-01 DOI: 10.2108/zs230020
Yuichiro Osaka, Satoshi Abe, Hirokazu Abe, Masaatsu Tanaka, Mayu Onozato, Kenji Okoshi, Atsuko Nishigaki

The fecal pellets of Marphysa sp. E sensu Abe et al. (2019) (Annelida, Eunicidae) living in the Yoro tidal flat (Ichihara, Chiba, Japan) contain high levels of polycyclic aromatic hydrocarbons (PAHs), and the concentrations rapidly decrease over time. To investigate the origin of the high-concentration PAHs in the fecal pellets and food sources of the worms, the PAH concentrations, carbon and nitrogen stable isotope ratios (δ13C and δ15N), total organic carbon, and total nitrogen for two types of sediment (sands and reduced muds), fecal pellets, and the body of the worms were determined. The PAH concentrations and chemical properties of the fecal pellets were similar to those of the reduced muds (20-30 cm sediment depth). The δ13C, δ15N, and C/N values of reduced muds were the same as the typical values of terrestrial C3 plants, suggesting that reduced muds were derived from terrestrial plants. These data indicated that the worms selectively take up reduced muds containing high levels of PAHs. The δ13C and δ15N values of the worm bodies indicated that the worms did not use the organic carbon derived from terrestrial C3 plants as primary nutrition. Taking into consideration their selective uptake of reduced muds, excretion, and subsequent rapid decrease of PAHs in the fecal pellets, the worms could contribute to the remediation of chemical pollutants in the tidal flat sediments.

生活在Yoro潮坪(日本千叶市一原市)的Marphysa sp.Esensu-Abe等人(2019)(环节动物纲,Eunicidae)的粪便颗粒含有高水平的多环芳烃(PAHs),并且随着时间的推移,其浓度迅速下降。为了研究粪便颗粒中高浓度PAHs的来源和蠕虫的食物来源,测定了两种沉积物(沙和还原泥)、粪便颗粒和蠕虫身体的PAHs浓度、碳和氮稳定同位素比率(δ13C和δ15N)、总有机碳和总氮。粪便颗粒的PAH浓度和化学性质与减少的泥浆(20-30厘米沉积物深度)相似。还原泥的δ13C、δ15N和C/N值与陆地C3植物的典型值相同,表明还原泥来源于陆地植物。这些数据表明,蠕虫有选择地吸收含有高水平多环芳烃的减少的泥浆。虫体的δ13C和δ15N值表明,虫体不以陆生C3植物的有机碳为主要营养成分。考虑到它们对减少的泥浆的选择性吸收、排泄以及随后粪便颗粒中PAHs的快速减少,这些蠕虫可能有助于修复滩涂沉积物中的化学污染物。
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引用次数: 0
Molecular Phylogeny and Taxonomy of the Coral Genus Cyphastrea (Cnidaria, Scleractinia, Merulinidae) in Japan, With the First Records of Two Species. 日本Cyphastrea珊瑚属(刺胞目,硬核科,细壳科)的分子系统发育与分类,并附两种首次记录。
IF 0.9 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-08-01 DOI: 10.2108/zs230009
Thanapat Chukaew, Naoko Isomura, Takuma Mezaki, Hisashi Matsumoto, Yuko F Kitano, Yoko Nozawa, Hiroyuki Tachikawa, Hironobu Fukami

The scleractinian coral genus Cyphastrea is widely distributed in the Indo-Pacific region and is common from the subtropical to the warm-temperate regions in Japan. Three new species in this genus have recently been reported from south-eastern Australia or the Red Sea. However, taxonomic and species diversity have been little studied so far in Japan. In this study, we analyzed 112 specimens of Cyphastrea collected from the subtropical to the warm-temperate regions in Japan to clarify the species diversity in the country. This analysis was based on skeletal morphological and molecular analyses using three genetic markers of the nuclear 28S rDNA, histone H3 gene, and the mitochondrial noncoding intergenic region between COI and tRNAmet. The molecular phylogenetic trees showed that our specimens are separated mainly into four clades. Considering the morphological data with the molecular phylogenetic relationships, we confirmed a total of nine species, including two species, C. magna and C. salae, recorded for the first time in Japan. Although eight out of nine species were genetically included within Cyphastrea, one species, C. agassizi, was genetically distant from all other species and was closely related to the genus Leptastrea, suggesting the return of this species to the genus to which it was originally ascribed. Two newly recorded species were reciprocally monophyletic, while the other six species (excluding C. agassizi) clustered in two clades without forming species-specific lineages, including three polyphyletic species. Thus, the species boundary between species in Cyphastrea remains unclear in most species using these three sequenced loci.

石珊瑚属Cyphastrea广泛分布于印度-太平洋地区,在日本从亚热带到暖温带地区都很常见。最近在澳大利亚东南部和红海发现了这一属的三个新种。然而,到目前为止,日本的分类和物种多样性研究很少。本研究对日本亚热带至暖温带地区收集的112份麻蝇标本进行了分析,以阐明该国的物种多样性。该分析基于骨骼形态学和分子分析,使用核28S rDNA、组蛋白H3基因和线粒体COI和tRNAmet之间的非编码基因间区三个遗传标记。分子系统发育树显示,我们的标本主要分为四个支系。结合形态学资料和分子系统发育关系,确定了在日本首次记录的C. magna和C. salae共9种。虽然9个物种中有8个在遗传上属于Cyphastrea,但有一个物种C. agassizi在遗传上与所有其他物种都很远,并且与Leptastrea属有密切关系,这表明该物种回到了它最初归属的属。2个新记录种是相互单系的,其余6种(不包括C. agassizi)聚集在两个分支中,没有形成种特异性的谱系,包括3个多系种。因此,在大多数使用这三个测序位点的物种中,Cyphastrea物种之间的物种边界仍然不清楚。
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引用次数: 0
To Mob or Not to Mob: Habitat and Time of Day Influence in Mobbing Behavior in the Azure-Winged Magpie (Cyanopica cookii). 群居或不群居:生境和时间对蓝翅喜鹊(Cyanopica cookii)群居行为的影响。
IF 0.9 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-08-01 DOI: 10.2108/zs230004
M Carmen Hernández, Rafael Ayala Lara, Alberto J Redondo

While mobbing, individuals utter distinctive calls and perform visual threatening displays. Like any other antipredatory strategies, it involves some costs (time, energy, injuries, and even death). Therefore, mobbing would be expected to vary depending on the perceived magnitude of the predation risk. Moreover, harassment behavior can also serve as a demonstration of social status and to teach juveniles to recognize predators and related behaviors. Therefore, mobbing could also persist even when predation risk is particularly low. To test our hypotheses, we used tawny owl playbacks and a taxidermy mount to elicit the mobbing response in azure-winged magpies throughout the daylight period. To classify mobbing intensity, we created five categories depending on the proximity to the owl model at which the mobbing was performed. The results revealed that mobbing behavior in azure-winged magpies was more intense where predation risk was higher: in the most suitable habitat for the tawny owl, the forest, although considerable levels of mobbing were found in the dehesa and the ecotone, which indicate that mobbing has different purposes. However, we did not find statistically significant differences in mobbing intensity depending on the time of the day. We could not show a daily adjustment of antipredator response, but magpies modulated mobbing depending on the perceived risk linked to the habitat.

在群居时,个体发出独特的叫声,并表现出视觉威胁。像任何其他反掠食策略一样,它需要付出一些代价(时间、精力、伤害甚至死亡)。因此,围捕行为的变化取决于被捕食风险的感知程度。此外,骚扰行为还可以作为一种社会地位的展示,并教会青少年识别捕食者和相关行为。因此,即使在被捕食的风险特别低的情况下,蜂群也可能持续存在。为了验证我们的假设,我们使用了茶色猫头鹰的回放和标本坐骑来诱导蓝翅喜鹊在白天的蜂拥反应。为了对群集强度进行分类,我们根据与进行群集的猫头鹰模型的接近程度创建了五个类别。结果表明,在捕食风险较高的地方,蓝翅喜鹊的围捕行为更为激烈:在最适合黄褐色猫头鹰的栖息地,森林,尽管在dehesa和ecotone中发现了相当程度的围捕行为,这表明围捕有不同的目的。然而,我们并没有发现一天中不同时间的人群聚集强度有统计学上的显著差异。我们无法显示出对反捕食者反应的每日调整,但喜鹊根据与栖息地相关的感知风险调节了蜂群。
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引用次数: 0
Populations of the Intertidal Crab Macrophthalmus banzai are Not Grouped by Latitude: Taiwan Population is Genetically Closer to the Populations in the Japanese Mainland Than the Ryukyu Islands. 潮间带巨眼蟹种群不按纬度划分:台湾种群与日本大陆种群的亲缘关系比与琉球群岛的亲缘关系更近。
IF 0.9 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-08-01 DOI: 10.2108/zs220117
Genki Kobayashi, Hirokazu Abe, Masahiro Suzuki, Kenji Okoshi, Hsing-Juh Lin, Tung-Yun Chen, Waka Sato-Okoshi

Macrophthalmus banzai is an intertidal crab species of Macrophthalmidae inhabiting muddy tidal flats in the northwestern Pacific. A previous study on the population genetic structure of Japanese M. banzai based on the mitochondrial COI gene sequences revealed the presence of two genetically distinguished groups, i.e., the northern group (Honshu, Shikoku, and Kyushu Islands) and the southern group (the Ryukyu Islands). In the present study, we newly determined the COI gene sequences of M. banzai collected from Taiwan and conducted population genetic analyses of these sequences together with Japanese sequences obtained from GenBank to reveal the genetic relationship of this species between Japan and Taiwan. The SAMOVA and pairwise ΦST analysis showed that the Taiwan population is more closely related to the northern group than the southern group. This indicates that the populations of M. banzai are not genetically differentiated by latitude but probably by the pathway of the Kuroshio Current, resulting in the isolation of the population in the Ryukyu Islands. Such a pattern is consistent with the population genetic structure of the fiddler crab Tubuca arcuata shown by a previous study, whereas the pattern differs from those of other intertidal invertebrates. The difference in the larval durations may have influenced the difference in population genetic structures among species. The present study provides a further case of the genetic structure of intertidal species that are not simply regulated by geographic distances.

斑仔巨眼蟹是潮间带巨眼蟹科的一种,栖息在西北太平洋泥泞的滩涂上。先前一项基于线粒体COI基因序列对日本M.banzai种群遗传结构的研究揭示了两个遗传上可区分的群体的存在,即北方群体(本州、四国和九州群岛)和南方群体(琉球群岛)。在本研究中,我们新确定了从台湾采集的斑仔的COI基因序列,并将这些序列与从GenBank获得的日本序列一起进行了群体遗传分析,以揭示该物种在日本和台湾之间的遗传关系。SAMOVA和成对ΦST分析表明,台湾人口与北方群体的关系比与南方群体的关系更密切。这表明斑仔的种群在遗传上不受纬度的影响,可能受黑潮路径的影响,导致琉球群岛种群的孤立。这样的模式与之前的一项研究显示的弓形杜布蟹的种群遗传结构一致,而这种模式与其他潮间带无脊椎动物不同。幼虫持续时间的差异可能影响了物种间种群遗传结构的差异。本研究提供了潮间带物种遗传结构的另一个例子,这些物种不仅仅受地理距离的调节。
{"title":"Populations of the Intertidal Crab <i>Macrophthalmus banzai</i> are Not Grouped by Latitude: Taiwan Population is Genetically Closer to the Populations in the Japanese Mainland Than the Ryukyu Islands.","authors":"Genki Kobayashi, Hirokazu Abe, Masahiro Suzuki, Kenji Okoshi, Hsing-Juh Lin, Tung-Yun Chen, Waka Sato-Okoshi","doi":"10.2108/zs220117","DOIUrl":"10.2108/zs220117","url":null,"abstract":"<p><p><i>Macrophthalmus banzai</i> is an intertidal crab species of Macrophthalmidae inhabiting muddy tidal flats in the northwestern Pacific. A previous study on the population genetic structure of Japanese <i>M</i>. <i>banzai</i> based on the mitochondrial COI gene sequences revealed the presence of two genetically distinguished groups, i.e., the northern group (Honshu, Shikoku, and Kyushu Islands) and the southern group (the Ryukyu Islands). In the present study, we newly determined the COI gene sequences of <i>M</i>. <i>banzai</i> collected from Taiwan and conducted population genetic analyses of these sequences together with Japanese sequences obtained from GenBank to reveal the genetic relationship of this species between Japan and Taiwan. The SAMOVA and pairwise ΦST analysis showed that the Taiwan population is more closely related to the northern group than the southern group. This indicates that the populations of <i>M</i>. <i>banzai</i> are not genetically differentiated by latitude but probably by the pathway of the Kuroshio Current, resulting in the isolation of the population in the Ryukyu Islands. Such a pattern is consistent with the population genetic structure of the fiddler crab <i>Tubuca arcuata</i> shown by a previous study, whereas the pattern differs from those of other intertidal invertebrates. The difference in the larval durations may have influenced the difference in population genetic structures among species. The present study provides a further case of the genetic structure of intertidal species that are not simply regulated by geographic distances.</p>","PeriodicalId":24040,"journal":{"name":"Zoological Science","volume":null,"pages":null},"PeriodicalIF":0.9,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10274220","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Contrasting Size Distributions among the Wing Spots of a Pierid Butterfly Suggest Different Selective Histories. 蝴蝶翅斑大小分布的对比表明不同的选择历史。
IF 0.9 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-06-01 DOI: 10.2108/zs220087
Yoshiaki Obara, Ronald Rutowski

Males of the small cabbage butterfly Pieris rapae crucivora have two dark or melanic spots in the central white area of each dorsal forewing, an anterior spot (aS) and a posterior spot (pS). We used characteristics of the size distributions of these spots to infer how selection has acted on them during their evolution. Our study reveals that the aS size distribution is normal while that of pS is very right-skewed. Moreover, aS size is larger and less variable than pS size. These results suggest that the aS has been under stabilizing selection while the pS has not. The context in which this selection is acting is not yet clear, nor is it clear why pS persists as a wing marking.

小菜花蝴蝶(Pieris rapae crucivora)的雄性在每只背前翅的中央白色区域有两个黑色或黑色斑点,一个是前斑(aS),一个是后斑(pS)。我们利用这些斑点的大小分布特征来推断在它们的进化过程中选择是如何作用于它们的。我们的研究表明,aS的大小分布是正态的,而pS的大小分布是非常右偏的。此外,aS尺寸比pS尺寸更大,变化更小。这些结果表明,大豆处于稳定选择状态,而大豆处于非稳定选择状态。这种选择的背景尚不清楚,也不清楚为什么p继续作为一个边路标记。
{"title":"Contrasting Size Distributions among the Wing Spots of a Pierid Butterfly Suggest Different Selective Histories.","authors":"Yoshiaki Obara,&nbsp;Ronald Rutowski","doi":"10.2108/zs220087","DOIUrl":"https://doi.org/10.2108/zs220087","url":null,"abstract":"<p><p>Males of the small cabbage butterfly <i>Pieris rapae crucivora</i> have two dark or melanic spots in the central white area of each dorsal forewing, an anterior spot (aS) and a posterior spot (pS). We used characteristics of the size distributions of these spots to infer how selection has acted on them during their evolution. Our study reveals that the aS size distribution is normal while that of pS is very right-skewed. Moreover, aS size is larger and less variable than pS size. These results suggest that the aS has been under stabilizing selection while the pS has not. The context in which this selection is acting is not yet clear, nor is it clear why pS persists as a wing marking.</p>","PeriodicalId":24040,"journal":{"name":"Zoological Science","volume":null,"pages":null},"PeriodicalIF":0.9,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9561949","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phototaxis in Two Shallow-Water Zeuxo Species (Crustacea: Tanaidacea). 两种浅水斑马鱼的趋光性(甲壳纲:斑马鱼科)。
IF 0.9 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-06-01 DOI: 10.2108/zs220118
Nobuya Okamoto, Keiichi Kakui

Different crustacean species can differ in their response to light. In Tanaidacea, a small group of aquatic, benthic crustaceans, previous studies suggested that several species may be positively phototactic based on their attraction to nocturnal light traps, but no experimental investigations of phototaxis had been conducted on this group. Here we show experimentally that two species in the genus Zeuxo are phototactic but exhibit opposite reactions to light; Zeuxo ezoensis, which inhabits the blades and stipes of seaweeds, was positively phototactic, whereas Zeuxo molybi, which inhabits muddy sediments overlying bedrock, was negatively phototactic. This differential response may reflect differences in photoenvironment between these species' microhabitats.

不同的甲壳类动物对光的反应不同。在Tanaidacea(一种水生底栖甲壳类动物)中,先前的研究表明,一些物种可能基于它们对夜间光线陷阱的吸引力而具有积极的趋光性,但尚未对该群体进行趋光性的实验研究。在这里,我们通过实验证明,Zeuxo属中的两个物种具有光致性,但对光表现出相反的反应;栖息在海藻叶片和茎尖上的Zeuxo ezoensis具有正向光敏性,而栖息在基岩上的泥质沉积物中的Zeuxo molybi则具有负向光敏性。这种差异反应可能反映了这些物种微生境的光环境差异。
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引用次数: 0
A New Species of Bisexual Milnesium (Eutardigrada: Apochela) Having Aberrant Claws from Innhovde, Dronning Maud Land, East Antarctica. 东南极洲因霍夫德、Dronning Maud地双性恋千禧年目一新种(真水目:足足目)有异常爪。
IF 0.9 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-06-01 DOI: 10.2108/zs220085
Atsushi C Suzuki, Kenta Sugiura, Megumu Tsujimoto, Ryosuke Nakai, Sandra J McInnes, Hiroshi Kagoshima, Satoshi Imura

There have been several records in the last 60 years for East Antarctica for Milnesium tardigradum Doyère, 1840 sensu lato, now considered a species complex. During the 56th Japanese Antarctic Research Expedition summer operation (2014-2015), a new tardigrade species in the genus Milnesium Doyère, 1840 was found in an ice-free Innhovde area along Lützow-Holm Bay, Dronning Maud Land, East Antarctica. The new species has aberrant claws with four to seven points on each secondary claw branch, which distinguishes it from other Milnesium species. A male specimen was found in the population and evidence showed that an isolated adult female moulted twice without oviposition. This strongly suggested bisexual reproduction for this population. The new species, Milnesium rastrum sp. nov., is described with its phylogenetic position and a discussion on the reproductive strategies for the harsh environments.

在过去的60年里,在东南极洲有一些关于千年缓步虫(milium tardigradum doy, 1840年)的记录,现在被认为是一个物种复合体。在第56次日本南极科考夏季行动(2014-2015)期间,在南极洲东部Dronning Maud Land l zow- holm湾的无冰inhovde地区发现了一种新的Milnesium doy属缓步动物,1840。这个新物种有异常的爪子,每个次级爪子分支上有4到7个尖,这使它与其他千禧年物种区别开来。在种群中发现了一只雄性标本,有证据表明,一只孤立的成年雌性在没有产卵的情况下换了两次毛。这有力地表明,这个群体中存在双性恋生殖。本文描述了新发现的物种——黄花千万年(Milnesium rastrum sp. nov.)的系统发育位置,并对其在恶劣环境下的繁殖策略进行了讨论。
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引用次数: 0
Molecular Phylogeny of Thoracotreme Crabs Including Nine Newly Determined Mitochondrial Genomes. 胸甲目蟹的分子系统发育,包括9个新发现的线粒体基因组。
IF 0.9 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-06-01 DOI: 10.2108/zs220063
Genki Kobayashi, Hajime Itoh, Nobuyoshi Nakajima

Mitochondrial genomes are used widely for the molecular phylogenetic analysis of animals. Although phylogenetic analyses based on the mitogenomes of brachyurans often yield well-resolved phylogenies, most interfamilial phylogenetic relationships in Thoracotremata remain unclear. We determined nine new mitogenomes of Thoracotremata, including mitogenomes of Camptandriidae (Deiratonotus japonicus), Dotillidae (Ilyoplax integra, Ilyoplax pusilla, and Tmethypocoelis choreutes), Macrophthalmidae (Ilyograpsus nodulosus), Pinnotheridae (Arcotheres sp. and Indopinnixa haematosticta), Plagusiidae (Guinusia dentipes), and Percnidae (Percnon planissimum). Interestingly, Percnon planissimum (Percnidae) was found to possess ≥ 19 repeated sequences in the control region. The gene orders of Il. nodulosus, Arcotheres sp., and In. haematosticta were revealed to be unique among thoracotreme crabs. Although the results of Bayesian and maximum likelihood (ML) phylogenetic analyses of three datasets were incongruent, highly supported clades (PP ≥ 0.99 or BS ≥ 99%) were not contradictory among the analyses. All analyses suggested the paraphyly of Grapsoidea and Ocypodoidea, corroborating the findings of previous studies based on molecular phylogenies of thoracotreme crabs. The phylogenetic positions of symbiotic thoracotreme crabs, Pinnotheridae and Cryptochiridae, were highly supported (Pinnotheridae + Ocypodidae and Cryptochiridae + Grapsidae, respectively) for the Bayesian analyses but not for the ML analyses. Analyses of more thoracotreme species' mitogenome sequences in additional studies will further strengthen the framework for thoracotreme evolution.

线粒体基因组被广泛用于动物的分子系统发育分析。尽管基于短肢动物有丝分裂基因组的系统发育分析经常得到很好解决的系统发育问题,但胸肢动物的大多数家族间系统发育关系仍然不清楚。我们确定了9个新的胸吸螨有丝分裂基因组,包括Camptandriidae (Deiratonotus japonicus)、dotilliae (Ilyoplax integra、Ilyoplax pusilla和Tmethypocoelis choreutes)、Macrophthalmidae (Ilyograpsus nodulosus)、Pinnotheridae (arcops .和Indopinnixa haematosticta)、Plagusiidae (Guinusia dentipes)和Percnon planissimum)。有趣的是,在对照区发现Percnon planissimum (Percnon Percnidae)具有≥19个重复序列。结瘤菌属(ili . nodulosus)、arco有菌属(arco有菌属)和In.的基因序列。在胸甲目蟹中发现了独特的吸血虫。虽然三个数据集的贝叶斯和最大似然(ML)系统发育分析结果不一致,但高度支持的进化支(PP≥0.99或BS≥99%)在分析中并不矛盾。所有的分析结果都表明,胸甲蟹属于grapo总科和ocypodo总科,这证实了以往基于胸甲蟹分子系统发育的研究结果。共生胸甲蟹的系统发育位置(Pinnotheridae + cypodidae和Cryptochiridae + Grapsidae)在Bayesian分析中得到高度支持,但在ML分析中没有得到高度支持。对更多胸甲目物种有丝分裂基因组序列的进一步分析将进一步加强胸甲目进化的框架。
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引用次数: 1
Landscape Genetic Analysis for the Japanese Wild Boar in the Early Expanding Stage in the Hokuriku Region of Japan. 日本北陆地区扩大初期日本野猪景观遗传分析。
IF 0.9 4区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-06-01 DOI: 10.2108/zs220082
Yuji Yamazaki, Daisuke Shimizu, Takumi Watanabe

As a contribution to improving management of the Japanese wild boar (Sus scrofa leucomystax), which has recently expanded its range and is having some negative effects on the ecosystem, we conducted a landscape genetic study using individual-based genetic analysis and multiple landscape elements to elucidate its dispersal patterns in the early stage of its expansion. Microsatellite DNA analysis of Japanese wild boars in the Hokuriku region of Japan revealed the existence of two ancestral genetic clusters, that they had migrated via different pathways, and that they were inadequately admixed. We also inferred the most suitable habitats for Japanese wild boar using MaxEnt and concluded that lower elevation and snowfall may favor the occurrence of wild boar individuals. Landscape genetic analysis indicated regional differences in Japanese wild boar dispersal patterns, according to the spatial heterogeneity of genetic features and landscape elements. On the western side of the study area, where individuals with a high frequency of one of two ancestral clusters were more abundant, significant effects of isolation by distance and resistance due to the above two landscape factors were detected, suggesting unidirectional dispersion influenced by the alpine landscape. In contrast, on the eastern side, there was indication of resistance to dispersal of individuals predominantly possessing another ancestral cluster, suggesting the influence of irregularly arranged suitable habitats due to the complexity of the mountainous terrain. Based on our findings, we conclude that Japanese wild boar dispersal patterns may be influenced by landscape elements, such as alpine mountains.

为了提高日本野猪(Sus scrofa leucomystax)的管理水平,我们利用基于个体的遗传分析和多种景观元素来阐明其扩张早期的扩散模式。对日本北ku地区的日本野猪进行的微卫星DNA分析显示,它们存在两个祖先遗传集群,它们通过不同的途径迁移,并且它们没有充分混合。利用MaxEnt推断了日本野猪最适宜的栖息地,并得出低海拔和降雪可能有利于野猪个体的发生。景观遗传分析表明,根据遗传特征和景观要素的空间异质性,日本野猪扩散格局存在区域差异。在研究区西侧,两个祖先群中某一个祖先群频率较高的个体数量较多,但由于上述两种景观因素的影响,距离和阻力的隔离效应显著,表明受高山景观影响的单向分散。相比之下,在东侧,有迹象表明,主要拥有另一个祖先集群的个体对分散存在阻力,这表明由于山区地形的复杂性,适合栖息地的不规则安排受到了影响。基于以上研究结果,我们认为日本野猪的扩散模式可能受到高山等景观因素的影响。
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引用次数: 0
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