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Dissecting the mystery of embryonic scaling: The Scalers Hypothesis and its confirmation in sea urchin embryos. 剖析胚胎缩放之谜:缩放假说及其在海胆胚胎中的证实
IF 2.1 4区 生物学 Q3 DEVELOPMENTAL BIOLOGY Pub Date : 2024-10-20 DOI: 10.1016/j.cdev.2024.203972
Polina S Timoshina, Alexey M Nesterenko, Elena A Parshina, Eugeny E Orlov, Fedor M Eroshkin, Andrey G Zaraisky

Embryonic scaling, the ability of embryos to regulate their spatial structure in proportion to size, remains a fascinating yet poorly studied problem in developmental biology. First described in sea urchin embryos by Hans Driesch, this phenomenon is now recognized as a striking example of how living organisms use non-equilibrium self-organization, based on reaction-diffusion (RD) systems, to generate pattern-determining morphogen concentration gradients that scale with size. Although specific molecular mechanisms for scaling such gradients have been described in some cases, a general approach for the targeted identification of such mechanisms had not been developed until recently. In search of a solution, we hypothesized the obligatory participation in scaling mechanisms of special genes, which we named "scalers." We supposed that these genes share two critical features: their expression is sensitive to embryo size, and their protein products determine the scale of morphogen concentration gradients. As proof of principle, we recently identified scalers by detecting differentially expressed genes in wild-type and half-size Xenopus laevis gastrula embryos. Furthermore, we described a mechanism by which one of the identified scalers, the gene encoding Metalloproteinase 3 (Mmp3), regulates the scaling of gradients of the morphogenic protein Bmp and its antagonists, Chordin and Noggin1/2. In the present work, we have made an important theoretical generalization of the Scalers Hypothesis by proving a statement regarding the obligatory presence of scalers in closed RD systems generating morphogen concentration gradients. Furthermore, through a systematic analysis of all known types of embryonic scaling models based on RD systems, we demonstrate that scalers are present in all known types of such models, either explicitly or implicitly. Finally, to test the universality of the Scalers Hypothesis, we applied our method to identify scalers that adjust Bmp/Chordin gradients to the size of the sea urchin embryo, Strongylocentrotus droebachiensis. Our results show that at least two members of the gene cluster encoding astacin metalloproteinases of the Span family, namely bp10 and Span, exhibit properties characteristic of scalers. Namely, their expression levels increase significantly in half-size embryos, and their protein products specifically degrade Chordin. Additionally, we found that the loss of function of bp10 and span leads to a narrowing of the dorsal domain of the Bmp signaling nuclear effector, pSmad1/5. These findings not only validate the Scalers Hypothesis but also uncover a novel mechanism by which Span proteinases fine-tune Chordin and Bmp morphogen concentration gradients in sea urchins. Thus, the Scalers Hypothesis and the approach to targeted search for such genes developed on its basis open up promising avenues for future research into scaling mechanisms in various biological systems.

胚胎缩放是指胚胎根据大小调节其空间结构的能力,它仍然是发育生物学中一个引人入胜但研究不多的问题。这一现象最早由汉斯-德里希(Hans Driesch)在海胆胚胎中描述,现在已被认为是生物体如何利用非平衡自组织(基于反应-扩散(RD)系统)产生决定模式的形态发生器浓度梯度(随大小而扩展)的一个突出例子。虽然在某些情况下已经描述了这种梯度缩放的特定分子机制,但直到最近才开发出有针对性地识别这种机制的通用方法。为了寻找解决方案,我们假设特殊基因必须参与缩放机制,并将其命名为 "缩放器"。我们认为这些基因有两个共同的关键特征:它们的表达对胚胎大小很敏感,它们的蛋白产物决定了形态发生器浓度梯度的大小。作为原理证明,我们最近通过检测野生型和半大小爪爪蟹胃胚胎中不同表达的基因,确定了缩放器。此外,我们还描述了已发现的缩放器之一--编码金属蛋白酶 3(Mmp3)的基因--调节形态发生蛋白 Bmp 及其拮抗剂 Chordin 和 Noggin1/2 梯度缩放的机制。在本研究中,我们对 "缩放器假说"(Scalers Hypothesis)进行了重要的理论概括,证明了在产生形态发生浓度梯度的封闭 RD 系统中必须存在缩放器。此外,通过对所有已知类型的基于 RD 系统的胚胎缩放模型进行系统分析,我们证明了缩放器或明或暗地存在于所有已知类型的此类模型中。最后,为了检验 "缩放器假说 "的普遍性,我们应用我们的方法识别了根据海胆胚胎(Strongylocentrotus droebachiensis)的大小调整 Bmp/Chordin 梯度的缩放器。我们的研究结果表明,编码Span家族astacin金属蛋白酶的基因簇中至少有两个成员(即bp10和Span)表现出了缩放器的特性。也就是说,它们在半大胚胎中的表达水平显著增加,其蛋白产物能特异性地降解 Chordin。此外,我们发现 bp10 和 span 的功能缺失会导致 Bmp 信号核效应子 pSmad1/5 的背侧结构域变窄。这些发现不仅验证了 "Scalers假说",而且揭示了一种新的机制,即Span蛋白酶可微调海胆中Chordin和Bmp形态发生因子的浓度梯度。因此,"缩放假说 "和在其基础上开发的定向搜寻此类基因的方法为未来研究各种生物系统中的缩放机制开辟了前景广阔的途径。
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引用次数: 0
Of criminals and cancer: The importance of social bonds and innate morality on cellular societies. 罪犯与癌症社会纽带和先天道德对细胞社会的重要性。
IF 2.1 4区 生物学 Q3 DEVELOPMENTAL BIOLOGY Pub Date : 2024-08-14 DOI: 10.1016/j.cdev.2024.203964
Anuraag Bukkuri, Frederick R Adler

The current dogma in cancer biology contends that cancer is an identity problem: mutations in a cell's DNA cause it to "go rogue" and proliferate out of control. However, this largely ignores the role of cell-cell interaction and fails to explain phenomena such as cancer reversion, the existence of cancers without mutations, and foreign-body carcinogenesis. In this proof-of-concept paper, we draw on criminology to propose that cancer may alternatively be conceptualized as a relational problem: Although a cell's genetics is essential, the influence of its interaction with other cells is equally important in determining its phenotype. We create a simple agent-based network model of interactions among normal and cancer cells to demonstrate this idea. We find that both high mutation rates and low levels of connectivity among cells can promote oncogenesis. Viewing cancer as a breakdown in communication networks among cells in a tissue complements the gene-centric paradigm nicely and provides a novel perspective for understanding and treating cancer.

目前癌症生物学的教条认为,癌症是一个身份问题:细胞 DNA 的突变导致细胞 "失控 "和增殖失控。然而,这在很大程度上忽视了细胞与细胞之间相互作用的作用,无法解释癌症逆转、表观遗传癌症的存在以及异物致癌等现象。在这篇概念验证论文中,我们借鉴犯罪学的观点,提出癌症也可以被概念化为一个关系问题:虽然细胞的遗传至关重要,但细胞与其他细胞的相互作用对决定其表型也同样重要。我们创建了一个简单的基于代理的正常细胞与癌细胞之间相互作用的网络模型来证明这一观点。我们发现,细胞间的高突变率和低连通性都会促进肿瘤发生。将癌症视为组织中细胞间通信网络的破坏,很好地补充了以基因为中心的范式,为理解和治疗癌症提供了一个新的视角。
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引用次数: 0
'Three signals - three body axes' as patterning principle in bilaterians. 三信号-三体轴 "是两栖动物的模式化原则。
IF 2.1 4区 生物学 Q3 DEVELOPMENTAL BIOLOGY Pub Date : 2024-08-08 DOI: 10.1016/j.cdev.2024.203944
Christof Niehrs, Ettore Zapparoli, Hyeyoon Lee

In vertebrates, the three orthogonal body axes, anteroposterior (AP), dorsoventral (DV) and left-right (LR) are determined at gastrula and neurula stages by the Spemann-Mangold organizer and its equivalents. A common feature of AP and DV axis formation is that an evolutionary conserved interplay between growth factors (Wnt, BMP) and their extracellular antagonists (e.g. Dkk1, Chordin) creates signaling gradients for axial patterning. Recent work showed that LR patterning in Xenopus follows the same principle, with R-spondin 2 (Rspo2) as an extracellular FGF antagonist, which creates a signaling gradient that determines the LR vector. That a triad of anti-FGF, anti-BMP, and anti-Wnt governs LR, DV, and AP axis formation reveals a unifying principle in animal development. We discuss how cross-talk between these three signals confers integrated AP-DV-LR body axis patterning underlying developmental robustness, size scaling, and harmonious regulation. We propose that Urbilateria featured three orthogonal body axes that were governed by a Cartesian coordinate system of orthogonal Wnt/AP, BMP/DV, and FGF/LR signaling gradients.

在脊椎动物中,三个正交体轴,即前后轴(AP)、背腹轴(DV)和左右轴(LR),是在胚胎期和神经细胞期由 Spemann-Mangold 组织器及其等同物决定的。AP轴和DV轴形成的一个共同特征是,生长因子(Wnt、BMP)和它们的细胞外拮抗剂(如Dkk1、Chordin)之间在进化过程中形成的相互作用为轴形态的形成创造了信号梯度。最近的研究表明,爪蟾的 LR 形态也遵循同样的原理,R-spondin 2(Rspo2)是细胞外 FGF 拮抗剂,它产生的信号梯度决定了 LR 的矢量。抗 FGF、抗 BMP 和抗 Wnt 三者共同控制着 LR、DV 和 AP 轴的形成,这揭示了动物发育中的一个统一原则。我们讨论了这三种信号之间的交叉作用是如何赋予AP-DV-LR体轴综合模式化的,这种模式化是发育稳健性、大小缩放和和谐调控的基础。我们提出 Urbilateria 具有三个正交的体轴,这些体轴受正交的 Wnt/AP、BMP/DV 和 FGF/LR 信号梯度的直角坐标系控制。
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引用次数: 0
Podoplanin and its multifaceted roles in mammalian developmental program. Podoplanin 及其在哺乳动物发育过程中的多方面作用
IF 2.1 4区 生物学 Q3 DEVELOPMENTAL BIOLOGY Pub Date : 2024-08-05 DOI: 10.1016/j.cdev.2024.203943
Yi Ying Cheok, Grace Min Yi Tan, Yee Teng Chan, Suhailah Abdullah, Chung Yeng Looi, Won Fen Wong

Podoplanin is a vital molecule which plays an integral part in the regulation of development, immunity, and cancer. Expression of Podoplanin is detected at different early developmental stages of mammalian embryo, and it functions to modulate morphogenesis of various organ systems. In experimental animal models of different genetic backgrounds, absence of Podoplanin results in either embryonic lethality or immediate death upon birth, suggesting the importance of the gene in early developmental processes. This review discusses the gene and protein structure of Podoplanin; and elucidates various functions of Podoplanin in different systems, including central nervous system as well as respiratory, lymphatic, and cardiovascular systems.

Podoplanin 是一种重要的分子,在调节发育、免疫和癌症方面发挥着不可或缺的作用。在哺乳动物胚胎的不同早期发育阶段都能检测到 Podoplanin 的表达,它具有调节不同器官系统形态发生的功能。在不同遗传背景的实验动物模型中,缺乏 Podoplanin 会导致胚胎死亡或出生后立即死亡,这表明该基因在早期发育过程中的重要性。本综述讨论了 Podoplanin 的基因和蛋白质结构,并阐明了 Podoplanin 在不同系统中的各种功能,包括中枢神经系统、呼吸系统、淋巴系统和心血管系统。
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引用次数: 0
Self-organization underlies developmental robustness in plants. 自组织是植物发育稳健性的基础。
IF 2.1 4区 生物学 Q3 DEVELOPMENTAL BIOLOGY Pub Date : 2024-07-01 DOI: 10.1016/j.cdev.2024.203936
Shuyao Kong, Mingyuan Zhu, Adrienne H K Roeder

Development is a self-organized process that builds on cells and their interactions. Cells are heterogeneous in gene expression, growth, and division; yet how development is robust despite such heterogeneity is a fascinating question. Here, we review recent progress on this topic, highlighting how developmental robustness is achieved through self-organization. We will first discuss sources of heterogeneity, including stochastic gene expression, heterogeneity in growth rate and direction, and heterogeneity in division rate and precision. We then discuss cellular mechanisms that buffer against such noise, including Paf1C- and miRNA-mediated denoising, spatiotemporal growth averaging and compensation, mechanisms to improve cell division precision, and coordination of growth rate and developmental timing between different parts of an organ. We also discuss cases where such heterogeneity is not buffered but utilized for development. Finally, we highlight potential directions for future studies of noise and developmental robustness.

发育是一个建立在细胞及其相互作用基础上的自组织过程。细胞在基因表达、生长和分裂方面存在异质性;然而,尽管存在这种异质性,发育如何保持稳健是一个引人入胜的问题。在此,我们将回顾这一课题的最新进展,重点介绍如何通过自组织实现发育的稳健性。我们将首先讨论异质性的来源,包括随机基因表达、生长速度和方向的异质性以及分裂速度和精确度的异质性。然后,我们将讨论缓冲这些噪音的细胞机制,包括由 Paf1C 和 miRNA 介导的去噪、时空生长平均化和补偿、提高细胞分裂精确度的机制,以及协调器官不同部位之间的生长速度和发育时间。我们还讨论了这种异质性不是被缓冲而是被用于发育的情况。最后,我们强调了未来研究噪声和发育稳健性的潜在方向。
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引用次数: 0
Head organizer: Cerberus and IGF cooperate in brain induction in Xenopus embryos. Head organizer:Cerberus和IGF在爪蟾胚胎大脑诱导过程中的合作
IF 3.9 4区 生物学 Q3 DEVELOPMENTAL BIOLOGY Pub Date : 2023-12-16 DOI: 10.1016/j.cdev.2023.203897
Yagmur Azbazdar, Edgar M Pera, Edward M De Robertis

Neural induction by cell-cell signaling was discovered a century ago by the organizer transplantations of Spemann and Mangold in amphibians. Spemann later found that early dorsal blastopore lips induced heads and late organizers trunk-tail structures. Identifying region-specific organizer signals has been a driving force in the progress of animal biology. Head induction in the absence of trunk is designated archencephalic differentiation. Two specific head inducers, Cerberus and Insulin-like growth factors (IGFs), that induce archencephalic brain but not trunk-tail structures have been described previously. However, whether these two signals interact with each other had not been studied to date and was the purpose of the present investigation. It was found that Cerberus, a multivalent growth factor antagonist that inhibits Nodal, BMP and Wnt signals, strongly cooperated with IGF2, a growth factor that provides a positive signal through tyrosine kinase IGF receptors that activate MAPK and other pathways. The ectopic archencephalic structures induced by the combination of Cerberus and IGF2 are of higher frequency and larger than either one alone. They contain brain, a cyclopic eye and multiple olfactory placodes, without trace of trunk structures such as notochord or somites. A dominant-negative secreted IGF receptor 1 blocked Cerberus activity, indicating that endogenous IGF signals are required for ectopic brain formation. In a sensitized embryonic system, in which embryos were depleted of β-catenin, IGF2 did not by itself induce neural tissue while in combination with Cerberus it greatly enhanced formation of circular brain structures expressing the anterior markers Otx2 and Rx2a, but not spinal cord or notochord markers. The main conclusion of this work is that IGF provides a positive signal initially uniformly expressed throughout the embryo that potentiates the effect of an organizer-specific negative signal mediated by Cerberus. The results are discussed in the context of the history of neural induction.

一个世纪前,斯佩曼(Spemann)和曼戈尔德(Mangold)通过两栖动物的组织器移植发现了细胞-细胞信号的神经诱导。斯佩曼后来发现,早期背侧胚泡唇诱导头部,晚期组织者诱导躯干-尾部结构。识别区域特异性组织者信号一直是动物生物学进步的推动力。在没有躯干的情况下诱导出头部被称为拱脑分化。两种特异性头部诱导因子 Cerberus 和胰岛素样生长因子 (Insulin-like growth factors, IGFs),可诱导头状脑分化,但不诱导躯干-尾部结构。然而,迄今为止,这两种信号是否相互影响尚未研究,这也是本次调查的目的。研究发现,Cerberus(一种抑制 Nodal、BMP 和 Wnt 信号的多价生长因子拮抗剂)与 IGF2(一种通过酪氨酸激酶 IGF 受体提供积极信号、激活 MAPK 和其他通路的生长因子)之间存在密切的合作关系。由 Cerberus 和 IGF2 共同诱导的异位拱脑结构比单独使用其中一种的频率更高、更大。它们包含大脑、环状眼和多个嗅胎座,但没有脊索或体节等躯干结构的痕迹。显性阴性分泌型 IGF 受体 1 阻断了 Cerberus 的活动,表明异位脑的形成需要内源性 IGF 信号。在一个去除了β-catenin的敏化胚胎系统中,IGF2本身并不能诱导神经组织的形成,而与Cerberus结合则能大大促进表达前部标记Otx2和Rx2a的环状脑结构的形成,但不能诱导脊髓或脊索标记的形成。这项工作的主要结论是,IGF 提供了一种最初在整个胚胎中均匀表达的积极信号,这种信号增强了由 Cerberus 介导的组织者特异性消极信号的效果。本文结合神经诱导的历史对这一结果进行了讨论。
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引用次数: 0
Inflammation and oxidative stress impair preimplantation embryonic morphogenesis in allergic asthma model. 炎症和氧化应激对过敏性哮喘模型着床前胚胎形态发生的影响。
IF 3.9 4区 生物学 Q3 DEVELOPMENTAL BIOLOGY Pub Date : 2023-06-13 DOI: 10.2139/ssrn.4367239
Che Ismail Wafriy, Y. S. Kamsani, M. Nor-Ashikin
The incidence of allergic asthma has been increasing worldwide in recent decades. Also, an increasing number of women are suffering from poor pregnancy outcome. However, the causal relationship between allergic asthma and embryonic growth in terms of cell morphogenesis has not been well elucidated. Here, we investigated the impact of allergic asthma on the morphogenesis of preimplantation embryos. Twenty-four female BALB/c were randomly divided into control (PBS), 50-μg (OVA1), 100-μg (OVA2) and 150-μg (OVA3). On Days-0 and -14, mice were induced intraperitoneally (i.p) with ovalbumin (OVA). On Days-21 until -23, mice were challenged with OVA via intranasal instillation (i.n). Control animals were sensitized and challenged with PBS. At the end of treatment (Day-25), 2-cell embryos were retrieved and cultured in vitro until the blastocysts hatched. Results showed reduced number of preimplantation embryos at all developing stages in all treated groups (p ≤ 0.0001). Uneven blastomere size, partial compaction- and cavitation-activity, low formation of trophectoderm (TE), as well as cell fragmentation were noted in all the treated groups. Maternal serum interleukin (IL)-4, immunoglobulin (Ig)-E and 8-hydroxydeoxyguanosine (8-OHdG) were notably high (p ≤ 0.0001, p ≤ 0.01) in contrast with low total antioxidant capacity (TAOC) (p ≤ 0.0001). Our findings indicated that OVA-induced allergic asthma had compromised cell morphogenesis through reduced blastomere cleavage division, partial compaction and cavitation-activity, impairment of TE production, and cell fragmentation leading to embryonic cell death via OS mechanism.
近几十年来,过敏性哮喘的发病率在全球范围内呈上升趋势。此外,越来越多的妇女遭受怀孕结果不佳的痛苦。然而,过敏性哮喘与胚胎发育之间在细胞形态发生方面的因果关系尚未得到很好的阐明。本研究探讨过敏性哮喘对着床前胚胎形态发生的影响。24只雌性BALB/c随机分为对照组(PBS)、50 μg (OVA1)、100 μg (OVA2)和150 μg (OVA3)。在第0天和第14天,小鼠腹腔注射卵清蛋白(OVA)。在第21天至第23天,小鼠通过鼻内滴注(i.n)注射OVA。对照动物用PBS致敏和刺激。在处理结束时(第25天),取出2细胞胚胎并在体外培养,直到囊胚孵化。结果显示,所有处理组在所有发育阶段的着床前胚胎数量均减少(p ≤ 0.0001)。在所有处理组中,卵裂球大小不均匀,部分压实和空化活性,滋养外胚层(TE)形成低以及细胞碎裂都被注意到。血清白细胞介素(IL)-4、免疫球蛋白(Ig)-E和8-羟基脱氧鸟苷(8-OHdG)含量显著高(p ≤ 0.0001,p ≤ 0.01),而总抗氧化能力(TAOC)较低(p ≤ 0.0001)。我们的研究结果表明,ova诱导的过敏性哮喘通过降低卵裂球切割分裂、部分压实和空化活性、TE产生障碍以及通过OS机制导致胚胎细胞死亡的细胞分裂来破坏细胞形态发生。
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引用次数: 1
Disrupted neurogenesis, gliogenesis, and ependymogenesis in the Ccdc85c knockout rat for hydrocephalus model. 脑积水模型中Ccdc85c基因敲除大鼠神经发生、胶质瘤发生和室管膜形成被破坏。
IF 3.9 4区 生物学 Q3 DEVELOPMENTAL BIOLOGY Pub Date : 2023-06-01 DOI: 10.2139/ssrn.4367238
Mehedi Hasan, Shizuka Konishi, Miyuu Tanaka, T. Izawa, J. Yamate, M. Kuwamura
Coil-coiled domain containing 85c (Ccdc85c) is a causative gene for congenital hydrocephalus and subcortical heterotopia with frequent brain hemorrhage. We established Ccdc85c knockout (KO) rats and investigated the roles of CCDC85C and intermediate filament protein expression, including nestin, vimentin, GFAP, and cytokeratin AE1/AE3 during the lateral ventricle development in KO rats to evaluate the role of this gene. We found altered and ectopic expression of nestin and vimentin positive cells in the wall of the dorso-lateral ventricle in the KO rats during development from the age of postnatal day (P) 6, whereas both protein expression became faint in the wild-type rats. In the KO rats, there was a loss of cytokeratin expression on the surface of the dorso-lateral ventricle with ectopic expression and maldevelopment of ependymal cells. Our data also revealed disturbed GFAP expression at postnatal ages. These findings indicate that lack of CCDC85C disrupts the proper expression of intermediate filament proteins (nestin, vimentin, GFAP, and cytokeratin), and CCDC85C is necessary for normal neurogenesis, gliogenesis, and ependymogenesis.
含有85c的螺旋结构域(Ccdc85c)是先天性脑积水和皮质下异位并频繁脑出血的致病基因。我们建立了Ccdc85c敲除(KO)大鼠,研究了Ccdc85c和中间丝蛋白表达,包括巢蛋白、波形蛋白、GFAP和细胞角蛋白AE1/AE3在KO大鼠侧脑室发育中的作用,以评估该基因的作用。我们发现,从出生后6天开始,KO大鼠的背侧脑室壁中巢蛋白和波形蛋白阳性细胞的表达发生了改变和异位,而野生型大鼠的这两种蛋白的表达都变得微弱。在KO大鼠中,背侧脑室表面细胞角蛋白表达缺失,室管膜细胞异位表达和发育不良。我们的数据还显示出生后GFAP表达紊乱。这些发现表明,缺乏CCDC85C会破坏中间丝蛋白(巢蛋白、波形蛋白、GFAP和细胞角蛋白)的正常表达,而CCDC85C对于正常的神经发生、胶质形成和室管膜形成是必需的。
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引用次数: 1
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Cells & Development
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