The YycF/G two-component system (TCS) is crucial for the environmental adaptation of probiotics. However, its molecular role in maintaining probiotic functions and physiological homeostasis in Lactobacillus reuteri (L. reuteri) remains incompletely understood. Accordingly, this study generated a yycF knockout mutant (ΔyycF) in L. reuteri using homologous recombination technology. Systematic analysis revealed that the mutant exhibits critical defects in cell wall integrity, growth retardation, and morphology, accompanied by significant downregulation of biofilm-associated genes and cell division genes. Phenotypic analysis revealed multifaceted impairments in probiotic properties, including compromised stress tolerance (increased sensitivity to simulated gastrointestinal fluids, bile salts, and osmotic stress), altered surface characteristics (reduced hydrophobicity and auto-aggregation capacity), diminished antagonistic activity (weakened pathogen inhibition), and significantly impaired epithelial adhesion capacity and antioxidant activity. Notably, transcriptomic analysis and animal experiments confirmed that yycF deletion not only reduced intestinal colonization efficiency but also impaired microbial homeostasis regulation, particularly by reducing the abundance of the beneficial bacterium Akkermansia. This study reveals that yycF modulates cellular morphogenesis and probiotic attributes in L. reuteri by coordinating a regulatory cascade network that links cell division, biofilm formation, and stress response. These findings not only provide mechanistic insights into the molecular basis of environmental adaptation in probiotics but also establish a theoretical framework for molecular-guided probiotic breeding and the development of next-generation engineered probiotics.
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