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Kinetic study of the effect of Mg2+ and Ca2+ on the hydrolysis of ATP up to 120 °C Mg2+和Ca2+对120℃下ATP水解影响的动力学研究
IF 5 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2025-11-09 DOI: 10.1016/j.gca.2025.11.006
Christoph Moeller , Denis Testemale , Christian Schmidt , Maria Kokh , François Guyot , Max Wilke
Extremophiles, microorganisms that thrive in extreme environments, have broadened our understanding of fundamental life processes. Cultivated strains of extremophiles have demonstrated the viability of life at temperatures up to 122 °C and pressures up to 125 MPa. These physical extremes affect intracellular mechanisms such as metabolism. At high temperatures, the key metabolite adenosine triphosphate (ATP) is subject to abiotic hydrolysis. In cells, ATP is complexed mostly with Mg2+. Although this complexation is well known, its role during abiotic ATP hydrolysis under extreme conditions has rarely been investigated.
This study presents novel kinetic data which are supported by thermodynamic modeling pertaining to ATP hydrolysis at elevated temperatures and 20 MPa in presence of Mg2+ and other cations. Kinetic parameters for abiotic hydrolysis were determined using in situ Raman spectroscopy in combination with a hydrothermal diamond anvil cell and a gas-pressurized autoclave equipped with a sapphire cell. Hydrolysis rate constants were studied using Mg2+, Ca2+, and Na+ as ATP counterions at temperatures of 80 °C, 100 °C, and 120 °C under pressures of 20 MPa. Our findings indicate that Na+ and Ca2+ ions have negligible effects on ATP hydrolysis rates. In contrast, increasing the Mg2+ concentration to fourfold the ATP concentration resulted in a pronounced decrease of the hydrolysis rate, with reductions of approximately 30 % at 80 °C and 50 % at 120 °C. By comparison with known biotic pool turnover rates, this kinetic stabilization of ATP reinforces previous findings that its abiotic hydrolysis is not a limiting factor for life at high temperature. Furthermore, these results suggest that Mg2+-rich intracellular compositions can reduce the energy investment required to maintain ATP homeostasis in biological systems. Thermodynamic modeling revealed increasing complexation of ATP with Mg2+ ions with increasing temperature and magnesium ions concentration. Under experimental conditions of pH 2 to 3, a continuous formation of MgH2ATP complexes was calculated, leading to a deceleration of the abiotic hydrolysis rate. At pH 6 to 9, the formation of MgATP2- was calculated at equimolar concentrations of ATP and Mg2+ ions. Above 80 °C and pH values between 6 and 9, thermodynamic modelling indicated the formation of Mg2ATP when the Mg2+ concentration was increased above the equimolar point.
极端微生物是在极端环境中茁壮成长的微生物,它们扩大了我们对基本生命过程的理解。培养的极端微生物菌株在高达122°C的温度和高达125 MPa的压力下证明了生命的活力。这些生理极端影响细胞内机制,如代谢。在高温下,关键代谢产物三磷酸腺苷(ATP)会发生非生物水解。在细胞中,ATP主要与Mg2+络合。虽然这种络合作用是众所周知的,但它在极端条件下非生物ATP水解中的作用很少被研究。本研究提出了新的动力学数据,这些数据由热力学模型支持,该模型与高温和20mpa下Mg2+和其他阳离子存在下ATP水解有关。利用原位拉曼光谱,结合水热金刚石砧池和配备蓝宝石池的气压高压灭菌器,确定了非生物水解的动力学参数。以Mg2+、Ca2+和Na+为ATP反离子,在温度为80℃、100℃和120℃,压力为20 MPa的条件下,研究了水解速率常数。我们的研究结果表明Na+和Ca2+离子对ATP水解率的影响可以忽略不计。相比之下,将Mg2+浓度增加到ATP浓度的四倍,导致水解率明显降低,在80°C时降低约30%,在120°C时降低约50%。与已知的生物池周转率相比,ATP的这种动力学稳定强化了之前的发现,即它的非生物水解不是高温下生命的限制因素。此外,这些结果表明,富Mg2+的细胞内成分可以减少维持生物系统中ATP稳态所需的能量投入。热力学模型表明,ATP与Mg2+离子的络合作用随着温度和镁离子浓度的升高而增加。在pH为2 ~ 3的实验条件下,计算了MgH2ATP络合物的连续形成,导致非生物水解速率的减慢。在pH为6 ~ 9时,计算了ATP和Mg2+离子等摩尔浓度下MgATP2-的形成。在温度高于80℃,pH值在6 ~ 9之间时,热力学模型表明,当Mg2+浓度增加到等摩尔点以上时,Mg2ATP生成。
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引用次数: 0
Neutron spectrum variations in the lunar subsurface evaluated from isotopic shifts in Apollo 15 deep drill core samples 从阿波罗15号深钻岩心样品的同位素变化评估月球地下中子谱的变化
IF 5 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2025-11-08 DOI: 10.1016/j.gca.2025.11.013
Takaharu Saito , Kengo Iwamoto , Shigekazu Yoneda , Seung-Gu Lee , Hiroshi Hidaka
Neutron-capture reactions are fundamental processes driving isotopic variations among cosmic-ray-irradiated planetary materials. The energy spectra of neutrons interacting with these planetary materials provide insights into their cosmic-ray exposure conditions and enable quantitative estimates of neutron-induced isotopic shifts in elements of interest. In this study, we measured Yb and Hf isotopic compositions of Apollo15 deep drill core samples, which provide information on higher-energy neutrons compared with conventional neutron indicators of Sm, Gd, and Er. Furthermore, we developed a calculation method to reconstruct a neutron spectrum from isotopic shifts in Sm, Gd, Er, Yb and Hf. Applying the method to Apollo 15 samples revealed significant neutron spectrum variations in the lunar subsurface. The observed epithermal neutron spectrum variations likely reflect depth dependence of energy moderation processes of neutrons. A neutron spectrum at the lunar surface estimated from our data is enriched in lower-energy epithermal neutrons compared with those calculated from numerical calculations in previous studies. The depth-dependent spectrum variations observed in the Apollo 15 samples possibly affect correction calculations of neutron-capture effects for nuclides strongly influenced by epithermal neutrons, such as 176Hf. This is important in the context of accurate interpretation of radiometric and isotopic studies of lunar samples, which often record significantly high neutron fluences due to long-time cosmic-ray exposure on the lunar surface.
中子俘获反应是驱动宇宙射线照射的行星物质中同位素变化的基本过程。中子与这些行星物质相互作用的能谱提供了对它们的宇宙射线暴露条件的见解,并使对感兴趣元素的中子诱导同位素位移的定量估计成为可能。在这项研究中,我们测量了Apollo15深钻岩心样品的Yb和Hf同位素组成,与常规的Sm、Gd和Er中子指标相比,这些同位素组成提供了高能中子的信息。此外,我们开发了一种计算方法,可以从Sm, Gd, Er, Yb和Hf的同位素位移中重建中子谱。将该方法应用于阿波罗15号样本,揭示了月球地下显著的中子谱变化。观测到的超热中子能谱变化可能反映了中子能量缓和过程的深度依赖性。根据我们的数据估计的月球表面的中子谱与以前的研究中通过数值计算计算的中子谱相比富含低能超热中子。在阿波罗15号样品中观测到的与深度相关的光谱变化可能会影响受超热中子(如176Hf)强烈影响的核素的中子捕获效应的校正计算。这对于准确解释月球样本的辐射测定和同位素研究非常重要,因为这些研究经常记录到由于月球表面长期暴露在宇宙射线下而产生的显著高中子影响。
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引用次数: 0
Zinc isotopes equilibrium fractionation induced by α-Al2O3 surface adsorption and its implications: A density functional theory study α-Al2O3表面吸附诱导锌同位素平衡分馏及其意义:密度泛函理论研究
IF 5 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2025-11-08 DOI: 10.1016/j.gca.2025.11.004
Yin-Chuan Li, Hai-Zhen Wei, Martin R. Palmer, Ya-Ru Zhou, Hao-Long Li, Zhi-Jie Liu, Yong-Hui Li
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引用次数: 0
Acceptance of the 2025 Clair C. Patterson Medal to Avner Vengosh 2025年克莱尔·c·帕特森奖章授予Avner Vengosh
IF 5 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2025-11-07 DOI: 10.1016/j.gca.2025.11.008
Avner Vengosh
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引用次数: 0
Strong carbonate buffering in karst cascade river-reservoir systems constrains CO2 production and emissions 喀斯特级联河流-水库系统中强大的碳酸盐缓冲作用限制了二氧化碳的产生和排放
IF 5 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2025-11-07 DOI: 10.1016/j.gca.2025.11.003
Xuan Hu , Wanfa Wang , Lishan Ran , Sen Xu , Qiong Han , Francesco Ulloa-Cedamanos , Jun Zhong , Bei-Bei Chen , Shengde Yu , Dengming He , Wenhong Shi , Siqin Xu , Si-Liang Li
River cascade damming profoundly alters inland water carbon cycling, yet the carbonate buffering mechanisms under high partial pressure of carbon dioxide (pCO2) and low pH conditions in the hypolimnion and released water of karst reservoirs remain unclear. This study elucidated dissolved inorganic carbon (DIC) transport and transformation across cascade reservoirs within the Wujiang River basin, emphasizing the role of carbonate buffering in the fluxes and spatiotemporal patterns of CO2, as well as the stable isotopic composition of DIC (δ13CDIC). Water chemistry and dual isotope (δ13CDIC and Δ14CDIC) analysises suggest that in carbonate-rich reservoirs, carbonate dissolution and autochthonous particulate inorganic carbon driven by biological carbon pump create a dual buffering effect, reducing CO2 production and emissions by 57 %–80 %. Quantitative carbonate buffering modeling demonstrates that the strong carbonate buffering extends pCO2 and δ13CDIC equilibrium timescales by 2–100 times compared to non-buffered scenarios. Over extended timescales, water-carbonate mineral interactions in the cascade reservoirs of the Wujiang River impart buffering capacity, which not only suppresses CO2 production and emissions but also exerts an influence on isotopic fractionation. Therefore, the hypolimnion contributes to CO2 reduction (0.01–135.10 Gg CO2 year−1), while the released water has much lower CO2 fluxes than non-karst reservoirs, achieving a CO2 emission reduction of 5.40–93.28 Gg CO2 year−1. As reservoirs proliferate globally, integrating carbonate buffering into carbon budget assessments is essential for refining reservoir CO2 emission estimates, especially in karst regions that account for 10 %–15 % of Earth’s continental surface.
河流梯级筑坝深刻地改变了内陆水体的碳循环,但喀斯特水库低磷水和释放水在高二氧化碳分压和低pH条件下的碳酸盐缓冲机制尚不清楚。研究了吴江流域梯级水库中溶解无机碳(DIC)的运移转化过程,强调了碳酸盐缓冲作用在CO2通量和时空格局中的作用,以及DIC的稳定同位素组成(δ13CDIC)。水化学和双同位素(δ13CDIC和Δ14CDIC)分析表明,在富含碳酸盐的储层中,碳酸盐溶解和生物碳泵驱动的原生颗粒无机碳产生了双重缓冲作用,减少了57% ~ 80%的CO2产量和排放量。定量碳酸盐岩缓冲模拟表明,与无缓冲情景相比,强碳酸盐岩缓冲将pCO2和δ13CDIC平衡时间尺度延长了2-100倍。在较长时间尺度上,乌江梯级储层中的水-碳酸盐矿物相互作用具有缓冲能力,不仅抑制了CO2的产生和排放,而且对同位素分馏也有影响。因此,低聚阴离子对CO2的减少有一定的贡献(0.01 ~ 135.10 Gg CO2年−1),而释放水的CO2通量远低于非岩溶水库,实现了5.40 ~ 93.28 Gg CO2年−1的减少。随着储层在全球范围内的激增,将碳酸盐缓冲层纳入碳预算评估对于改进储层二氧化碳排放估算至关重要,特别是在占地球大陆表面10% - 15%的喀斯特地区。
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引用次数: 0
Citation of the 2025 Clair C. Patterson Medal to Avner Vengosh 2025年克莱尔·c·帕特森奖章授予Avner Vengosh
IF 5 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2025-11-07 DOI: 10.1016/j.gca.2025.11.007
W. Berry Lyons
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引用次数: 0
Citation for the 2025 Goldschmidt Award to Chris Hawkesworth 克里斯·霍克斯沃斯荣获2025年戈德施密特奖
IF 5 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2025-11-07 DOI: 10.1016/j.gca.2025.11.011
Claude Jaupart
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引用次数: 0
Soil iGDGTs temperature dependence: From the Tibetan Plateau to the global scale and its implications for the Holocene temperature conundrum
IF 5 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2025-11-07 DOI: 10.1016/j.gca.2025.11.005
Yanwu Duan , Shuo Hao , Qing Sun , Josef P. Werne , Aifeng Zhou , Yuling Zhou , Yuanxin Li , Mengjing Li , Lin Chen , Xianyong Cao , Fahu Chen
The Tibetan Plateau (TP) plays a pivotal role in resolving the Holocene temperature conundrum, yet temperature reconstructions from different proxies show significant regional discrepancies. Soil archaeal tetraether membrane lipids (iGDGTs) offer a promising solution to these inconsistencies, but their environmental response on the TP remains insufficiently understood. Here, we examine the distribution of soil iGDGTs across precipitation gradients on the TP (n = 66), evaluating the influence of temperature, precipitation, vegetation, and soil properties. These results are compared with data from 431 globally distributed non-paddy soils to assess the temperature dependence and uncertainties associated with the TEX86 proxy. The validated TEX86 proxy is then applied to reconstruct Holocene temperature changes from two well-dated loess-paleosol profiles (YWY14 and SHD09) in the northeastern TP. Our findings reveal distinct environmental responses of surface soil iGDGTs on the TP. In regions with a GDGT-0/Cren ratio < 2 (Cluster A), temperature is the dominant factor driving iGDGT distribution, particularly Cren′, with a significant positive correlation between soil TEX86 and mean annual air temperature (MAAT) (R2 = 0.50, p < 0.05). In contrast, in regions with GDGT-0/Cren > 2 (Cluster B), soil exchangeable ion concentrations (K+, Mg2+, Na+) are the primary determinants of iGDGT distribution, with no significant correlation between TEX86 and temperature. Additionally, we demonstrate a universal temperature response of soil TEX86 across global spatial and altitudinal gradients when GDGT-0/Cren < 2. However, the TEX86-MAAT relationship varies regionally, likely due to a combination of archaeal community heterogeneity and non-thermal control on lipid cyclization, highlighting the need for site-specific calibrations. Using the newly developed soil TEX86 proxy and MAAT transfer function on the TP, we reconstruct continuous Holocene warming trends for the YWY14 and SHD09 profiles, which are consistent with climate model outputs and paleoclimate data assimilation. Our results indicate that seasonal biases in proxies significantly contribute to discrepancies in regional temperature records, underscoring the critical role of these biases in resolving the Holocene temperature conundrum.
土壤古细菌四醚膜脂(iGDGTs)为这些不一致性提供了一个有希望的解决方案,但它们对TP的环境响应仍未充分了解。在这里,我们研究了土壤iGDGTs在TP (n = 66)上的跨降水梯度分布,评估了温度、降水、植被和土壤性质的影响。这些结果与来自431个全球分布的非水稻土壤的数据进行了比较,以评估与TEX86代理相关的温度依赖性和不确定性。然后应用验证的TEX86代理对青藏高原东北部两个确定年代的黄土-古土壤剖面(YWY14和SHD09)进行全新世温度变化重建。我们的研究结果揭示了表层土壤iGDGTs对TP的不同环境响应。在GDGT-0/Cren比值为<; 2的区域(聚类a),温度是驱动iGDGT分布的主导因子,尤其是Cren ',土壤TEX86与年平均气温(MAAT)呈显著正相关(R2 = 0.50, p < 0.05)。相反,在GDGT-0/Cren >; 2(簇B)区域,土壤交换离子浓度(K+、Mg2+、Na+)是iGDGT分布的主要决定因素,TEX86与温度之间无显著相关性。此外,当GDGT-0/Cren <; 2时,我们证明了土壤TEX86在全球空间和高度梯度上具有普遍的温度响应。然而,TEX86-MAAT的关系因地区而异,可能是由于古菌群落异质性和脂质环化的非热控制的结合,因此需要针对特定地点进行校准。利用新开发的土壤TEX86代理和MAAT在TP上的传递函数,我们重建了YWY14和SHD09剖面的连续全新世变暖趋势,结果与气候模式输出和古气候资料同化一致。我们的研究结果表明,代用品的季节偏差显著地导致了区域温度记录的差异,强调了这些偏差在解决全新世温度难题中的关键作用。
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引用次数: 0
Factors accounting for the variations in the organic matter maturation of the late Mesoproterozoic Taizi Formation 中元古代晚期太子组有机质成熟度变化的影响因素
IF 5 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2025-11-07 DOI: 10.1016/j.gca.2025.11.001
Dongdong Li , Genming Luo , Zhenbing She , Bing Shen , Dominic Papineau
Organic matter undergoes progressive biological degradation from production to burial. These transformations are primarily controlled by redox-dependent microbial activities and ultimately shape the composition of organic matter in sediments. However, evidence constraining degradation processes in ancient environments remains limited. Raman spectroscopic parameters, the intensity ratio between the ∼ 1350 cm−1 and ∼ 1600 cm−1 bands (I-value) and the full width at half maximum of the D1 band (W-value), provide a direct means to characterize the bonding and functional-group organization of organic matter, and, when integrated with geochemical proxies, offer a powerful approach to reconstruct the coupled processes of organic-matter degradation and preservation. In this study, we conducted systematic in-situ micro-Raman analyses of the late Mesoproterozoic Taizi Formation in the Shennongjia Group, South China, together with analyses of C–N isotopes, Fe speciation, and redox-sensitive elements, to evaluate the biodegradation history and its controlling factors. Our results show close relationships between variations in Raman parameters and multiple geochemical proxies in the Taizi Formation. Since these samples were deposited in similar sedimentary settings and experienced comparable thermal histories, we suggest that variations in Raman parameters likely resulted from redox-dependent microbial degradation of organic matter and perturbations in primary productivity. Specifically, the high fraction of recalcitrant organic matter revealed by high I-values and low W-values in the lower member and the lower part of the upper member was primarily caused by extensive degradation under oxic conditions. In contrast, the decreased I-values and increased W-values in the middle member suggest a decline in the fraction of recalcitrant organic matter, attributed to intensified marine anoxia. Notably, the significant decrease in I-values and increase in W-values in the upper part of the upper member, deposited under oxic conditions, were likely caused by an increase in primary productivity, which is supported by a distinct positive δ13Ccarb excursion in the late Mesoproterozoic. Together, these findings highlight the key role of redox dynamics and microbial activity in regulating the preservation of organic matter in ancient marine environments.
有机物从生产到埋藏经历了逐步的生物降解。这些转化主要由依赖氧化还原的微生物活动控制,并最终形成沉积物中有机质的组成。然而,限制古代环境中退化过程的证据仍然有限。拉曼光谱参数,即~ 1350 cm−1和~ 1600 cm−1波段的强度比(i值)和D1波段最大半宽处的全宽度(w值),为表征有机物的键合和官能团组织提供了直接手段,当与地球化学指标相结合时,为重建有机物降解和保存的耦合过程提供了有力的方法。本文对神农架群晚中元古界太子组进行了系统的原位微拉曼分析,并结合C-N同位素、铁形态和氧化还原敏感元素的分析,探讨了其生物降解历史及其控制因素。结果表明,太子组拉曼参数变化与多种地球化学指标关系密切。由于这些样品沉积在相似的沉积环境中,并且经历了相似的热历史,我们认为拉曼参数的变化可能是由依赖氧化还原的有机物微生物降解和初级生产力的扰动引起的。下段和上段下部的高i值和低w值显示出高比例的难降解有机质,这主要是由于氧化条件下的广泛降解所致。相比之下,中部段的i值下降和w值增加表明,由于海洋缺氧加剧,顽固性有机质的比例下降。值得注意的是,在氧化条件下沉积的上段上部i值显著降低,w值显著增加,这可能是由于初级生产力的增加造成的,这与中元古代晚期明显的正δ13Ccarb偏移有关。总之,这些发现突出了氧化还原动力学和微生物活动在调节古代海洋环境中有机物保存中的关键作用。
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引用次数: 0
Citation for the 2025 Clarke Award to Suzanne K. Birner 2025年克拉克奖授予苏珊娜·k·伯纳
IF 5 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2025-11-07 DOI: 10.1016/j.gca.2025.11.009
Elizabeth Cottrell
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引用次数: 0
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Geochimica et Cosmochimica Acta
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