The levels of potentially mutagenic impurities and metabolites, such as aldehydes and ketones, are highly regulated in active pharmaceutical ingredients and must be below a critical safety threshold. Therefore, the ability to detect and identify previously known as well as unknown aldehydes and ketones in drug products is of utmost importance. However, traditional tandem mass spectrometry methods based on collision-activated dissociation (CAD) usually fail in this task as isomeric protonated analytes often fragment in an identical manner, and CAD can cause isomerization of the ions. In this study, selective gas-phase ion-molecule reactions of trimethoxymethylsilane (TMMS) with protonated oxygen-containing analytes were combined with diagnostic CAD to reliably detect all mono- and polyfunctional analytes with aromatic aldehyde and ketone functionalities in a mixture. Various aliphatic and aromatic oxygen-containing analytes, e.g., aldehydes, ketones, carboxylic acids, esters, alcohols, phenols, and amides, were protonated in a linear quadrupole ion trap mass spectrometer, transferred from the ion source into the ion trap, isolated, and allowed to react with TMMS. All protonated analytes produced a stable TMMS adduct and/or an adduct that had lost a methanol molecule. CAD of the latter product ion produced diagnostic fragment ions that correspond to the elimination of a formaldehyde molecule, an ion formally corresponding to the elimination of an oxygen atom from the original protonated analyte, and an ion with mass-to-charge ratio one unit less than the MW of the protonated analyte. These three fragment ions are diagnostic for protonated mono- and polyfunctional analytes with aromatic aldehyde and ketone functionalities, with the exception of pyrrole-2-carboxaldehyde and 2-quinolinecarboxaldehyde. Quantum chemical calculations were employed to delineate the likely mechanisms for the formation of the relevant product ions upon ion-molecule reactions and for the diagnostic fragmentation of specific product ions. This analysis does not require model compounds as the ion-molecule reactions are highly predictable, as opposed to CAD reactions.
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