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Molecular simulation methods of evaporating electrosprayed droplets 蒸发电喷雾液滴的分子模拟方法
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-11-22 DOI: 10.1016/j.ijms.2024.117369
Styliani Consta, Han Nguyen
A robust methodology for molecular simulations of evaporating droplets that enables comparison between the dynamics of the process of interest and the solvent evaporation rate has already been developed (Oh and Consta, 2017). The competition of these dynamics will determine the mass spectrum. However, the success of the approach depends on the accurate and effective treatment of electrostatic forces. Often, in droplet simulations, bulk solution parametrized force-fields are used where the Coulomb forces are directly taken into account with a cut-off distance longer than the droplet diameter. On the one hand this approach is inefficient for large droplets because the computational cost increases as the square of the number of the atomic sites, and on the other hand the force field is slightly different from that has been parametrized for the bulk solution. The effect of this new force field in the conformations of macromolecules is still unknown. Multilevel summation method (MSM) has been developed (Hardy et al. 2015) for the efficient treatment of electrostatic forces in non-periodic and semi-periodic systems, charged or neutral. MSM maintains the same force field in droplets as in the bulk solution. We compare MSM with direct electrostatic treatment in droplets. The comparison shows free energy differences between conformations of short peptides along the radius of gyration order parameter that indicate the need for validation of the direct method. We demonstrate the usage of MSM to study Rayleigh jet formation and charge emission from droplets. We conclude that robust approaches for droplet simulations that can be used with a force field of any complexity are available and can be implemented within many of the available open-source molecular modeling softwares. In the near future, the presented approach may provide reliable reference mass spectra for experiments, where the deviations from the experimental data may reveal valuable information about the processes that take place within the instrument.
目前已经开发出一种用于蒸发液滴分子模拟的强大方法,可以对相关过程的动力学和溶剂蒸发率进行比较(Oh 和 Consta,2017 年)。这些动力学的竞争将决定质谱。然而,该方法的成功取决于对静电力的准确有效处理。在液滴模拟中,通常使用体溶参数化的力场,其中库仑力被直接考虑在内,截止距离长于液滴直径。一方面,这种方法对于大液滴来说效率不高,因为计算成本随着原子位点数量的平方而增加;另一方面,这种力场与体溶液参数化的力场略有不同。这种新力场对大分子构象的影响尚不清楚。为了有效处理非周期性和半周期性系统(带电或中性)中的静电力,人们开发了多级求和法(MSM)(Hardy 等,2015 年)。MSM 使液滴中的力场与主体溶液中的力场保持一致。我们将 MSM 与液滴中的直接静电处理进行了比较。比较结果表明,短肽构象在回旋半径阶参数上存在自由能差异,这表明需要对直接方法进行验证。我们演示了如何使用 MSM 研究液滴的瑞利射流形成和电荷发射。我们的结论是,液滴模拟的稳健方法可以与任何复杂程度的力场一起使用,并且可以在许多可用的开源分子建模软件中实现。在不久的将来,所介绍的方法可能会为实验提供可靠的参考质谱,其中与实验数据的偏差可能会揭示仪器内部过程的宝贵信息。
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引用次数: 0
Reactivity of 2-hydroxyethylhydrazinium nitrate (HEHN) with atomic iridium on graphite 2- 羟乙基肼硝酸盐(HEHN)与原子铱在石墨上的反应性
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-11-21 DOI: 10.1016/j.ijms.2024.117373
Benjamin R. Bilik , Kathryn Foreman , Moritz Blankenhorn , Jerry A. Boatz , Steven D. Chambreau , Kit Bowen
In order to develop chemical kinetics models for the ignition and combustion of ionic liquid-based fuels, identification of the elementary steps in the thermal and catalytic decomposition of components such as 2-hydroxyethylhydrazinium nitrate (HEHN) is needed but is currently not well understood. The first decomposition step in protic ionic liquids such as HEHN is typically the proton transfer from the cation to the anion, resulting in the formation of 2-hydroxyethylhydrazine (HEH) and HNO3. In this investigation, temperature-programmed desorption mass spectrometry (TPD-MS) and x-ray photoelectron spectroscopy (XPS) are used to investigate the heterogeneous catalytic decomposition of HEHN with iridium. HEHN is introduced onto a highly-oriented pyrolytic graphite (HOPG) substrate (approx. 100 monolayers (ML)) and mass-selected iridium atoms (0–10 % ML) are deposited on the HOPG surface. The products can be identified by their masses, and product distributions are monitored as a function of surface temperature and Ir coverage. Formation of product species on the bare HOPG versus on the HOPG with increasing Ir coverage (5, 10 % Ir) indicates that the presence of iridium enhances various reactions. XPS confirms the presence of iridium on the surface and indicates the possible chemical bonding states involved. The products and their possible elementary reaction mechanisms are discussed.
为了开发离子液体燃料点火和燃烧的化学动力学模型,需要确定 2-羟乙基肼硝酸盐(HEHN)等成分的热分解和催化分解的基本步骤,但目前对这些步骤的了解还不够深入。HEHN 等原生离子液体的第一个分解步骤通常是质子从阳离子转移到阴离子,从而形成 2-羟乙基肼(HEH)和 HNO3。本研究采用温度编程解吸质谱法(TPD-MS)和 X 射线光电子能谱法(XPS)来研究 HEHN 与铱的异相催化分解。将 HEHN 引入高取向热解石墨 (HOPG) 基质(约 100 单层 (ML)),然后在 HOPG 表面沉积经过质量选择的铱原子(0-10 % ML)。产物可通过其质量进行识别,并根据表面温度和铱覆盖率的函数对产物分布进行监测。在裸 HOPG 上形成的产物种类与在增加 Ir 覆盖率(5%、10% Ir)的 HOPG 上形成的产物种类相比,表明铱的存在增强了各种反应。XPS 证实了表面铱的存在,并指出了可能涉及的化学键状态。本文讨论了产物及其可能的基本反应机制。
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引用次数: 0
Identification of isomeric glucuronides by electronic excitation dissociation tandem mass spectrometry 利用电子激发解离串联质谱鉴定异构体葡萄糖醛酸盐
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-11-18 DOI: 10.1016/j.ijms.2024.117372
Yang Tang , Zhengwei Chen , Liuxi Chen , Xiaorong Liang , Brian Dean , Donglu Zhang
Glucuronidation is a key phase II metabolic pathway for many drugs and xenobiotics. In pharmaceutical research, performing comprehensive structural analysis to differentiate isomeric glucuronides is critical for understanding the metabolism and reactivity of a drug. However, distinguishing glucuronide isomers using collision-induced dissociation (CID) methods has been challenging, since the glucuronyl moiety is typically lost under collision, leaving no information of the glucuronidation linkage. In this study, we introduce a radical-induced fragmentation method known as electronic excitation dissociation (EED) and has demonstrated its ability to characterize glucuronide structures at the MS2 level without requiring additional derivatizations. We showed EED can generate extensive MS/MS fragments, including several unique fragments that could be relied on to distinguish isomers. Here, we present our results of successfully applying EED for analysis of three common types of isomeric glucuronides, including acyl-, N-, and O-glucuronides. The LC-EED-MS/MS workflow we introduced has great potential for high-throughput analysis of glucuronide mixtures in metabolite identification.
葡萄糖醛酸化是许多药物和异种生物的关键二期代谢途径。在药物研究中,进行全面的结构分析以区分葡萄糖醛酸异构体对于了解药物的代谢和反应性至关重要。然而,使用碰撞诱导解离(CID)方法区分葡萄糖醛酸异构体一直是一项挑战,因为葡萄糖醛酸基通常会在碰撞中消失,从而无法获得葡萄糖醛酸连接的信息。在本研究中,我们介绍了一种称为电子激发解离(EED)的自由基诱导碎片方法,并证明了它能够在 MS2 水平上表征葡萄糖醛酸结构,而无需额外的衍生处理。我们的研究表明,EED 能产生大量的 MS/MS 片段,其中包括几个可用于区分异构体的独特片段。在此,我们介绍了成功应用 EED 分析三种常见的葡萄糖醛酸异构体(包括酰基、N- 和 O-葡萄糖醛酸)的结果。我们介绍的 LC-EED-MS/MS 工作流程对于代谢物鉴定中葡萄糖醛酸混合物的高通量分析具有巨大的潜力。
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引用次数: 0
Improving methods for sample preparation of biological fluids by inductively coupled plasma mass spectrometry 改进电感耦合等离子体质谱法生物液体样品制备方法
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-11-13 DOI: 10.1016/j.ijms.2024.117355
T.K. Nurubeyli , N. Sh. Jafar , G.N. Mammadova
This study presents the results of analyzing biological fluids using Inductively Coupled Plasma Mass Spectrometry (ICP-MS) after applying various sample preparation methods. Optimal conditions for preparing biological fluids have been identified, which help minimize matrix effects and improve measurement accuracy. The most effective methods were selected considering the specifics of matrices and their interactions with analytical equipment. The study evaluated the contributions of spectral interferences to the analytical signal when using ICP-MS. It was found that the physical properties of acid solutions, such as viscosity, surface tension, density, and volatility, significantly affect the analysis results, introducing additional interferences and data distortions. The use of internal standards to eliminate spectral interferences was investigated. Criteria for choosing internal standards were established based on proximity to ionization potentials and mass characteristics, which allows for more accurate result correction and minimizes interference effects. Additionally, it was discovered that polyatomic ions play a significant role in enhancing analyte signals. This influence is due not to the background levels of elements in the samples or reagents, but to ions formed from matrix components in the samples. The study demonstrated that isobaric interferences caused by polyatomic ions significantly impact analytical accuracy. These findings contribute to improving sample preparation and analysis methods for biological fluids using ICP-MS, leading to more reliable and accurate measurements of element concentrations.
本研究介绍了在采用各种样品制备方法后使用电感耦合等离子体质谱法(ICP-MS)分析生物液体的结果。研究确定了制备生物液体的最佳条件,这有助于最大限度地减少基质效应并提高测量精度。考虑到基质的特殊性及其与分析设备的相互作用,选择了最有效的方法。研究评估了使用 ICP-MS 时光谱干扰对分析信号的影响。研究发现,酸溶液的物理特性,如粘度、表面张力、密度和挥发性,会对分析结果产生重大影响,带来额外的干扰和数据失真。研究人员对使用内标来消除光谱干扰进行了调查。根据电离电位和质量特性的接近程度确定了选择内标物的标准,从而可以更准确地校正结果并将干扰效应降至最低。此外,研究还发现多原子离子在增强分析信号方面起着重要作用。这种影响不是由于样品或试剂中元素的背景水平,而是由于样品中基质成分形成的离子。研究表明,多原子离子造成的等压干扰会严重影响分析的准确性。这些发现有助于改进使用 ICP-MS 分析生物液体的样品制备和分析方法,从而获得更可靠、更准确的元素浓度测量结果。
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引用次数: 0
A super-resolution coded aperture miniature mass spectrometer proof-of-concept for planetary science 用于行星科学的超分辨率编码孔径微型质谱仪概念验证
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-11-10 DOI: 10.1016/j.ijms.2024.117368
Tanouir Aloui , Rafael Bento Serpa , Daniel Ross , Scarlett Francini , Chris Wu , Kevin Lee , Kathleen Masse , Justin A. Keogh , Robert Kingston , Heeju Choi , Charles B. Parker , Jennifer C. Stern , M. Bonner Denton , Jeffrey T. Glass , Michael E. Gehm , Jason J. Amsden
Mass spectrometers are essential instruments for in situ analysis of planetary materials. Ideally, a space flight mass spectrometer would have a mass range from ∼10 u to at least 500 u to enable analysis of organic molecules to aid in searching for the requirements for life; capability for high precision isotope ratios of carbon, nitrogen, oxygen, sulfur, and noble gases to understand solar system evolution and functioning; and ability to resolve isobaric interferences at low m/z such as CO and N2 to study planetary atmospheres. Despite the considerable progress in flight mass spectrometry since the 1970s, no single flight mass spectrometer has all these ideal characteristics. In this paper, we present a proof-of-concept super-resolution coded aperture cycloidal miniature mass spectrometer (SR-CAMMS) for planetary science. Design considerations and preliminary results are presented including: a mass range of 10–260 u with resolution of 0.5 u or better; the ability to resolve the isobaric interference between CO and N2 at m/z = 28 u using sampling-super resolution; and the ability to acquire isotope ratios with Poisson statistics limited precision. Thus, the instrument met all design considerations except mass range, which was expected to be 10–500 u; reasons for this discrepancy are discussed in the paper.
质谱仪是对行星材料进行现场分析的基本仪器。理想情况下,太空飞行质谱仪的质量范围应从 10 u 到至少 500 u 不等,以便能够分析有机分子,帮助寻找生命所需的物质;能够分析碳、氮、氧、硫和惰性气体的高精度同位素比值,以了解太阳系的演变和功能;能够分辨 CO 和 N2 等低 m/z 等离子干扰,以研究行星大气。尽管自 20 世纪 70 年代以来飞行质谱技术取得了长足进步,但没有任何一款飞行质谱仪具备所有这些理想特性。在本文中,我们介绍了用于行星科学的超分辨率编码孔径摆线针微型质谱仪(SR-CAMMS)的概念验证。设计考虑因素和初步结果包括:质量范围为 10-260 u,分辨率为 0.5 u 或更高;利用采样-超分辨率解决 m/z = 28 u 处 CO 和 N2 之间的同位干扰的能力;以及获取泊松统计有限精度的同位素比的能力。因此,该仪器满足了除质量范围之外的所有设计要求,预计质量范围为 10-500 u;论文中讨论了出现这一差异的原因。
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引用次数: 0
Richard A. J. O'Hair – A mass spectrometrist who is showing that gas-phase ion chemistry is not just a science but an art 理查德-奥海尔(Richard A. J. O'Hair)--一位质谱分析家,他证明气相离子化学不仅是一门科学,更是一门艺术
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-11-05 DOI: 10.1016/j.ijms.2024.117367
Gavin E. Reid PhD., Victor Ryzhov Ph.D.
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引用次数: 0
Can OPAH ions be a source of CO and HCO in the interstellar medium? Lessons learned from the unimolecular dissociation of dibenzofuran and dibenz[b,f]oxepin radical cations OPAH 离子能否成为星际介质中 CO 和 HCO 的来源?从二苯并呋喃和二苯并[b,f]氧杂卓自由基阳离子的单分子解离中汲取的经验教训
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-11-04 DOI: 10.1016/j.ijms.2024.117366
Nicholas Zinck , Andras Bodi , Paul M. Mayer
Unlike polycyclic aromatic hydrocarbons (PAHs), which are recognized to be key players in interstellar and astrochemistry, less is known about the astrochemical relevance of oxygen-containing PAHs (OPAHs). Small O-containing molecules such as CO and HCO are ubiquitous in the interstellar medium and understanding how OPAHs may be a source for these critical small molecules is important. To this end, we have studied the unimolecular reactions of two ionized OPAHs, dibenzofuran (1+•) and dibenz[b,f]oxepin (2+•) with tandem mass spectrometry (collision-energy resolved dissociation) and imaging photoelectron photoion coincidence spectroscopy (iPEPICO). Collision-induced dissociation (CID) results show the competition between the loss of carbon monoxide (CO) and loss of 29 Da (either the formyl radical (HCO) or sequential H loss), with the latter being the dominant reaction. Rice–Ramsperger–Kassel–Marcus (RRKM) modeling of the iPEPICO data, on the other hand, is consistent with the loss of CO from the parent ion at the dissociative ionization onset, and, in the case of 2+•, sequential H-atom loss from this product. There is significant difference between the two structurally similar systems. In 1+•, dissociation requires around 4 eV of ion internal energy, while only 2.5 eV internal energy is required for 2+• to fragment. Calculations at the CAM-B3LYP/6–311++G(d,p) level of theory were used to examine the reaction pathways. For CO loss in 1+•, the reaction is initiated by a ring expansion followed by contraction of the central ring forming an ion–molecule complex between protonated cyclopenta[3,4]cyclobuta[1,2]benzene and CO. HCO loss is preceded by H migration to a bridging carbon vicinal to the oxygen atom and subsequent ring re-organization to form a low energy cyclopenta[c][1]benzopyran cation. This channel is higher enough in energy to preclude its participation near threshold, but not at higher internal energies reached in the CID experiment, which could therefore involve both sequential H loss and HCO loss. In 2+•, the reaction starts with an opening of the central O-containing ring, lowering the energy demand relative to 1+•.
多环芳烃(PAHs)被认为是星际和天体化学的关键成分,但与之不同的是,人们对含氧多环芳烃(OPAHs)的天体化学相关性知之甚少。CO 和 HCO 等含氧小分子在星际介质中无处不在,因此了解 OPAHs 如何成为这些关键小分子的来源非常重要。为此,我们利用串联质谱法(碰撞能量解析解离)和成像光电子光子巧合光谱法(iPEPICO)研究了两种电离 OPAHs 的单分子反应,即二苯并呋喃(1+-)和二苯并[b,f]氧杂卓平(2+-)。碰撞诱导解离(CID)结果显示,一氧化碳(CO)损失和 29 Da 损失(甲酰基(HCO)或连续 H 损失)之间存在竞争,后者是主要反应。另一方面,对 iPEPICO 数据进行的 Rice-Ramsperger-Kassel-Marcus (RRKM) 建模则表明,在离解电离开始时,母离子会损失 CO,而在 2+- 的情况下,该产物会连续损失 H 原子。这两种结构相似的体系之间存在显著差异。在 1+- 中,解离需要约 4 eV 的离子内能,而 2+- 只需要 2.5 eV 的离子内能就能产生碎片。在 CAM-B3LYP/6-311++G(d,p) 理论水平上进行的计算用于研究反应途径。对于 1+- 中 CO 的损失,反应开始于环的扩张,然后是中心环的收缩,在质子化的环戊二烯并[3,4]环丁二烯并[1,2]苯和 CO 之间形成离子-分子复合物。在 HCO 丢失之前,H 会迁移到与氧原子邻接的桥碳上,随后环重新组织,形成低能环戊并[c][1]苯并吡喃阳离子。这一通道的能量较高,足以排除其在临界值附近参与反应的可能性,但在 CID 实验中达到的较高内部能量下则不然,因此可能涉及 H 的连续损失和 HCO 的损失。在 2+- 中,反应以打开中央含 O 环开始,相对于 1+- 降低了能量需求。
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引用次数: 0
Complexation of diserinol isophthalamide with phosphorylated biomolecules in electrospray ionization mass spectrometry 电喷雾离子化质谱中异苯二甲酰胺与磷酸化生物分子的络合反应
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-10-26 DOI: 10.1016/j.ijms.2024.117364
Madeline Schultz, Neil A. Ellis, Nwanne D. Banor, Daniel A. Thomas
Electrospray ionization (ESI) enables gentle transfer of biomolecules from solution to vacuum, facilitating the study of biomolecular structure under highly controlled conditions. However, biomolecules are desolvated during the ESI process, and the loss of ionic hydrogen bonds to solvent molecules can drive structural rearrangement, most prominently at solvent-exposed charge sites. Microsolvation reagents can bind to these bare charge sites in ESI mass spectrometry (ESI–MS) experiments, providing alternative intermolecular interaction partners. Previously, 18-crown-6 was shown to be an effective reagent for binding to cationic monoalkylammonium residues. More recently, diserinol isophthalamide (DIP) was reported as an analogous anionic microsolvation reagent, primarily for carboxylate residues of small model peptides. Herein, we expand upon this work to examine the complexation of DIP, 1,1’-(1,2-phenylene)bis(3-phenylurea) (PBP), and triclocarban (TCC) with molecules featuring a terminal or linking phosphate moiety. Specifically, using ESI–MS, we assess the binding of these reagents with dimethyl phosphate (DMP), cyclic adenosine monophosphate (cAMP), dibutyryl cAMP, RNA dinucleotides ApU and CpG, and angiotensin II phosphate (DRVpYIHPF). For DMP, the smallest target molecule, reagents TCC, PBP and DIP showed favorable adduction. However, for larger systems, PBP and TCC showed reduced complexation, which was attributed to steric hindrance from the terminal aromatic moieties of PBP and the limited hydrogen bonding network of TCC. Overall, of the three reagents, DIP showed the most consistent performance for anionic microsolvation of phosphate groups, facilitating future studies of gas-phase biomolecular structure and the effects of microsolvation.
电喷雾离子化(ESI)可将生物大分子从溶液温和地转移到真空中,有助于在高度受控的条件下研究生物分子结构。然而,生物大分子在电喷雾离子化过程中会脱溶,与溶剂分子失去离子氢键会导致结构重排,其中最突出的是暴露在溶剂中的电荷位点。微溶解试剂可以在 ESI 质谱分析(ESI-MS)实验中与这些裸露的电荷位点结合,提供替代的分子间相互作用伙伴。此前,18-crown-6 已被证明是与阳离子单烷基铵残基结合的有效试剂。最近,有报道称异酞胺二乙醇(DIP)是一种类似的阴离子微溶胶试剂,主要用于小型模型肽的羧酸残基。在此,我们将进一步研究 DIP、1,1'-(1,2-亚苯基)双(3-苯基脲) (PBP) 和三氯卡班 (TCC) 与具有末端或连接磷酸盐分子的复合物。具体来说,我们使用 ESI-MS 评估了这些试剂与磷酸二甲酯 (DMP)、环磷酸腺苷 (cAMP)、二丁酰基 cAMP、RNA 二核苷酸 ApU 和 CpG 以及血管紧张素 II 磷酸酯 (DRVpYIHPF) 的结合情况。对于最小的目标分子 DMP,试剂 TCC、PBP 和 DIP 显示出良好的吸附效果。然而,对于较大的系统,PBP 和 TCC 的络合作用有所降低,原因是 PBP 的末端芳香分子和 TCC 的有限氢键网络产生了立体阻碍。总之,在这三种试剂中,DIP 在磷酸基团的阴离子微溶胶化方面表现最为稳定,有助于今后对气相生物分子结构和微溶胶化效应的研究。
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引用次数: 0
Unravelling the favorability of radical-directed xn-H2O dissociation at serine and threonine 揭示丝氨酸和苏氨酸处自由基定向 xn-H2O 解离的有利条件
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-10-26 DOI: 10.1016/j.ijms.2024.117363
Evan E. Hubbard, Ryan R. Julian
Among tandem-mass-spectrometry approaches, radical-directed dissociation (RDD) is uniquely sensitive to molecular structure because the location and types of cleavage observed are dictated by radical migration propensities. Although the underlying chemistry for many RDD fragmentation pathways has been previously explained, xn-H2O fragment ions that occur exclusively at serine and threonine residues, have not been examined in detail. Creation of this fragment type inherently requires two dissociation events, one to lose water and another to cleave the peptide backbone. Double dissociations are typically disfavored relative to pathways requiring a single cleavage, yet xn-H2O fragment ions are abundant in RDD spectra. To understand why this fragmentation pathway is favorable, we used a combination of computational chemistry and experiments on peptides with a variety of covalent modifications. Our results explore the energetics, location, and migration of the radical in each step of the mechanism, revealing that favorability can be attributed to the stability of the required radical intermediates and access to low-energy pathways connecting them. Ultimately, the abundant nature of xn-H2O ions and the selectivity associated with their exclusive generation at Ser/Thr provides high value sequence information in RDD experiments.
在串联质谱分析方法中,自由基定向解离(RDD)对分子结构具有独特的敏感性,因为观察到的裂解位置和类型是由自由基迁移倾向决定的。虽然以前已经解释过许多 RDD 断裂途径的基本化学原理,但还没有详细研究过专门发生在丝氨酸和苏氨酸残基上的 xn-H2O 片段离子。产生这种片段类型本质上需要两个解离事件,一个是失水,另一个是裂解肽骨。相对于需要单次裂解的途径,双重解离通常是不受欢迎的,但 xn-H2O 片段离子在 RDD 图谱中却很丰富。为了了解为什么这种裂解途径是有利的,我们结合使用了计算化学和对具有各种共价修饰的肽进行的实验。我们的研究结果探讨了该机制每个步骤中自由基的能量、位置和迁移,揭示了该机制的有利之处在于所需的自由基中间体的稳定性以及连接它们的低能量途径。最终,xn-H2O 离子的丰富性及其在 Ser/Thr 独家生成的选择性为 RDD 实验提供了高价值的序列信息。
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引用次数: 0
Gas phase proton affinities of proline-containing peptides. 1: ProGly, ProAla, ProVal, ProLeu, ProIle, and ProPro 含脯氨酸肽的气相质子亲和力。1:ProGly、ProAla、ProVal、ProLeu、ProIle 和 ProPro
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-10-24 DOI: 10.1016/j.ijms.2024.117352
Henry Cardwell , Paul Acoria , Alexis Brender A Brandis , Kathy Huynh , Madeleine Lamb , Sophie Messinger , Daria Moody , Laurel Nicks , Hao Qian , Marcus Quint , Trinh Ton , Anna Grace Towler , Michael Valasquez , Jennifer Poutsma , John C. Poutsma
The gas-phase proton affinities (PA) for a series of proline-containing dipeptides have been measured in an ESI triple quadrupole instrument using the extended kinetic method. Proton affinities for ProGly (1), ProAla (2), ProVal (3), ProLeu (4), ProIle (5), and ProPro (6) were determined to be 969.6 ± 7.8, 990.4 ± 7.7, 987.6 ± 7.9, 982.8 ± 8.0, 988.8 ± 10.1, and 996.5 ± 12.2 kJ/mol, respectively. Predictions for the proton affinities for 16 were also obtained through isodesmic calculations at the B3LYP/6-311++G(d,p)//B3LYP/6-31+G(d) level of theory. The predicted proton affinities for 1 and 6 of 966.9 and 991.0 kJ/mol are in agreement with the experimental values. However, the predicted proton affinities for 25 of 973.5, 975.9, 975.7, and 975.9 are between 8 and 15 kJ/mol lower than the experimental values. Additional calculations with a larger basis set (B3LYP/6-311++G(2df,2p), inclusion of dispersion (B3LYP-D3/6-311++G(d,p)), switching to second order perturbation theory (MP2/6-31++G(d,p) and MP2/6-311++G(2df,2p), or switching density functional (M06-2x/6-311++G(d,p) and M06-2x/6-311++G(2df,2p) show only modest changes in derived thermochemistry lending support to the original calculations. We recommend using the experimental proton affinities for ProGly and ProPro and using the calculated values for ProAla, ProVal, ProLeu, and ProIle with the experimental proton affinities as upper limits.
采用扩展动力学方法,在 ESI 三重四极杆仪器上测量了一系列含脯氨酸二肽的气相质子亲和力(PA)。ProGly (1)、ProAla (2)、ProVal (3)、ProLeu (4)、ProIle (5) 和 ProPro (6) 的质子亲和力分别为 969.6 ± 7.8、990.4 ± 7.7、987.6 ± 7.9、982.8 ± 8.0、988.8 ± 10.1 和 996.5 ± 12.2 kJ/mol。通过在 B3LYP/6-311++G(d,p)//B3LYP/6-31+G(d) 理论水平上进行等效计算,还得到了 1-6 质子亲和力的预测值。预测 1 和 6 的质子亲和力分别为 966.9 和 991.0 kJ/mol,与实验值一致。然而,2-5 的质子亲和力预测值为 973.5、975.9、975.7 和 975.9,比实验值低 8 至 15 kJ/mol。使用更大的基集(B3LYP/6-311++G(2df,2p))、包含色散(B3LYP-D3/6-311++G(d,p))、切换到二阶扰动理论(MP2/6-31++G(d、p)和 MP2/6-311++G(2df,2p) 或切换密度泛函(M06-2x/6-311++G(d,p) 和 M06-2x/6-311++G(2df,2p)),结果表明推导出的热化学结果变化不大,支持了原始计算。我们建议使用 ProGly 和 ProPro 的实验质子亲和力,并使用 ProAla、ProVal、ProLeu 和 ProIle 的计算值以及实验质子亲和力作为上限。
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International Journal of Mass Spectrometry
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