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Interrogation of three-finger toxin and phospholipase A2 higher order structures from the forest cobra (Naja melanoleuca) venom using a mass spectrometric approach 利用质谱方法研究森林眼镜蛇(Naja melanoleuca)毒液中的三指毒素和磷脂酶 A2 的高阶结构
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-09-24 DOI: 10.1016/j.ijms.2024.117346
Snake venoms are composed of bioactive proteins and peptides from various toxin families and elicit potent pharmacological activity. There is great interest in characterising these venom proteins for the development of effective antivenom treatment as well as utilisation for biomedical and therapeutic applications. However, a thorough structural understanding of the snake venom proteins is necessary. Higher-order protein complexes are known to form in snake venoms and lend structural and functional diversity, often eliciting greater activity than the sum of monomeric protein species. Despite the significance, the nature of these protein complexes is extremely underexplored. In this study, we demonstrate the use of mass spectrometry (MS)-based strategies to explore the toxins at a quaternary level in the venom from the medically significant forest cobra (Naja melanoleuca). Small toxins, mainly three finger toxins (3FTxs) and phospholipase A2s (PLA2s), were identified by comparison of intact and chemically reduced masses using matrix-assisted laser desorption ionisation (MALDI-MS) profiling. Notably, interrogation of these small toxins by native MS and collision-induced dissociation revealed the presence of various non-covalent 3FTx and PLA2 dimers, providing insight on the higher-order protein structures for a variety of N. melanoleuca toxins using a MS-based approach. Furthermore, phospholipid substrate specificity of N. melanoleuca PLA2 enzymes were explored, capturing the indiscriminate activity of these PLA2s towards a range of phospholipid classes for the first time.
蛇毒由来自不同毒素家族的生物活性蛋白质和肽组成,具有强大的药理活性。为了开发有效的抗蛇毒血清治疗方法,以及将蛇毒应用于生物医学和治疗领域,人们对研究这些蛇毒蛋白的特征有着浓厚的兴趣。然而,彻底了解蛇毒蛋白的结构是必要的。众所周知,蛇毒中会形成高阶蛋白复合物,这种复合物具有结构和功能多样性,通常比单体蛋白的总和具有更强的活性。尽管意义重大,但这些蛋白质复合物的性质却极少被探索。在这项研究中,我们展示了如何利用基于质谱的策略来探索具有重要医学价值的森林眼镜蛇(Naja melanoleuca)毒液中的四级毒素。利用基质辅助激光解吸电离(MALDI-MS)分析法,通过比较完整质量和化学还原质量,确定了小毒素,主要是三指毒素(3FTxs)和磷脂酶 A2s(PLA2s)。值得注意的是,通过本征质谱和碰撞诱导解离对这些小毒素进行检测,发现了各种非共价的 3FTx 和 PLA2 二聚体的存在,从而利用基于质谱的方法深入了解了多种 N. melanoleuca 毒素的高阶蛋白质结构。此外,研究人员还探索了 N. melanoleuca PLA2 酶的磷脂底物特异性,首次捕获了这些 PLA2 对一系列磷脂类别的无差别活性。
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引用次数: 0
Low pressure-alternating current glow discharge ion source for mass spectrometry 用于质谱分析的低压交变电流辉光放电离子源
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-09-20 DOI: 10.1016/j.ijms.2024.117343
For social security and safety, the sensitive explosives detection is crucial. Mass spectrometry (MS), a unique technique that may immediately reveal information about molecular structure, is considered as the “gold standard” in analytical science. Both science and technology now frequently employ MS-based techniques. This study developed an air-based low-pressure alternating current glow discharge (LP-acGD) ion source for MS to investigate its ionization efficiency in both positive and negative ion modes. The LP-acGD ion source gave O3−•, CO3−•, HCO3, HCO4, NO2 and NO3 ions that appeared at m/z 48, 60, 61, 77, 46 and 62, respectively in negative ion mode, some of these contributed to the formation of adduct ions. In positive ion mode, only protonated acetone, [Acetone + H]+ m/z 59, was detected at the beginning of the total ion current when 15 and 5 V were applied at orifices 1 and 2, respectively. However, the background ion signals were stabilized by protonated acetone and water cluster ions [(H2O)n + H]+ (n = 3, 4) as applied voltages were 40 and 0 V at orifices 1 and 2, respectively. Hydrogen peroxide, 3,4-dinitrotoluene, nitric acid, hexafluorobenzene, triacetone triperoxide and basil leaf were taken as model samples to investigate the efficiency of the ion source. In negative ion mode, H2O2 and HNO3 gave [H2O2+O2]- m/z 66 and [HNO3+NO3]- m/z 125, whereas 3,4-DNT and HFB exhibited mostly molecular ions. In positive ion mode, TATP yielded fragment ions of [C3H6O2+H]+ m/z 75 and [C3H6O3+H]+ m/z 91. The present method has been validated for detection and quantification of H2O2 and HNO3. Ion formation mechanisms are also discussed.
对于社会安全和安保而言,灵敏的爆炸物检测至关重要。质谱法(MS)是一种可立即揭示分子结构信息的独特技术,被视为分析科学的 "黄金标准"。目前,科学和技术领域都经常采用基于 MS 的技术。本研究开发了一种用于 MS 的空气基低压交流辉光放电(LP-acGD)离子源,以研究其在正离子和负离子模式下的电离效率。在负离子模式下,LP-acGD 离子源产生的 O3-、CO3-、HCO3-、HCO4-、NO2- 和 NO3- 离子分别出现在 m/z 48、60、61、77、46 和 62 处,其中一些离子促成了加成离子的形成。在正离子模式下,当在孔口 1 和孔口 2 分别施加 15 V 和 5 V 电压时,只有质子化的丙酮([丙酮 + H]+ m/z 59)在总离子流开始时被检测到。然而,当在孔口 1 和孔口 2 分别施加 40 V 和 0 V 的电压时,质子化的丙酮和水簇离子[(H2O)n + H]+ (n = 3, 4)稳定了背景离子信号。以过氧化氢、3,4-二硝基甲苯、硝酸、六氟苯、三丙酮三过氧化物和罗勒叶为模型样品,研究离子源的效率。在负离子模式下,H2O2 和 HNO3 产生了 [H2O2+O2]- m/z 66 和 [HNO3+NO3]- m/z125,而 3,4-DNT 和 HFB 则主要是分子离子。在正离子模式下,TATP 产生的碎片离子为 [C3H6O2+H]+ m/z 75 和 [C3H6O3+H]+ m/z 91。该方法在检测和定量 H2O2 和 HNO3 方面得到了验证。此外,还讨论了离子形成机制。
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引用次数: 0
Making OzID go FFASTer: Combining stable-isotope tagging with ozone-induced dissociation to uncover changes in fatty acid unsaturation within neurosecretory cells 让臭氧诱导解离技术(OzID)成为脂肪酸快速分析仪(FFASTer):将稳定同位素标记与臭氧诱导解离相结合,揭示神经分泌细胞内脂肪酸不饱和度的变化
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-09-18 DOI: 10.1016/j.ijms.2024.117342
Despite lipids providing a major contribution to the mass of the brain, at the molecular level, the brain lipidome remains incompletely described and the functions of many of the species identified to date are unknown. Recently, unusual unsaturated fatty acids –with carbon-carbon double bonds in positions not predicted by canonical lipid metabolism– were identified in the mouse brain. The extent to which these unusual lipids contribute to neurochemical processes presents a significant gap in knowledge that is challenging to close due to technological impediments to the detection and tracing of such novel fatty acids. Here we deploy state-of-the-art mass spectrometric methods coupled with diagnostic ion-molecule reactions in the form of ozone-induced dissociation to enable detection and relative quantification of unsaturated fatty acids in an in vitro brain model based on the PC12 cell line. This approach revealed the presence of abundant populations of non-canonical fatty acids, including FA 16:1n-10,cis (sapienic acid) and FA 18:1n-10,cis (dihomosapienic acid), in extracts from PC-12 cell lines. Neither of these fatty acids have previously been reported in neurons or neurosecretory-like cells, with both demonstrated to increase between 2 and 4-fold in relative abundance upon active stimulation.
尽管脂质对大脑的质量做出了重大贡献,但在分子水平上,大脑脂质组的描述仍然不完整,而且迄今发现的许多种类的功能尚不清楚。最近,在小鼠大脑中发现了不寻常的不饱和脂肪酸--其碳碳双键的位置与典型脂质代谢所预测的位置不同。这些不寻常的脂质对神经化学过程的贡献程度是一个重大的知识空白,由于检测和追踪这类新型脂肪酸的技术障碍,弥补这一空白具有挑战性。在这里,我们采用最先进的质谱方法,结合臭氧诱导解离形式的诊断性离子分子反应,在基于 PC12 细胞系的体外脑模型中对不饱和脂肪酸进行了检测和相对定量。这种方法揭示了在 PC-12 细胞系的提取物中存在大量的非典型脂肪酸,包括 FA 16:1n-10,cis(sapienic acid)和 FA 18:1n-10,cis(dihomosapienic acid)。这两种脂肪酸以前都没有在神经元或神经分泌样细胞中出现过,这两种脂肪酸在活性刺激下的相对丰度都会增加 2 到 4 倍。
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引用次数: 0
Determination of dimethyl sulfate genotoxic impurity in pantoprazole sodium sesquihydrate by derivatization method and UPLC/MS 利用衍生化方法和 UPLC/MS 测定倍半水合泮托拉唑钠中的硫酸二甲酯基因毒性杂质
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-09-14 DOI: 10.1016/j.ijms.2024.117330

In this study, a new method has been developed and, the method has been validated to analyze dimethyl sulfate (DMS) which known as a genotoxic impurity. DMS has been detected in trace levels within the drug substance pantoprazole sodium sesquihydrate using the derivatization method. Triethylamine has been used as derivatization reagent. Due to the highly polar nature of the derivatization product, which is a quaternary ammonium ion, a polar retention Hilic column has been used for chromatographic separation. The Waters QDA detector has been used in the single ion recording (SIR) mode at m/z 116 for the detection of the quaternary ammonium ion. In this study, the recovery rates have been achieved within the range of 96.46–105.98%. The LOD has been determined as 1.94E-07 mg/mL, and the LOQ has been determined as 6.46E-07 mg/mL. From the results, it can be said that the improved method in this study, would enables fast and reliable solutions for routine quality control analyses for DMS in API companies that especially is producing PSS.

本研究开发了一种新方法,并对该方法进行了验证,以分析被称为基因毒性杂质的硫酸二甲酯(DMS)。使用衍生化方法检测了药物泮托拉唑钠倍半水合物中的痕量 DMS。三乙胺被用作衍生试剂。由于衍生产物(季铵离子)具有高极性,因此使用了极性保留 Hilic 色谱柱进行色谱分离。沃特斯 QDA 检测器采用单离子记录(SIR)模式,在 m/z 116 处检测季铵离子。本研究的回收率在 96.46-105.98% 之间。LOD 为 1.94E-07 mg/mL,LOQ 为 6.46E-07 mg/mL。从结果来看,本研究中改进的方法可以为生产 PSS 的原料药公司的 DMS 常规质量控制分析提供快速可靠的解决方案。
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引用次数: 0
Evaluation of MagneTOF detector signals for the determination of many-ion bunches 评估用于测定多离子束的 MagneTOF 检测器信号
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-09-10 DOI: 10.1016/j.ijms.2024.117337

In preparation of space-change studies a MagneTOF detector is evaluated for bunches with a wide range of ion numbers. The detector is calibrated based on the comparison between single-ion counting and ion-bunch-signal integration. This allows to determine up to several ten thousands of ions in a bunch with a FWHM of about 700ns, the integrated signal of which increases linearly with the ion number. Furthermore, this detector limit can be circumvented using transmission-limiting elements in front of the detector. Based on this, ion bunches are investigated up to several million ions, which are prepared with a linear Paul trap. Thus, in addition to the MagneTOF detector this trap is characterized with respect to its space-charge limits at low potential-well depth.

在准备空间变化研究时,对一个 MagneTOF 检测器进行了评估,该检测器适用于各种离子群。根据单离子计数和离子束信号积分之间的比较对探测器进行了校准。这样就能以约 700ns 的全宽均方根(FWHM)测定离子束中的数万个离子,其积分信号随离子数的增加而线性增加。此外,还可以利用探测器前的传输限制元件来规避探测器的这一限制。在此基础上,利用线性保罗阱制备的离子束可研究多达数百万个离子。因此,除了 MagneTOF 检测器之外,这种阱的特点还在于其在低电位井深度时的空间电荷限制。
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引用次数: 0
A multi-reflection time-of-flight analyzer with a long focus lens 带长焦镜头的多反射飞行时间分析仪
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-08-30 DOI: 10.1016/j.ijms.2024.117329

Multi-reflection time-of-flight (MR-ToF) analyzers must control the transversal ion dispersion, orthogonal to the axis of reflection, conventionally via periodic refocusing, or more recently the shaped electrode structure adopted by the Astral analyzer. In principle, the complexity of the dispersion control on every oscillation may be avoided at a cost of a smaller number of oscillations, during which the dispersion doesn't exceed the limit of unrecoverable overlap. A method of dispersion control has been demonstrated experimentally and in simulation, whereby the ion beam is configured by a long focus trans-axial lens made of a pair of quasi-elliptical plates mounted above and below the ion beam, in order to optimize the spatial spread of the ions at a distant detector. The collimation concept was shown to effectively control beam expansion. For experimental confirmation, a prototype Astral analyzer was modified, and resolving power above 70k demonstrated.

多反射飞行时间(MR-ToF)分析仪必须控制正交于反射轴的横向离子色散,传统的方法是通过周期性再聚焦,或者最近 Astral 分析仪采用的异形电极结构。原则上,每次振荡的色散控制的复杂性可以通过减少振荡次数来避免,在振荡过程中色散不会超过无法恢复的重叠极限。实验和仿真证明了一种色散控制方法,即离子束由安装在离子束上方和下方的一对准椭圆形板组成的长焦距跨轴透镜配置,以优化离子在远处探测器上的空间扩散。实验证明,准直概念可有效控制离子束的扩展。为了进行实验确认,对 Astral 分析仪的原型进行了改装,并展示了高于 70k 的分辨能力。
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引用次数: 0
Assessing the additivity of mass distribution-based isotopic shifts in high-resolution cyclic ion mobility separations 评估高分辨率循环离子迁移率分离中基于质量分布的同位素偏移的可加性
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-08-22 DOI: 10.1016/j.ijms.2024.117328

Recent advancements in high-resolution ion mobility spectrometry-mass spectrometry (IMS-MS) have enabled the separation of isotopologues and isotopomers based on their mass distribution-based isotopic shifts (i.e., changes in center of mass and moments of inertia). To better understand the fundamental nature of these isotopic shifts, we investigated whether they were additive in nature by introducing varying isotopic substitutions (e.g., 13C, 2H/D, and 81Br) through either hydrogen deuterium exchange or permethylation. From there, we measured the relative arrival times between light and heavy isotopologues with high-resolution cyclic ion mobility separations. Globally, we observed that the isotopic shifts were approximately additive in nature regardless of the molecule system or specific isomer studied. Furthermore, we discovered that additivity occurs in the isotopic shifts irrespective of the absolute shift, potentially indicating this observation may be more global in nature. We believe that our findings will serve to better understand the fundamental nature of mass distribution-based isotopic shifts and will inform theoretical ion mobility calculations in the future.

高分辨率离子迁移谱-质谱分析法(IMS-MS)的最新进展,使我们能够根据基于质量分布的同位素位移(即质心和惯性矩的变化)来分离同位素和同素异形体。为了更好地了解这些同位素位移的基本性质,我们通过氢氘交换或过甲基化引入不同的同位素置换(如 13C、2H/D 和 81Br)来研究它们是否具有相加性。在此基础上,我们利用高分辨率循环离子迁移率分离法测量了轻同位素和重同位素之间的相对到达时间。总体而言,我们观察到,无论研究的分子体系或具体异构体如何,同位素位移都具有近似相加的性质。此外,我们还发现,无论绝对位移如何,同位素位移都具有相加性,这可能表明这一观察结果更具有全球性。我们相信,我们的发现将有助于更好地理解基于质量分布的同位素位移的基本性质,并为今后的理论离子迁移率计算提供参考。
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引用次数: 0
A trapped ion mobility enabled Fourier transform ion cyclotron resonance mass spectrometer for infrared ion spectroscopy at FELIX 用于红外离子光谱分析的傅立叶变换离子回旋共振质谱仪(FELIX
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-08-17 DOI: 10.1016/j.ijms.2024.117323

We report the installation of a new infrared ion spectroscopy platform at the free-electron laser facility FELIX, based on a Bruker SolariX Fourier Transform ion cyclotron resonance (FT-ICR) mass spectrometer equipped with a trapped ion mobility spectrometry (TIMS) stage. The instrument allows one to record infrared multiple-photon dissociation (IRMPD) spectra for mass and mobility selected ions, produced by a range of ion sources. We describe two strategies to achieve consistent overlap between the laser beam and the ion packet. Removing the original ECD cathode significantly enhanced the IR transmission and the overlap with the ion cloud, resulting in improved IRMPD yield per pulse. Enhancement of the photodissociation yield is observed when multiple pulses are used, as there is negligible collisional deactivation in the ultra-high vacuum trapping region of the ICR cell. We compare IRMPD spectra recorded on the new platform with IRMPD spectra of the same species recorded on one of our 3D-quadrupole ion trap platforms. We demonstrate the instrument’s performance using a sample containing a mixture of two trisaccharides. Mobility selection allows us to record individual IR spectra for the two isomeric species. This multi-modal platform, encompassing liquid chromatography, ion mobility spectrometry, ultra-high resolution (tandem) mass spectrometry, infrared ion spectroscopy (and soon also mass spectrometry imaging), is available to users at the FELIX facility.

我们报告了在自由电子激光设备 FELIX 上安装新的红外离子光谱平台的情况,该平台基于布鲁克 SolariX 傅立叶变换离子回旋共振(FT-ICR)质谱仪,并配备了捕获离子迁移率光谱仪(TIMS)台。该仪器可记录一系列离子源产生的质量和迁移率选定离子的红外多重光子解离(IRMPD)光谱。我们介绍了实现激光束和离子包之间一致重叠的两种策略。移除原始 ECD 阴极可显著增强红外传输和与离子云的重叠,从而提高每个脉冲的 IRMPD 产率。由于在 ICR 单元的超高真空捕获区域中碰撞失活可以忽略不计,因此在使用多个脉冲时可以观察到光解离产率的提高。我们将在新平台上记录的 IRMPD 光谱与在我们的一个 3D 四极杆离子阱平台上记录的同种物质的 IRMPD 光谱进行了比较。我们使用含有两种三糖混合物的样品演示了仪器的性能。通过选择迁移率,我们可以分别记录两种异构体的红外光谱。这种多模式平台包括液相色谱法、离子迁移谱法、超高分辨率(串联)质谱法、红外离子光谱法(不久还将包括质谱成像),可供 FELIX 设备的用户使用。
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引用次数: 0
The IJMS Young Scientist Feature: A special article collection featuring perspectives and critical insights from early career mass spectrometrists around the globe IJMS 青年科学家特辑:特别文章集,收录来自全球各地早期职业质谱学家的观点和重要见解
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-08-17 DOI: 10.1016/j.ijms.2024.117327
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引用次数: 0
Structures and unimolecular chemistry of alkali metal cation complexes with glutathione in the gas phase 碱金属阳离子与谷胱甘肽气相络合物的结构和单分子化学性质
IF 1.6 3区 化学 Q3 PHYSICS, ATOMIC, MOLECULAR & CHEMICAL Pub Date : 2024-08-13 DOI: 10.1016/j.ijms.2024.117309

This study investigates the unimolecular reactions of glutathione complexes with alkali metal cations in the gas phase through sustained off-resonance irradiation collision-induced dissociation and examines their structures using a combination of infrared multiphoton dissociation spectroscopy and computational techniques. Under soft CID conditions, glutathione complexes with charge-dense cations such as Li⁺, Na⁺, and K⁺ show significant fragmentation of glutathione, while complexes with heavier cations, Rb⁺ and Cs⁺, primarily undergo loss of glutathione. This behavior is attributed to the stronger non-covalent binding between smaller metal cations and glutathione, which competes with the dissociation thresholds of covalent interactions within the peptide complex. Using CREST, a tool for determining trial structures which were submitted to density functional theory calculations, a thorough investigation of the conformational space revealed many possible structures, including pentacoordinated structures for the Na⁺ and K⁺ complexes, as well as tetra-tri-, bi-, and monocoordinated structures along with zwitterionic structures for all metal cation/GSH complexes. For all alkali metal cation complexes, the thermodynamically most stable structures were found to be tetracoordinated A-type structures where the metal cation is bound to the amine nitrogen and three of the carbonyl oxygens—all except O2, the amide between glycine and cysteine. These computed infrared spectra for these lowest energy complexes were also consistent with the experimental vibrational spectra in the fingerprint region. Based on relative energies and the comparison of computed and experimental infrared spectra in the fingerprint region, the tetracoordinate A-type structures are concluded to be the dominant forms of the [M(GSH)]+ complexes in the gas phase.

本研究通过持续非共振辐照碰撞诱导解离,研究了谷胱甘肽络合物与碱金属阳离子在气相中的单分子反应,并结合红外多光子解离光谱和计算技术研究了它们的结构。在软 CID 条件下,谷胱甘肽与电荷密集阳离子(如 Li⁺、Na⁺ 和 K⁺)的配合物显示出谷胱甘肽的显著碎片化,而与较重阳离子(如 Rb⁺和 Cs⁺)的配合物则主要发生谷胱甘肽的损失。这种行为归因于较小的金属阳离子与谷胱甘肽之间较强的非共价结合,这与肽复合物内共价相互作用的解离阈值相竞争。利用 CREST(一种用于确定试验结构并将其提交密度泛函理论计算的工具)对构象空间进行了深入研究,发现了许多可能的结构,包括 Na⁺ 和 K⁺ 复合物的五配位结构,以及所有金属阳离子/GSH 复合物的四-三配位、双配位和单配位结构以及齐聚物结构。对于所有碱金属阳离子络合物,热力学上最稳定的结构是四配位 A 型结构,其中金属阳离子与胺氮和三个羰基氧结合--除了甘氨酸和半胱氨酸之间的酰胺 O2。这些能量最低的复合物的红外光谱计算结果也与指纹区的实验振动光谱一致。根据相对能量以及指纹区计算红外光谱与实验红外光谱的比较,可以断定四配位 A 型结构是气相中 [M(GSH)]+ 复合物的主要形式。
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引用次数: 0
期刊
International Journal of Mass Spectrometry
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