Pub Date : 2025-11-01Epub Date: 2025-08-08DOI: 10.1016/j.ijms.2025.117507
O.V. Lushchikova , M. Ončák , J. Reichegger , B. Felsner , D.K. Böhme , P. Scheier
Experimental mass-spectrometric results are reported which demonstrate that ionized helium nanodroplets (at T < 10 K) doped with the coinage metal atoms M = Cu, Ag or Au, and then exposed to molecular hydrogen, provide an abundance of singly and multiply hydrogenated coinage metal cations M+(H2)n and MH+(H2)n with n up to 25 and beyond. We explore here the information provided by observed distributions in the measured intensities of these ligated ions with n = 1–6 and use ab initio quantum chemical calculations to extract fundamental insights into variations in ligation energies and structures with increasing H2 ligation and going down the Periodic Table (M+ = Cu+, Ag+ and Au+) with an eye on the role of relativistic contributions to the ligation energies expected with the increasing nuclear charge of M+. “Magic” numbers of H2 additions with relatively high intensity are apparent among the first 5, especially the first 2, H2 additions. Very substantial relativistic enhancements of the third over the second-row ligation energies were computed, especially for Au+: 83 % and 60 % respectively, for the first two H2 ligands intimately bonded to Au+, and 19 % and 67 % respectively, for the addition of the first two H2 ligands to AuH+. Relativistic enhancements for the addition of a third H2 ligand and beyond were found to be essentially negligible.
{"title":"Hydrogenating atomic coinage metal cations (group 11) with H2 on charged He droplets (T<10 K) doped with metal Atoms: Early stages, ligation energies, core structures, group variations, and relativistic effects","authors":"O.V. Lushchikova , M. Ončák , J. Reichegger , B. Felsner , D.K. Böhme , P. Scheier","doi":"10.1016/j.ijms.2025.117507","DOIUrl":"10.1016/j.ijms.2025.117507","url":null,"abstract":"<div><div>Experimental mass-spectrometric results are reported which demonstrate that ionized helium nanodroplets (at T < 10 K) doped with the coinage metal atoms M = Cu, Ag or Au, and then exposed to molecular hydrogen, provide an abundance of singly and multiply hydrogenated coinage metal cations M<sup>+</sup>(H<sub>2</sub>)<sub><em>n</em></sub> and MH<sup>+</sup>(H<sub>2</sub>)<sub><em>n</em></sub> with <em>n</em> up to 25 and beyond. We explore here the information provided by observed distributions in the measured intensities of these ligated ions with <em>n</em> = 1–6 and use <em>ab initio</em> quantum chemical calculations to extract fundamental insights into variations in ligation energies and structures with increasing H<sub>2</sub> ligation and going down the Periodic Table (M<sup>+</sup> = Cu<sup>+</sup>, Ag<sup>+</sup> and Au<sup>+</sup>) with an eye on the role of relativistic contributions to the ligation energies expected with the increasing nuclear charge of M<sup>+</sup>. “Magic” numbers of H<sub>2</sub> additions with relatively high intensity are apparent among the first 5, especially the first 2, H<sub>2</sub> additions. Very substantial relativistic enhancements of <em>the third over the second-row</em> ligation energies were computed, especially for Au<sup>+</sup>: 83 % and 60 % respectively, for the first two H<sub>2</sub> ligands intimately bonded to Au<sup>+</sup>, and 19 % and 67 % respectively, for the addition of the first two H<sub>2</sub> ligands to AuH<sup>+</sup>. Relativistic enhancements for the addition of a third H<sub>2</sub> ligand and beyond were found to be essentially negligible.</div></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"517 ","pages":"Article 117507"},"PeriodicalIF":1.7,"publicationDate":"2025-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144840827","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-01Epub Date: 2025-08-07DOI: 10.1016/j.ijms.2025.117495
Sukanya Jana , Santu Nath , Pintu Mandal , Nabanita Deb
This article reports the appearance of the octupole and hexadecapole components in the radial potential, which are otherwise absent in a linear quadrupole mass filter of symmetric round-rod configuration, if a small structural asymmetry is introduced in one electrode. Using the commercial ion simulation package SIMION, it is shown that the weightage of the octupole and hexadecapole potential increases with an increase in the asymmetry factor. A consistent correlation is observed between the octupole and dodecapole components, and between the hexadecapole and icosapole components with asymmetry added to different rod-to-field radius ratios. The transmission characteristics of the mass filter are studied for different asymmetry factors and rod-to-field radius ratios. The variation in the resolution parameter, as derived from the transmission contour, exhibits a strong correlation with the combined weightage of the multipole fields.
{"title":"Effect of rod asymmetry on field distortions and transmission characteristics in linear quadrupole mass filters","authors":"Sukanya Jana , Santu Nath , Pintu Mandal , Nabanita Deb","doi":"10.1016/j.ijms.2025.117495","DOIUrl":"10.1016/j.ijms.2025.117495","url":null,"abstract":"<div><div>This article reports the appearance of the octupole and hexadecapole components in the radial potential, which are otherwise absent in a linear quadrupole mass filter of symmetric round-rod configuration, if a small structural asymmetry is introduced in one electrode. Using the commercial ion simulation package SIMION, it is shown that the weightage of the octupole and hexadecapole potential increases with an increase in the asymmetry factor. A consistent correlation is observed between the octupole and dodecapole components, and between the hexadecapole and icosapole components with asymmetry added to different rod-to-field radius ratios. The transmission characteristics of the mass filter are studied for different asymmetry factors and rod-to-field radius ratios. The variation in the resolution parameter, as derived from the transmission contour, exhibits a strong correlation with the combined weightage of the multipole fields.</div></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"517 ","pages":"Article 117495"},"PeriodicalIF":1.7,"publicationDate":"2025-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144827876","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-01Epub Date: 2025-07-08DOI: 10.1016/j.ijms.2025.117493
Chenxin Ye , Xinyao Wang , Junliang Zhang , Boping Li , Jiancheng Yu
This study experimentally investigates the properties of low-pressure dielectric barrier discharge (DBD) plasma. A ring-ring DBD configuration was employed. Spectroscopic and electrical measurements were conducted at varying gas pressures to characterize the plasma properties. The results revealed that the luminous region of the plasma expands and exhibits maximum luminescence near 600 Pa, with a subsequent contraction and intensity diminution at lower pressures. Analysis of emission spectra identified nitrogen's second positive system (SPS) and first negative system (FNS) as the primary contributors. The highest density of excited molecule and excited ion are at 660 Pa and 100 Pa, respectively. Mass spectrometry measurements indicate that the excited state has the ability to undergo Penning ionization. This study provides the variation of excited molecules and ions with pressure in low-pressure dielectric barrier discharge, which can be used for the optimization of ionization source and the analysis of mass spectrometry data.
{"title":"Experimental studies on low-pressure air dielectric barrier discharge plasma for ionization source","authors":"Chenxin Ye , Xinyao Wang , Junliang Zhang , Boping Li , Jiancheng Yu","doi":"10.1016/j.ijms.2025.117493","DOIUrl":"10.1016/j.ijms.2025.117493","url":null,"abstract":"<div><div>This study experimentally investigates the properties of low-pressure dielectric barrier discharge (DBD) plasma. A ring-ring DBD configuration was employed. Spectroscopic and electrical measurements were conducted at varying gas pressures to characterize the plasma properties. The results revealed that the luminous region of the plasma expands and exhibits maximum luminescence near 600 Pa, with a subsequent contraction and intensity diminution at lower pressures. Analysis of emission spectra identified nitrogen's second positive system (SPS) and first negative system (FNS) as the primary contributors. The highest density of excited molecule <span><math><mrow><msub><mi>N</mi><mn>2</mn></msub><mrow><mo>(</mo><mrow><msup><mi>C</mi><mn>3</mn></msup><msub><mi>Π</mi><mi>u</mi></msub></mrow><mo>)</mo></mrow></mrow></math></span> and excited ion <span><math><mrow><msubsup><mi>N</mi><mn>2</mn><mo>+</mo></msubsup><mrow><mo>(</mo><mrow><msup><mi>B</mi><mn>2</mn></msup><msubsup><mi>Σ</mi><mi>u</mi><mo>+</mo></msubsup></mrow><mo>)</mo></mrow></mrow></math></span> are at 660 Pa and 100 Pa, respectively. Mass spectrometry measurements indicate that the excited state <span><math><mrow><msub><mi>N</mi><mn>2</mn></msub><mrow><mo>(</mo><mrow><msup><mi>C</mi><mn>3</mn></msup><msub><mi>Π</mi><mi>u</mi></msub></mrow><mo>)</mo></mrow></mrow></math></span> has the ability to undergo Penning ionization. This study provides the variation of excited molecules and ions with pressure in low-pressure dielectric barrier discharge, which can be used for the optimization of ionization source and the analysis of mass spectrometry data.</div></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"516 ","pages":"Article 117493"},"PeriodicalIF":1.6,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144611550","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-01Epub Date: 2025-06-28DOI: 10.1016/j.ijms.2025.117485
Binrui Xie , Yanbing Li , Nan Zhang , Chuangui Zhou , Jiexun Bu , Lun Wu , Jun Zhu , Wenzhuo Wang , Lei Liu , Ming Li
In this study, an innovative approach combining Machine Learning (ML) with Ensemble Empirical Mode Decomposition (EEMD) was proposed to predict lamotrigine concentrations in actual samples, improving detection performance in complex matrices. EEMD decomposed the mass spectrometry data to extract Intrinsic Mode Functions (IMFs), enabling separation of noise from key signal features. Ridge Regression (RR) addressed multicollinearity among high-dimensional IMF features and enhanced model generalization via L2 regularization. ML was further applied to optimize the key EEMD parameter (ensemble number K),thereby improving both decomposition quality and prediction accuracy. Experimental validation showed that the method achieved over 90 % prediction accuracy in three types of blind samples (PBS, rabbit blood, and human matrix), with improved Relative Standard Deviation (RSD). These results confirm the method’s precision and robustness in diverse biological matrices. Compared to traditional techniques, the proposed approach delivers marked improvements in both accuracy and stability, can supporting more reliable drug concentration monitoring for clinical applications.
{"title":"An adaptive EEMD-machine learning algorithm for multi-matrix drug concentration prediction using miniature mass spectrometry","authors":"Binrui Xie , Yanbing Li , Nan Zhang , Chuangui Zhou , Jiexun Bu , Lun Wu , Jun Zhu , Wenzhuo Wang , Lei Liu , Ming Li","doi":"10.1016/j.ijms.2025.117485","DOIUrl":"10.1016/j.ijms.2025.117485","url":null,"abstract":"<div><div>In this study, an innovative approach combining Machine Learning (ML) with Ensemble Empirical Mode Decomposition (EEMD) was proposed to predict lamotrigine concentrations in actual samples, improving detection performance in complex matrices. EEMD decomposed the mass spectrometry data to extract Intrinsic Mode Functions (IMFs), enabling separation of noise from key signal features. Ridge Regression (RR) addressed multicollinearity among high-dimensional IMF features and enhanced model generalization via L2 regularization. ML was further applied to optimize the key EEMD parameter (ensemble number K),thereby improving both decomposition quality and prediction accuracy. Experimental validation showed that the method achieved over 90 % prediction accuracy in three types of blind samples (PBS, rabbit blood, and human matrix), with improved Relative Standard Deviation (RSD). These results confirm the method’s precision and robustness in diverse biological matrices. Compared to traditional techniques, the proposed approach delivers marked improvements in both accuracy and stability, can supporting more reliable drug concentration monitoring for clinical applications.</div></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"516 ","pages":"Article 117485"},"PeriodicalIF":1.6,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144523240","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-01Epub Date: 2025-07-18DOI: 10.1016/j.ijms.2025.117494
L. Torrisi , A. Torrisi , M. Cutroneo
Graphene oxide (GO) foils were irradiated in high vacuum using an ns pulsed laser operating at 1064 nm and different fluences. Laser irradiation generates plasma and promotes the emission of carbon atoms and molecules, functional groups of oxygen, and absorbed gases, generating a surface GO reduction. The emitted particles have been monitored through a high-sensitivity mass quadrupole spectrometer operating between 1 amu and 300 amu.
The produced laser irradiation was investigated using low fluences, as well as the generated plasma.
The pristine and laser-irradiated GO were analyzed using different analysis techniques: Optical spectroscopy, time-of-flight measurements and mass spectrometry. The results obtained in previous experiments using other types of analyses were also cited.
Results demonstrated that under laser-irradiation graphene oxide loses different functional groups of oxygen becoming richer in sp2 hybridized carbon content, enhancing its carbon content, and becoming more electrically conductive.
{"title":"Mass spectrometry of laser reduced graphene oxide in vacuum","authors":"L. Torrisi , A. Torrisi , M. Cutroneo","doi":"10.1016/j.ijms.2025.117494","DOIUrl":"10.1016/j.ijms.2025.117494","url":null,"abstract":"<div><div>Graphene oxide (GO) foils were irradiated in high vacuum using an <em>ns</em> pulsed laser operating at 1064 nm and different fluences. Laser irradiation generates plasma and promotes the emission of carbon atoms and molecules, functional groups of oxygen, and absorbed gases, generating a surface GO reduction. The emitted particles have been monitored through a high-sensitivity mass quadrupole spectrometer operating between 1 amu and 300 amu.</div><div>The produced laser irradiation was investigated using low fluences, as well as the generated plasma.</div><div>The pristine and laser-irradiated GO were analyzed using different analysis techniques: Optical spectroscopy, time-of-flight measurements and mass spectrometry. The results obtained in previous experiments using other types of analyses were also cited.</div><div>Results demonstrated that under laser-irradiation graphene oxide loses different functional groups of oxygen becoming richer in sp<sup>2</sup> hybridized carbon content, enhancing its carbon content, and becoming more electrically conductive.</div></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"516 ","pages":"Article 117494"},"PeriodicalIF":1.6,"publicationDate":"2025-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144670271","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-01Epub Date: 2025-06-18DOI: 10.1016/j.ijms.2025.117484
Luke MacAleese , Xavier Dagany , Lény Garcia , Jérôme Lemoine , Philippe Dugourd , Marion Girod
An analytical method is demonstrated which allows to follow a data independent, all ion fragmentation (AIF) acquisition procedure, but to fall back on a standard and generic data-dependent acquisition (DDA) analysis procedure for the data treatment: searching databases with individual precursor ions and fragments lists. This method is implemented with photo-activation (LID) in the visible range which allows extreme specificity and sensitivity, and is demonstrated on Cysteine-containing tryptic peptides grafted with a chromophore. This proof of concept relies on the efficient implementation of LID directly in the C-trap of a ThermoScientific QExactive mass spectrometer during ion accumulation, before full MS detection. Laser irradiation turned alternatively ON and OFF after each full MS allows to build differential mass spectra in which non-dissociating ions are cancelled out while fragmenting precursors and fragments show up with opposite signs, which enables to build precursor/fragments lists for database search. Protein identification was demonstrated with remarkably low false discovery rates. Relative quantification was also demonstrated by integration of precursor and fragment ion elution peaks after differential analysis and limits of quantifications were demonstrated down to 11 ng of proteins injected. This mixed approach takes the best of both worlds – the deep proteome coverage of DIA, with the exhaustive fragmentation of all precursor ions, and the reliability and ease of use of classical DDA database search, relieving the need for the initial constitution of a spectral library.
{"title":"All-ions laser induced dissociation (AI-LID) in the C-trap of a Q Exactive: Data independent identification and quantification directly from ultra-high resolution differential mass spectra","authors":"Luke MacAleese , Xavier Dagany , Lény Garcia , Jérôme Lemoine , Philippe Dugourd , Marion Girod","doi":"10.1016/j.ijms.2025.117484","DOIUrl":"10.1016/j.ijms.2025.117484","url":null,"abstract":"<div><div>An analytical method is demonstrated which allows to follow a data independent, all ion fragmentation (AIF) acquisition procedure, but to fall back on a standard and generic data-dependent acquisition (DDA) analysis procedure for the data treatment: searching databases with individual precursor ions and fragments lists. This method is implemented with photo-activation (LID) in the visible range which allows extreme specificity and sensitivity, and is demonstrated on Cysteine-containing tryptic peptides grafted with a chromophore. This proof of concept relies on the efficient implementation of LID directly in the C-trap of a ThermoScientific QExactive mass spectrometer during ion accumulation, before full MS detection. Laser irradiation turned alternatively ON and OFF after each full MS allows to build differential mass spectra in which non-dissociating ions are cancelled out while fragmenting precursors and fragments show up with opposite signs, which enables to build precursor/fragments lists for database search. Protein identification was demonstrated with remarkably low false discovery rates. Relative quantification was also demonstrated by integration of precursor and fragment ion elution peaks after differential analysis and limits of quantifications were demonstrated down to 11 ng of proteins injected. This mixed approach takes the best of both worlds – the deep proteome coverage of DIA, with the exhaustive fragmentation of all precursor ions, and the reliability and ease of use of classical DDA database search, relieving the need for the initial constitution of a spectral library.</div></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"515 ","pages":"Article 117484"},"PeriodicalIF":1.6,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144335901","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-01Epub Date: 2025-05-31DOI: 10.1016/j.ijms.2025.117474
VarunK. Yadav , R.K. Bhatia , A. Singh , A.M. Kasbeker , M.M. Gulhane , E. Ravisankar , T.K. Saha
The present work deals with the design and development of an efficient cavity ion source (CIS). The design optimization of CIS was carried out on the basis of experimental studies using an indigenous quadrupole mass analyser (QMA). Subsequently, the optimally designed CIS was characterized for the quantitative and qualitative detection of various rare earth and actinide elements. Sensitivity measurement was carried out using total evaporation technique. Same set of studies were also conducted on a conventional thermal ion source (TIS) to compare the performance of the CIS with conventional TIS. The CIS showed an improvement in respective sensitivity by a factor of about 7 and 4 times for Uranium and Strontium as compared to conventional TIS. The improved sensitivity of CIS is attributed to the multiple interactions of the analyte species with the inner surface of the high temperature cavity tube thereby increasing its ionization probability.
{"title":"Development of a high efficiency cavity ion source and its characterization using a quadrupole mass analyser","authors":"VarunK. Yadav , R.K. Bhatia , A. Singh , A.M. Kasbeker , M.M. Gulhane , E. Ravisankar , T.K. Saha","doi":"10.1016/j.ijms.2025.117474","DOIUrl":"10.1016/j.ijms.2025.117474","url":null,"abstract":"<div><div>The present work deals with the design and development of an efficient cavity ion source (CIS). The design optimization of CIS was carried out on the basis of experimental studies using an indigenous quadrupole mass analyser (QMA). Subsequently, the optimally designed CIS was characterized for the quantitative and qualitative detection of various rare earth and actinide elements. Sensitivity measurement was carried out using total evaporation technique. Same set of studies were also conducted on a conventional thermal ion source (TIS) to compare the performance of the CIS with conventional TIS. The CIS showed an improvement in respective sensitivity by a factor of about 7 and 4 times for Uranium and Strontium as compared to conventional TIS. The improved sensitivity of CIS is attributed to the multiple interactions of the analyte species with the inner surface of the high temperature cavity tube thereby increasing its ionization probability.</div></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"515 ","pages":"Article 117474"},"PeriodicalIF":1.6,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144222801","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-01Epub Date: 2025-06-06DOI: 10.1016/j.ijms.2025.117473
Camille Guitteny , Simon Ollivier , Oznur Yeni , Mathis Ralaivao , Mathieu Fanuel , Joël Boustie , Isabelle Compagnon , Vincent Ferrières , Solenn Ferron , Hélène Rogniaux , David Ropartz , Laurent Legentil , Françoise Le Dévéhat
MALDI-TOF MS methods coupled with offline chromatographic data were used to compare the distribution of oligosaccharides generated from acidic or oxidative degradation (Fitdog) of high molecular weight polysaccharides (>10 kDa) obtained from two lichens Lasallia pustulata and Cetraria islandica. MALDI allowed to quickly compare the kinetics of degradation on both models (starting from non-purified polysaccharides) and to evaluate the dispersity of the resulting oligosaccharides. MALDI-MS confirmed on one hand that TFA hydrolysis gave neutral oligosaccharides easy to correlate with the chemical formula. On the other hand, more structural diversity was evidenced using the Fitdog protocol. Deep analysis of the MALDI data highlighted the formation of by-products corresponding to modified oligosaccharides (e.g., intracyclic cleavages).
{"title":"MALDI-TOF-MS unveils the distribution of oligosaccharides produced by hydrolysis of lichen polysaccharides through acidic and oxidative methods – a comparative study","authors":"Camille Guitteny , Simon Ollivier , Oznur Yeni , Mathis Ralaivao , Mathieu Fanuel , Joël Boustie , Isabelle Compagnon , Vincent Ferrières , Solenn Ferron , Hélène Rogniaux , David Ropartz , Laurent Legentil , Françoise Le Dévéhat","doi":"10.1016/j.ijms.2025.117473","DOIUrl":"10.1016/j.ijms.2025.117473","url":null,"abstract":"<div><div>MALDI-TOF MS methods coupled with offline chromatographic data were used to compare the distribution of oligosaccharides generated from acidic or oxidative degradation (Fitdog) of high molecular weight polysaccharides (>10 kDa) obtained from two lichens <em>Lasallia pustulata</em> and <em>Cetraria islandica</em>. MALDI allowed to quickly compare the kinetics of degradation on both models (starting from non-purified polysaccharides) and to evaluate the dispersity of the resulting oligosaccharides. MALDI-MS confirmed on one hand that TFA hydrolysis gave neutral oligosaccharides easy to correlate with the chemical formula. On the other hand, more structural diversity was evidenced using the Fitdog protocol. Deep analysis of the MALDI data highlighted the formation of by-products corresponding to modified oligosaccharides (e.g., intracyclic cleavages).</div></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"515 ","pages":"Article 117473"},"PeriodicalIF":1.6,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144280201","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-01Epub Date: 2025-06-04DOI: 10.1016/j.ijms.2025.117482
Thanh D. Do
Advancing our understanding of biomolecular systems requires technologies that can unravel their intricate dynamics and structures. Mass spectrometry (MS) has emerged as a versatile technique for characterizing complex systems, yet its findings are most impactful when paired with structural methods such as NMR, X-ray crystallography, and microscopy. This Perspective examines how ion mobility-mass spectrometry (IM-MS) serves as a key connector between dynamic molecular behavior and high-resolution structural insights. Examples from recent research in our laboratory illustrate how IM-MS enhances the study of flexible peptides, transient protein assemblies, and metabolite aggregation. These studies highlight the method's ability to reveal properties inaccessible to single techniques. By integrating multiple approaches, researchers gain a more comprehensive view of biomolecular complexity, demonstrating the power of combining analytical methods to tackle open questions in structural biology. This approach reflects the collaborative and iterative nature of science, where diverse perspectives converge to deepen our understanding of the molecular world.
{"title":"Structural ion mobility spectrometry: What can we really measure?","authors":"Thanh D. Do","doi":"10.1016/j.ijms.2025.117482","DOIUrl":"10.1016/j.ijms.2025.117482","url":null,"abstract":"<div><div>Advancing our understanding of biomolecular systems requires technologies that can unravel their intricate dynamics and structures. Mass spectrometry (MS) has emerged as a versatile technique for characterizing complex systems, yet its findings are most impactful when paired with structural methods such as NMR, X-ray crystallography, and microscopy. This Perspective examines how ion mobility-mass spectrometry (IM-MS) serves as a key connector between dynamic molecular behavior and high-resolution structural insights. Examples from recent research in our laboratory illustrate how IM-MS enhances the study of flexible peptides, transient protein assemblies, and metabolite aggregation. These studies highlight the method's ability to reveal properties inaccessible to single techniques. By integrating multiple approaches, researchers gain a more comprehensive view of biomolecular complexity, demonstrating the power of combining analytical methods to tackle open questions in structural biology. This approach reflects the collaborative and iterative nature of science, where diverse perspectives converge to deepen our understanding of the molecular world.</div></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"515 ","pages":"Article 117482"},"PeriodicalIF":1.6,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144222800","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-01Epub Date: 2025-06-16DOI: 10.1016/j.ijms.2025.117483
Jing Yu , Sven Heiles
Sphingolipids are essential building blocks of most organisms. The structure of sphingolipids is tightly regulated and dysregulation during diseases can result in altered sphingolipid structures. In this manuscript, we explore the potential of sphingolipid epoxidation for the assignment and discrimination of sphingolipid structures. Employing shotgun tandem mass spectrometry, liquid chromatography tandem mass spectrometry, authentic sphingolipid standards, and density function theory, we demonstrate that epoxidation of shingoid bases (SPBs), ceramides, and sphingomyelins facilitates C=C bond (DB) position assignment. This includes DBs in the N-linked fatty acyl moiety and the sphingoid base. For SPBs with DBs at position 4, a major component for almost all sphingolipids, we furthermore demonstrate that the fragmentation pathway differs for this DB position compared to other DB-diagnostic fragment ions. We show that epoxidation of this DB position facilities intramolecular rearrangement and formation of distinct diagnostic fragment ions. To demonstrate the analytical capabilities and show that the 4 SPB DBs enable confident differentiation of ceramides and dihydroceramides, results for brain ceramide extract are presented. The identified fragmentation pathway for 4 SPB DB ions in combination with N-acyl assignment and DB position assignment allows to annotate 25 ceramide/dihydroceramide compounds in the brain ceramide extract out of which 23 are DB position isomers.
{"title":"Structure selective fragment ions of epoxidized sphingolipids","authors":"Jing Yu , Sven Heiles","doi":"10.1016/j.ijms.2025.117483","DOIUrl":"10.1016/j.ijms.2025.117483","url":null,"abstract":"<div><div>Sphingolipids are essential building blocks of most organisms. The structure of sphingolipids is tightly regulated and dysregulation during diseases can result in altered sphingolipid structures. In this manuscript, we explore the potential of sphingolipid epoxidation for the assignment and discrimination of sphingolipid structures. Employing shotgun tandem mass spectrometry, liquid chromatography tandem mass spectrometry, authentic sphingolipid standards, and density function theory, we demonstrate that epoxidation of shingoid bases (SPBs), ceramides, and sphingomyelins facilitates C=C bond (DB) position assignment. This includes DBs in the N-linked fatty acyl moiety and the sphingoid base. For SPBs with DBs at position 4, a major component for almost all sphingolipids, we furthermore demonstrate that the fragmentation pathway differs for this DB position compared to other DB-diagnostic fragment ions. We show that epoxidation of this DB position facilities intramolecular rearrangement and formation of distinct diagnostic fragment ions. To demonstrate the analytical capabilities and show that the 4 SPB DBs enable confident differentiation of ceramides and dihydroceramides, results for brain ceramide extract are presented. The identified fragmentation pathway for 4 SPB DB ions in combination with N-acyl assignment and DB position assignment allows to annotate 25 ceramide/dihydroceramide compounds in the brain ceramide extract out of which 23 are DB position isomers.</div></div>","PeriodicalId":338,"journal":{"name":"International Journal of Mass Spectrometry","volume":"515 ","pages":"Article 117483"},"PeriodicalIF":1.6,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144330782","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}