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Comparative evaluation of protein digestion and solid-phase extraction strategies for oligonucleotide quantification in plasma using LC-MS/MS LC-MS/MS法测定血浆中寡核苷酸的蛋白质消化和固相萃取方法的比较评价。
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-14 DOI: 10.1016/j.chroma.2026.466707
Vidya Annavarapu, Michael G. Bartlett
Oligonucleotide therapeutics are an emerging class of drugs, but their development is challenged by difficulties in efficient extraction and quantification, primarily due to their polarity and susceptibility to degradation by nucleases. Solid phase extraction (SPE) is one of the methods used for oligonucleotide extraction, offering sensitivity along with selectivity. Surfactant-based buffer has traditionally been used in SPE extraction of oligonucleotides, but there is now a growing focus on exploring alternatives to this method. In this study, we investigated the use of a non-surfactant buffer pretreatment module for SPE extraction of oligonucleotides using both WAX-based and mixed-mode microplates. The methods for both mixed-mode and WAX-based SPE microplates were validated and applied in an in-vitro stability study. Our study showed good recovery and easy sample preparation when using the non-surfactant buffer pretreatment module, across both microplate types. The surfactant-based buffer (SB) used with proteinase K also gave a better recovery when applied to the WAX-based SPE microplate.
寡核苷酸治疗药物是一类新兴的药物,但其发展受到有效提取和定量困难的挑战,主要是由于它们的极性和易被核酸酶降解。固相萃取(SPE)是用于提取寡核苷酸的方法之一,具有灵敏度高、选择性好等优点。基于表面活性剂的缓冲液传统上用于SPE提取寡核苷酸,但现在越来越多的人关注于探索该方法的替代方法。在这项研究中,我们研究了在蜡基和混合模式微孔板上使用非表面活性剂缓冲预处理模块来SPE提取寡核苷酸。验证了混合模式和蜡基固相萃取微孔板的方法,并将其应用于体外稳定性研究。我们的研究表明,在两种微孔板类型中,使用非表面活性剂缓冲预处理模块时,回收率高,样品制备容易。与蛋白酶K配合使用的表面活性剂缓冲液(SB)在蜡基固相萃取微孔板上也有较好的回收率。
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引用次数: 0
Multi-attribute methods in antibody-drug conjugate characterization and quality control: Opportunities, challenges, and regulatory outlook 抗体-药物偶联物表征和质量控制中的多属性方法:机遇、挑战和监管前景。
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-14 DOI: 10.1016/j.chroma.2026.466711
Devendra Kumar , Neerja Trivedi
Antibody-drug conjugates (ADCs) are complex biotherapeutics that combine the selectivity of monoclonal antibodies with the potency of cytotoxic payloads. Their structural heterogeneity, arising from variable conjugation sites, drug-to-antibody ratios (DAR), linker stability, and post-translational modifications, presents significant challenges for characterization and quality control. Multi-Attribute Methods (MAM), based on high-resolution mass spectrometry, have emerged as powerful tools to simultaneously identify and quantify critical quality attributes at multiple levels of analysis, including intact protein, subunits, and peptides. Compared with traditional assays such as capillary electrophoresis-sodium dodecyl sulfate, hydrophobic interaction chromatography, and Ion exchange chromatography, MAM offers higher specificity, sensitivity, and the ability to detect unexpected modifications in a single workflow. This review summarizes recent advances in the application of MAM to ADC development, highlighting strategies for monitoring DAR distribution, conjugation site occupancy, and stability of linkers and payloads. We also discuss challenges in method qualification, data handling, and regulatory acceptance, along with the potential of automation and machine learning to support large-scale implementation. Finally, we explore the future outlook of MAM as an integrated platform method for ADCs characterization and quality control, with emphasis on its role in regulatory submissions and quality control release testing.
抗体-药物偶联物(adc)是一种复杂的生物治疗药物,它结合了单克隆抗体的选择性和细胞毒性有效载荷的效力。由于偶联位点、药抗比(DAR)、连接体稳定性和翻译后修饰的变化,它们的结构异质性对表征和质量控制提出了重大挑战。基于高分辨率质谱法的多属性方法(MAM)已经成为在多个分析层面同时识别和量化关键质量属性的强大工具,包括完整的蛋白质、亚基和肽。与传统的毛细管电泳-十二烷基硫酸钠、疏水相互作用色谱和离子交换色谱等分析方法相比,MAM具有更高的特异性、灵敏度和在单个工作流程中检测意外变化的能力。本文综述了MAM在ADC开发中应用的最新进展,重点介绍了监测DAR分布、共轭位点占用以及连接物和有效载荷稳定性的策略。我们还讨论了方法鉴定、数据处理和监管接受方面的挑战,以及自动化和机器学习支持大规模实施的潜力。最后,我们探讨了MAM作为adc表征和质量控制的集成平台方法的未来前景,重点是其在监管提交和质量控制释放测试中的作用。
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引用次数: 0
Groundwater-adapted FMOC-LC-MS/MS for glyphosate, glufosinate and AMPA: EDTA-assisted preconditioning and application in Buenos Aires wells 地下水适用FMOC-LC-MS/MS测定草甘膦、草铵膦和AMPA: edta辅助预处理及其在布宜诺斯艾利斯井中的应用
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-14 DOI: 10.1016/j.chroma.2026.466708
Tomás M. Mac Loughlin , Marcos Navarro , Marianela Ramos , Daiana D. Dell' Arciprete , C. Felipe Herrera Niño , F. Manuel Flores , Ma. Leticia Peluso
Glyphosate (GLY) and its main degradation product aminomethylphosphonic acid (AMPA), together with the chemically related phosphinic acid herbicide glufosinate (GLU), are widely used agrochemicals. Their reliable quantification in groundwater remains analytically challenging due to complexation with divalent cations and matrix-dependent ionization. This work developed and validated a groundwater-adapted LC-MS/MS method using FMOC derivatization and isotopically labeled glyphosate (GLY*) as internal standard. The new protocol (SUBTE, from SUBTERRANEAN) introduces an acidification in the presence of excess EDTA to disrupt metal complexes prior to derivatization and was benchmarked against a conventional borate-buffer workflow (BORAX). Normalized calibration (analyte/GLY*) was linear from 0.5 to 20 µg·L−1 (R2 ≥ 0.99) and origin-compatible. Operational LOD/LOQ in matrix were 0.003/0.01 µg·L−1 for GLY, 0.01/0.04 for GLU, and 0.02/0.06 for AMPA, meeting precision criteria (≤20 % RSD at the lowest level). Across real groundwater samples spanning wide conductivity and Ca+2 + Mg+2 ranges (n = 50), SUBTE achieved mean recoveries of ∼96 % compared with ∼70 % for BORAX, demonstrating effective mitigation of divalent-cation artefacts and enhanced robustness in hard waters. No analyte exceeded the detection limit in any well at the time of sampling, consistent with the low-mobility, Ca-rich geo-pedologic setting of the Pampean plain. The SUBTE workflow thus provides a validated, matrix-resilient approach for routine monitoring of GLY, AMPA, and GLU in groundwater, ensuring reliable quantification under variable hydrogeochemical conditions.
草甘膦(glly)及其主要降解产物氨甲基膦酸(AMPA)以及与膦酸相关的化学除草剂草铵膦(GLU)是广泛使用的农用化学品。由于与二价阳离子和基质依赖电离的络合作用,地下水中它们的可靠定量分析仍然具有挑战性。本工作开发并验证了一种适用于地下水的LC-MS/MS方法,使用FMOC衍生化和同位素标记草甘膦(GLY*)作为内标。新方案(SUBTE,来自SUBTERRANEAN)引入了在过量EDTA存在下的酸化,以在衍生化之前破坏金属配合物,并与传统的硼酸缓冲液工作流程(BORAX)进行了基准测试。归一化校准(分析物/GLY*)在0.5 ~ 20µg·L-1范围内呈线性(R2≥0.99),且与原产地兼容。GLY、GLU、AMPA的LOD/LOQ分别为0.003/0.01µg·L-1、0.01/0.04、0.02/0.06,符合精密度标准(最低RSD≤20%)。在广泛电导率和Ca+2 + Mg+2范围(n = 50)的实际地下水样品中,SUBTE的平均回收率为~ 96%,而硼砂的平均回收率为~ 70%,这表明SUBTE有效地缓解了二价阳离子伪影,并增强了硬水中的稳稳性。采样时,没有任何一口井的分析物超过检出限,这与潘潘平原低流动性、富钙的地质环境相一致。因此,SUBTE工作流程为地下水中GLY、AMPA和GLU的常规监测提供了一种有效的、矩阵弹性的方法,确保了在可变水文地球化学条件下的可靠量化。
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引用次数: 0
Molecular dynamics simulations elucidate the structural determinants of size-exclusion chromatography behavior in dimeric G-quadruplex-RHAU 分子动力学模拟阐明了二聚体g -四聚体- rhau中尺寸排除色谱行为的结构决定因素
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-12 DOI: 10.1016/j.chroma.2026.466706
Min Zhu , Long-yu Zhu , Lu-yan An , Ju Wang , Jun-qin Qiao , Han-yue Yang , Wei-juan Zheng , Hong-zhen Lian
Research on G-quadruplexes (G4s)-RNA helicase associated with AU-rich element (RHAU) interaction has facilitated G4s-targeted therapeutic development. Despite this progress, the interaction between dimeric G-quadruplexes (d-G4s) and RHAU remain less explored compared to monomeric structures. Developing convenient and visual methods to elucidate the interaction mechanisms between different d-G4s structures and RHAU can provide new insights into binding modes, thus aiding in the design of molecular tools targeting d-G4s. In this study, we combined molecular dynamics (MD) simulations with size-exclusion chromatography (SEC) and isothermal titration calorimetry (ITC) to investigate structural dependencies in d-G4s-RHAU interactions for the first time. Diverse d-G4s included hybrid non-parallel (d-24TTG), intramolecular tandem parallel (dAGRO100, GGA8), interlocking parallel (93del), and intermolecular stacked parallel (T30695, T30177) structures were analyzed. MD simulations revealed that the distinct SEC retention behaviors in d-G4s-RHAU interactions were mainly governed by binding site accessibility, inter-site steric hindrance, and binding free energy gradients, trends supported by ITC measured affinities. Furthermore, energy decomposition analysis identified Glu26 in RHAU as a critical residue contributing to electrostatic interactions. Mutating to Arg26 substantially decreased the binding free energy (-94.05 ± 0.41 kJ/mol), emphasizing its functional importance. Thus, this work demonstrates that MD simulations are indispensable for revealing the causes of experimental phenomena and understanding the mechanisms underlying chromatographic behavior. This combined strategy not only discerns interaction patterns stemming from structural diversity but facilitates the rapid screening of G4s-targeting molecules.
g -四重复合物(G4s)-RNA解旋酶与富au元素(RHAU)相互作用的研究促进了G4s靶向治疗的开发。尽管取得了这些进展,但与单体结构相比,二聚体g -四聚物(d-G4s)和RHAU之间的相互作用仍然较少被探索。开发方便直观的方法来阐明不同d-G4s结构与RHAU之间的相互作用机制,可以为研究结合模式提供新的见解,从而有助于设计针对d-G4s的分子工具。在这项研究中,我们首次将分子动力学(MD)模拟与尺寸排除色谱(SEC)和等温滴定量热法(ITC)相结合,研究了d-G4s-RHAU相互作用的结构依赖性。分析了不同结构的d-G4s,包括杂化非平行(d-24TTG)、分子内串联平行(dAGRO100、GGA8)、互锁平行(93del)和分子间堆叠平行(T30695、T30177)。MD模拟表明,d-G4s-RHAU相互作用中不同的SEC保留行为主要受结合位点可达性、位点间空间位阻和结合自由能梯度的控制,这一趋势得到了ITC测量亲和性的支持。此外,能量分解分析确定了RHAU中的Glu26是参与静电相互作用的关键残基。突变Arg26显著降低了结合自由能(-94.05±0.41 kJ/mol),强调了其功能的重要性。因此,这项工作证明了MD模拟对于揭示实验现象的原因和理解色谱行为的机制是必不可少的。这种组合策略不仅可以识别源于结构多样性的相互作用模式,还可以促进g4s靶向分子的快速筛选。
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引用次数: 0
Critical parameters for achieving high efficiency and reproducible double-chained cationic surfactant coatings for protein separation by capillary electrophoresis 毛细管电泳分离蛋白质用高效、可重复的双链阳离子表面活性剂涂层的关键参数
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-11 DOI: 10.1016/j.chroma.2026.466705
Chirapha Prakobdi , Laurent Leclercq , Phoonthawee Saetear , Hervé Cottet
Analyzing intact proteins by capillary electrophoresis (CE) is challenging but highly valuable, as it holds potential for future clinical applications via the separation and quantification of protein biomarkers. To achieve this, the development of CE methods requires improvements in separation efficiency, reproducibility, and reduction of sample adsorption on the capillary wall. Double-chained surfactant coatings were described as potential candidate leading to high separation efficiency. In this work, a capillary coating based on dioctadecyldimethylammonium bromide (DODAB), a double-chained cationic surfactant, was investigated by assessing the critical parameters affecting DODAB-vesicle preparation and coating performances. These parameters include temperature & sonication of the coating solution, nature of the coating buffer, and capillary inner diameter. The plate height (H) of proteins as a function of their linear migration velocity (u) was systematically plotted to evaluate the separation performances under different kinetic conditions by applying different separation voltages. DODAB coating showed high surface homogeneity leading to low slope (p) of the H vs u curve (2.23 ± 0.99 ms in average on 3 different capillaries) on 5 model basic proteins (lysozyme, carbonic anhydrase, ribonuclease A, β-lactoglobulin A and myoglobin) using 2 M acetic acid, pH 2.2, as background electrolyte in a 40 cm total length and 25 μm inner diameter capillary. Excellent separation performances were achieved reaching up to 606,000 ± 27,000 plates/m at −12 kV for lysozyme, with excellent repeatability (RSD on migration times = 0.21 %).
通过毛细管电泳(CE)分析完整蛋白质具有挑战性,但具有很高的价值,因为它通过分离和定量蛋白质生物标志物在未来的临床应用中具有潜力。为了实现这一目标,CE方法的发展需要提高分离效率、重现性和减少样品在毛细管壁上的吸附。双链表面活性剂涂层具有较高的分离效率。本文研究了基于双链阳离子表面活性剂二十二烷基二甲基溴化铵(DODAB)的毛细管涂层,并对影响DODAB囊泡制备和涂层性能的关键参数进行了研究。这些参数包括涂层溶液的温度和超声,涂层缓冲液的性质和毛细管内径。系统地绘制了蛋白质的板高(H)随其线性迁移速度(u)的函数图,通过施加不同的分离电压来评价不同动力学条件下蛋白质的分离性能。在总长度为40 cm,内径为25 μm的毛细管中,以pH为2.2的2 M乙酸为背景电解质,在溶菌酶、碳酸酐酶、核糖核酸酶A、β-乳球蛋白A和肌红蛋白等5种模型碱性蛋白上,DODAB涂层具有较高的表面均匀性,H / u曲线斜率(p)较低(平均为2.23±0.99 ms)。在−12 kV下,溶菌酶的分离效率高达606,000±27,000 plates/m,具有良好的重复性(迁移次数的RSD = 0.21%)。
{"title":"Critical parameters for achieving high efficiency and reproducible double-chained cationic surfactant coatings for protein separation by capillary electrophoresis","authors":"Chirapha Prakobdi ,&nbsp;Laurent Leclercq ,&nbsp;Phoonthawee Saetear ,&nbsp;Hervé Cottet","doi":"10.1016/j.chroma.2026.466705","DOIUrl":"10.1016/j.chroma.2026.466705","url":null,"abstract":"<div><div>Analyzing intact proteins by capillary electrophoresis (CE) is challenging but highly valuable, as it holds potential for future clinical applications via the separation and quantification of protein biomarkers. To achieve this, the development of CE methods requires improvements in separation efficiency, reproducibility, and reduction of sample adsorption on the capillary wall. Double-chained surfactant coatings were described as potential candidate leading to high separation efficiency. In this work, a capillary coating based on dioctadecyldimethylammonium bromide (DODAB), a double-chained cationic surfactant, was investigated by assessing the critical parameters affecting DODAB-vesicle preparation and coating performances. These parameters include temperature &amp; sonication of the coating solution, nature of the coating buffer, and capillary inner diameter. The plate height (<em>H</em>) of proteins as a function of their linear migration velocity (<em>u</em>) was systematically plotted to evaluate the separation performances under different kinetic conditions by applying different separation voltages. DODAB coating showed high surface homogeneity leading to low slope (<em>p</em>) of the <em>H</em> vs <em>u</em> curve (2.23 ± 0.99 ms in average on 3 different capillaries) on 5 model basic proteins (lysozyme, carbonic anhydrase, ribonuclease A, β-lactoglobulin A and myoglobin) using 2 M acetic acid, pH 2.2, as background electrolyte in a 40 cm total length and 25 μm inner diameter capillary. Excellent separation performances were achieved reaching up to 606,000 ± 27,000 plates/m at −12 kV for lysozyme, with excellent repeatability (RSD on migration times = 0.21 %).</div></div>","PeriodicalId":347,"journal":{"name":"Journal of Chromatography A","volume":"1768 ","pages":"Article 466705"},"PeriodicalIF":4.0,"publicationDate":"2026-01-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146034307","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development of an arrow solid-phase microextraction GC–MS/MS method for the determination of 69 odorants in water 箭型固相微萃取-气相色谱-质谱联用/质谱联用方法测定水中69种气味剂。
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-10 DOI: 10.1016/j.chroma.2026.466703
FeiFei Dai , Ruoyu Zhang , Dandan Nie , Shuqing Ma , Yurong Qin
A quantitative method for determining 69 odorants in water was developed using arrow-type headspace solid-phase microextraction (SPME) coupled with gas chromatography-tandem mass spectrometry (GC–MS/MS). Key extraction parameters, including extraction and desorption temperatures and times, NaCl addition, fiber type, and rotation speed, were systematically optimized. Under the optimized conditions, target compounds were efficiently enriched, separated on a polar chromatographic column, detected in selected reaction monitoring (SRM) mode, and quantified using external calibration. The method demonstrated high sensitivity, with limits of detection (LODs) ranging from 0.015 to 75 ng/L, and 55 compounds exhibiting LODs below 10 ng/L. All analytes showed excellent linearity (R2 > 0.995) within their respective ranges. Precision was satisfactory, with relative standard deviations (RSDs) between 1.10 % and 17.85 %, including 59 compounds with RSDs <10 %. Average recoveries at three spiking levels ranged from 80 % to 120 %. This automated and environmentally friendly method offers high sensitivity and accuracy, meeting the analytical requirements for complex odorants in water.
建立了箭型顶空固相微萃取(SPME) -气相色谱-串联质谱(GC-MS/MS)联合测定水中69种气味剂的方法。对提取和解吸温度、次数、NaCl加入量、纤维类型、转速等关键提取参数进行了系统优化。在优化的条件下,目标化合物被高效富集,在极性色谱柱上分离,在选择的反应监测(SRM)模式下检测,并通过外部定标进行定量。该方法具有较高的灵敏度,检出限(lod)范围为0.015 ~ 75 ng/L, 55个化合物的lod低于10 ng/L。所有分析物在各自的范围内均具有良好的线性(R2 > 0.995)。精密度满意,相对标准偏差(rsd)在1.10% ~ 17.85%之间,有rsd的化合物59个
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引用次数: 0
Eco-friendly sugarcane bagasse-based biochar alginate beads as green sorbents for rapid and highly efficient benzoylurea insecticides extraction in tea samples 以甘蔗渣为基础的生物炭藻酸酯微球作为绿色吸附剂,快速高效地提取茶叶样品中的苯甲脲类杀虫剂。
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-10 DOI: 10.1016/j.chroma.2026.466701
Kittiya Sakhaem , Sujittra Aintharaprasert , Dararat Saenkam , Phatchara Rattanaphonsaen , Wannipha Khiaophong , Yanawath Santaladchaiyakit , Jitlada Vichapong
In this work, an environmentally method was proposed for the trace determination of benzoylureas by high performance liquid chromatography system after micro-solid phase extraction method. Sugarcane bagasse-based biochar alginate beads as were employed as sorbent material. The synthesized material was characterized. The univariate optimization approach was performed to determine optimum conditions for both preparation of sugarcane bead adsorbents and micro-solid phase extraction procedure. Under optimal conditions, the limit of detection was found to be in the range of 1.0 – 2.0 μg L–1 and the linearity was obtained between 3.0 and 400 μg L–1 with coefficient of determination greater than 0.99. The applicability of the investigated method was evaluated with recovery studies by spiking experiments in tea samples. The acceptable recovery results between 72.1 and 121.1 % by applying matrix matching calibration showed that the proposed analytical approach is feasible for the determination of benzoylurea insecticides in tea matrices.
本文建立了微固相萃取法后高效液相色谱法测定苯甲酰脲的环境分析方法。采用甘蔗渣基生物炭海藻酸盐微球作为吸附材料。对合成材料进行了表征。采用单因素优化方法确定甘蔗头吸附剂的制备工艺和微固相萃取工艺的最佳条件。在最佳条件下,该方法的检出限在1.0 ~ 2.0 μ L-1范围内,线性关系在3.0 ~ 400 μ L-1之间,测定系数大于0.99。通过在茶叶样品中进行加穗试验,对方法的适用性进行了评价。采用基质匹配校准,回收率在72.1 ~ 121.1%之间,表明该分析方法对茶基质中苯甲脲类杀虫剂的测定是可行的。
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引用次数: 0
Exploring adsorption–desorption kinetics and eddy dispersion in enantioselective hydrophilic interaction chromatography using teicoplanin-based chiral stationary phase 利用基于teicoplanin的手性固定相探索对映选择性亲水性相互作用色谱的吸附-解吸动力学和涡流分散
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-10 DOI: 10.1016/j.chroma.2026.466702
Chiara De Luca , Chiara Nosengo , Amirmohammad Faraji Shovey , Antonio Ricci , Martina Catani , Alberto Cavazzini , Fabrice Gritti , Simona Felletti
This research examined the kinetic behavior of two chiral probes (FMOC-Alanine and Haloxyfop) using a zwitterionic teicoplanin-based column and an aqueous-methanol mobile phase. More specifically, experimental results, supported by literature data measured using the same elution mode, indicate that the presence of a water layer adsorbed on the particle surface hinders analyte surface diffusion leading to localized adsorption. This shows cascading effects on longitudinal diffusion, solid–liquid mass transfer resistance and eddy dispersion, which become analyte-independent. The only difference in the measured plate heights is therefore given only by slow adsorption–desorption kinetics, confirming an important correlation between analyte structure and the extent of band broadening in chiral chromatography.
The findings reported in this study can be expanded to other molecules, suggesting that similar kinetic behavior could be expected if the same experimental conditions are maintained (e.g., same column manufacturer, silica particles, and elution mode). This would help accelerating the method development and the understanding of both the chiral recognition mechanism and the sources of band broadening occurring in chiral chromatography.
本研究使用两性离子teicoplanin基柱和水-甲醇流动相考察了两种手性探针(fmoc -丙氨酸和Haloxyfop)的动力学行为。更具体地说,使用相同洗脱模式测量的文献数据支持的实验结果表明,颗粒表面吸附的水层的存在阻碍了分析物表面的扩散,导致局部吸附。这显示了纵向扩散、固液传质阻力和涡流色散的级联效应,它们与分析物无关。因此,测量板高度的唯一差异仅由缓慢的吸附-解吸动力学给出,证实了手性色谱中分析物结构与波段拓宽程度之间的重要相关性。本研究报告的发现可以扩展到其他分子,表明如果保持相同的实验条件(例如,相同的色谱柱制造商,二氧化硅颗粒和洗脱模式),可以预期类似的动力学行为。这将有助于加快方法的发展和对手性识别机制和手性色谱中发生的带拓宽来源的理解。
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引用次数: 0
Reversed-phase chromatography of peptides carrying non-canonical proline analogues, with special focus on 4R/4S-fluoroproline 携带非典型脯氨酸类似物的肽的反相色谱法,特别关注4R/ 4s -氟脯氨酸
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-10 DOI: 10.1016/j.chroma.2026.466704
Alexandre Prefontaine , Justin Liba , Vic Spicer , Suvrat Chowdhary , Christin Treiber-Kleinke , Vladimir Kubyshkin , Beate Koksch , Ned Budisa , Oleg V. Krokhin
We investigated the reversed-phase chromatographic behaviour of peptides carrying nine non-canonical proline analogues using LC-MS/MS bottom-up proteomics analysis of Escherichia coli (E.coli) following co-translational incorporation. Of particular interest were the epimers 4R- and 4S-fluoroproline. On average, peptide interactions with the hydrophobic C18 phase increased in the order: 4R-Flp < Pro < 4S-Flp. The mean retention shifts were found to be -0.11 and +0.06% acetonitrile for 4R- and 4S-Flp, respectively (0.1% formic acid eluent additive). This diminutive average difference in hydrophobic properties belies the unpredictable chromatographic behaviour of modified peptides. The incorporation of either fluorinated epimer, each relatively amphipathic, can make certain peptides more hydrophobic, while for others, the peptide becomes more hydrophilic. Incorporation of a single 4R-fluoroproline produces a shift ranging from (2.18 to +2.55) %ACN, while 4S-fluoroproline produces shifts ranging from (-4.82 to +4.67) %ACN on the RP HPLC elution scale. In addition to common composition-dependent factors affecting peptide retention, such as peptide length, we identified several sequence-specific features that explain deviations from the average retention characteristics. These include nearest neighbour effects and amphipathic helicity. Other analogues investigated encompassed diverse chemical features, including hydroxylation (4R-hydroxyproline), dehydrogenation (3,4-dehydroproline), ring expansion (pipercolic acid), heteroatom inclusion (3-thia-proline & 4-thia-proline) and bridge ring structures (4,5-trans-methanoproline & 4,5-cis-methanoproline).
我们利用LC-MS/MS自下而上的大肠杆菌蛋白质组学分析,研究了携带9种非典型脯氨酸类似物的肽在共翻译合并后的反相色谱行为。特别令人感兴趣的是外显体4R-和4s -氟脯氨酸。平均而言,肽与疏水性C18相的相互作用顺序为:4R-Flp <; Pro < 4S-Flp。4R-和4S-Flp(0.1%甲酸洗脱剂)的平均保留位移分别为-0.11和+0.06%。这种微小的疏水性质的平均差异掩盖了修饰肽不可预测的色谱行为。两种相对两亲性的氟化表聚体的掺入可以使某些肽更疏水,而对其他肽则变得更亲水。在RP - HPLC洗脱标度上,单个4r -氟脯氨酸产生的ACN变化范围为(2.18 ~ +2.55)%,而4s -氟脯氨酸产生的ACN变化范围为(-4.82 ~ +4.67)%。除了影响肽保留的常见成分依赖因素(如肽长度)外,我们还确定了几个序列特异性特征,这些特征解释了与平均保留特征的偏差。这些包括最近邻效应和两相螺旋。其他被研究的类似物具有不同的化学特征,包括羟基化(4r -羟基脯氨酸)、脱氢(3,4-脱氢脯氨酸)、环扩张(胡椒酸)、杂原子包合(3-巯基脯氨酸和4-巯基脯氨酸)和桥环结构(4,5-反式甲烷脯氨酸和4,5-顺式甲烷脯氨酸)。
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引用次数: 0
Preparation of a novel C18-sulfobetaine stationary phase based on silica monolith particles for multimodal high performance liquid chromatography 多模态高效液相色谱c18 -磺基甜菜碱固定相的制备
IF 4 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2026-01-08 DOI: 10.1016/j.chroma.2026.466683
Ashraf Ali , Ya Song , Yongxing Hu , Sarah Alharthi , Eman Y. Santali , Wenjie Zhao
Mixed-mode stationary phases enhance separation flexibility for complex samples by integrating multiple retention mechanisms in high performance liquid chromatography (HPLC). In this study, a novel mixed-mode stationary phase was prepared by functionalizing sub-1 µm porous silica monolith particles (pore size ∼ 35 nm) with 4-vinyl-1,3-sulfopropyl pyridinium betaine (VSPB) and octadecyl silane (C18). The stationary phase (SMP-C18-SB) was characterized by X-ray photoelectron spectroscopy (XPS), scanning electron microscopy, transmission electron microscopy, solid-state 13C NMR spectroscopy, Brunauer-Emmett-Teller (BET) and Barrett-Joyner-Halenda (BJH) analysis. The resultant stationary phase was packed into stainless-steel column (150×4.6 mm) by slurry packing method with sequential pressure of 80-100 MPA. The SMP-C18-SB column demonstrated excellent separation performance for alkylbenzenes, nucleosides, zwitterionic compounds, peptides, and proteins, facilitated by hydrophobic, hydrogen bonding, and hydrophilic interactions from C18 and SB groups. SMP-C18-SB column exhibited superior separation performance in both reversed-phase and hydrophilic interaction modes. Moreover, the column back pressure was quite low owing to the irregular shape of SMPs. The SMP-C18-SB column also exhibited excellent repeatability, with intra-day relative standard deviations (RSDs) of <0.11% for retention time and <1.02% for peak area (n = 10 each) after nearly 1000 consecutive injection. Owing to its versatile mixed-mode capability, the SMP-C18-SB column could be used for the separation of complex mixtures containing polar, non-polar and zwitteionic compounds.
混合模式固定相在高效液相色谱(HPLC)中集成了多种保留机制,提高了复杂样品的分离灵活性。在这项研究中,用4-乙烯基-1,3-磺基丙基吡啶甜菜碱(VSPB)和十八烷基硅烷(C18)功能化了亚1 μ m多孔硅整体颗粒(孔径约35 nm),制备了一种新型混合模式固定相。采用x射线光电子能谱(XPS)、扫描电镜、透射电镜、固态13C核磁共振谱(NMR)、Brunauer-Emmett-Teller (BET)和Barrett-Joyner-Halenda (BJH)分析对固定相SMP-C18-SB进行了表征。采用浆液填料法将合成的固定相装入不锈钢柱(150×4.6 mm)中,顺序压力为80 ~ 100 MPA。SMP-C18-SB色谱柱对烷基苯、核苷、两性离子化合物、多肽和蛋白质具有优异的分离性能,这得益于C18和SB基团之间的疏水、氢键和亲水性相互作用。SMP-C18-SB柱在反相和亲水两种相互作用模式下均表现出优异的分离性能。此外,由于smp形状不规则,柱背压很低。SMP-C18-SB柱的重复性也很好,连续进样近1000次后,保留时间的日内相对标准偏差(rsd)为0.11%,峰面积的日内相对标准偏差(rsd)为1.02% (n = 10)。SMP-C18-SB色谱柱具有多种混合模式,可用于分离极性、非极性和两性离子化合物的复杂混合物。
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Journal of Chromatography A
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