Amnon G. Ortoll-Bloch, Ying Chen, Emily Hiralal, Nancy M. Washton, Karl T. Mueller, James De Yoreo, Jinhui Tao* and Lara A. Estroff*,
Hybrid organic–inorganic perovskite (HOIP) crystals are promising optoelectronic materials, but little is known about either the thermodynamic and kinetic controls on crystal growth or the underlying growth mechanism(s). Herein, we use fluid-cell atomic force microscopy (AFM) and solution nuclear magnetic resonance (NMR) spectroscopy to investigate the growth of the model HOIP crystal CH3NH3PbBr3 (MAPbBr3) and to determine how formic acid (HCOOH) modulates the thermodynamics and kinetics of growth. The results show that growth of MAPbBr3 in dimethylformamide (DMF) proceeds through the classical pathway by the spreading of molecular crystal steps generated at screw dislocations on the {100} surface. Temperature-dependent step velocity measurements demonstrate that with increasing concentration, HCOOH decreases the solubility of MAPbBr3. From the AFM data, we also determine the apparent kinetic coefficient (β) of step movement as a function of HCOOH concentration. 1H NMR measurements indicate that HCOOH increases the lifetime of the methylammonium (MA+) ions and promotes the association of MAPbBr3, thus tuning the solubility of the perovskite. We further propose that HCOOH alters the molecular tumbling motion and bulk diffusion of the MA+ ions, possibly via H-bonding. Our findings establish a direct correlation between the mesoscale crystal growth kinetics and the molecular-scale interactions between organic additives and constituent ions, providing unprecedented insights for developing predictive syntheses of HOIP crystals with defined size, crystal habit and shape, and defect distribution.
{"title":"Thermodynamic and Kinetic Modulation of Methylammonium Lead Bromide Crystallization Revealed by In Situ Monitoring","authors":"Amnon G. Ortoll-Bloch, Ying Chen, Emily Hiralal, Nancy M. Washton, Karl T. Mueller, James De Yoreo, Jinhui Tao* and Lara A. Estroff*, ","doi":"10.1021/acs.cgd.4c00008","DOIUrl":"10.1021/acs.cgd.4c00008","url":null,"abstract":"<p >Hybrid organic–inorganic perovskite (HOIP) crystals are promising optoelectronic materials, but little is known about either the thermodynamic and kinetic controls on crystal growth or the underlying growth mechanism(s). Herein, we use fluid-cell atomic force microscopy (AFM) and solution nuclear magnetic resonance (NMR) spectroscopy to investigate the growth of the model HOIP crystal CH<sub>3</sub>NH<sub>3</sub>PbBr<sub>3</sub> (MAPbBr<sub>3</sub>) and to determine how formic acid (HCOOH) modulates the thermodynamics and kinetics of growth. The results show that growth of MAPbBr<sub>3</sub> in dimethylformamide (DMF) proceeds through the classical pathway by the spreading of molecular crystal steps generated at screw dislocations on the {100} surface. Temperature-dependent step velocity measurements demonstrate that with increasing concentration, HCOOH decreases the solubility of MAPbBr<sub>3</sub>. From the AFM data, we also determine the apparent kinetic coefficient (β) of step movement as a function of HCOOH concentration. <sup>1</sup>H NMR measurements indicate that HCOOH increases the lifetime of the methylammonium (MA<sup>+</sup>) ions and promotes the association of MAPbBr<sub>3</sub>, thus tuning the solubility of the perovskite. We further propose that HCOOH alters the molecular tumbling motion and bulk diffusion of the MA<sup>+</sup> ions, possibly via H-bonding. Our findings establish a direct correlation between the mesoscale crystal growth kinetics and the molecular-scale interactions between organic additives and constituent ions, providing unprecedented insights for developing predictive syntheses of HOIP crystals with defined size, crystal habit and shape, and defect distribution.</p>","PeriodicalId":34,"journal":{"name":"Crystal Growth & Design","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141198091","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The interactions among monomers in an expanded π-conjugated group directly influence the geometry and, consequently, the macroscopic performance of the resulting crystalline material. Therefore, investigating the interaction mechanisms that impact the geometry of the expanded π-conjugated group is a crucial issue. Herein, we report three bridged-bipyridine halides (2,2′-dipyridylamine, 2,2′-dipyridylsulfonamide), denoted as (C5H4N)NH(C5H4NH)Cl·2H2O (1, Cc), (C5H4N)NH(C5H4NH)Br·2H2O (2, Cc), and (C5H4NH)2SBr2 (3, I41cd), to demonstrate the influence of intramolecular hydrogen bonds (HBs) on controlling the coplanarity of the two linked pyridine rings, thus impacting the macroscopic optical isotropy. Single crystal diffraction data reveal that the presence of different bridging atoms (S in 3 vs N in 1 and 2) led to distinct dihedral angles of 64.4 versus 2.1 and 1.8°, respectively. Experimental studies indicate that while compounds 1–3 all exhibit moderately strong second harmonic generation (0.32–1.1 × KDP), their birefringence (Δn) varies significantly. Compound 3 has a very small (Δncal.; obv.) value of (0.03cal.; 0.048obv.), whereas 1 and 2 have values 1 order of magnitude larger (0.26cal.; 0.25obv.)/1 and (0.30cal.; 0.28obv.)/2, at 550 nm. In-depth analyses demonstrate that this difference is attributed to the nearly coplanar alignment of the bridged-pyridine rings in 1 and 2, which is achieved by the intramolecular HBs that restrict the rotation of the N–C single bond.
{"title":"Intramolecular Hydrogen Bonds Enhance Structure Coplanarity, Resulting in Significant Birefringence in Bridged-Bipyridine Halides","authors":"WenJie He, Xin Liu, Ling Chen* and Li-Ming Wu*, ","doi":"10.1021/acs.cgd.4c00519","DOIUrl":"10.1021/acs.cgd.4c00519","url":null,"abstract":"<p >The interactions among monomers in an expanded π-conjugated group directly influence the geometry and, consequently, the macroscopic performance of the resulting crystalline material. Therefore, investigating the interaction mechanisms that impact the geometry of the expanded π-conjugated group is a crucial issue. Herein, we report three bridged-bipyridine halides (2,2′-dipyridylamine, 2,2′-dipyridylsulfonamide), denoted as (C<sub>5</sub>H<sub>4</sub>N)NH(C<sub>5</sub>H<sub>4</sub>NH)Cl·2H<sub>2</sub>O (<b>1</b>, <i>Cc</i>), (C<sub>5</sub>H<sub>4</sub>N)NH(C<sub>5</sub>H<sub>4</sub>NH)Br·2H<sub>2</sub>O (<b>2</b>, <i>Cc</i>), and (C<sub>5</sub>H<sub>4</sub>NH)<sub>2</sub>SBr<sub>2</sub> (<b>3</b>, <i>I</i>4<sub>1</sub><i>cd</i>), to demonstrate the influence of intramolecular hydrogen bonds (HBs) on controlling the coplanarity of the two linked pyridine rings, thus impacting the macroscopic optical isotropy. Single crystal diffraction data reveal that the presence of different bridging atoms (S in <b>3</b> vs N in <b>1</b> and <b>2</b>) led to distinct dihedral angles of 64.4 versus 2.1 and 1.8°, respectively. Experimental studies indicate that while compounds <b>1–3</b> all exhibit moderately strong second harmonic generation (0.32–1.1 × KDP), their birefringence (Δ<i>n</i>) varies significantly. Compound <b>3</b> has a very small (Δ<i>n</i><sub>cal.</sub>; <sub>obv.</sub>) value of (0.03<sub>cal.</sub>; 0.048<sub>obv.</sub>), whereas <b>1</b> and <b>2</b> have values 1 order of magnitude larger (0.26<sub>cal.</sub>; 0.25<sub>obv.</sub>)/<b>1</b> and (0.30<sub>cal.</sub>; 0.28<sub>obv.</sub>)/<b>2</b>, at 550 nm. In-depth analyses demonstrate that this difference is attributed to the nearly coplanar alignment of the bridged-pyridine rings in <b>1</b> and <b>2</b>, which is achieved by the intramolecular HBs that restrict the rotation of the N–C single bond.</p>","PeriodicalId":34,"journal":{"name":"Crystal Growth & Design","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141196896","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Rare-earth (RE)-doped transparent tellurite glass-ceramics (GCs) embedded with “anti-glass” crystallites not only exhibit superior emission properties but can also be a potential medium for nonlinear optical (NLO) applications. Both of these properties depend on their transparency. Keeping this in view, we aimed to elucidate the effect of Nd3+ ion concentration (0.5–2 mol %) on the crystallization mechanism of lanthanum-gadolinium-titanium-tellurite (LGTT) glass in retaining the transparency and NLO properties. XRD reveals the precipitation of (La/Nd)2T6O15 and Gd2Te6O15 “anti-glass” crystallites upon ceramization of these glasses. Particle-size-dependent DSC confirms competition between the growth of these two crystalline phases at higher Nd3+ concentration that aids in controlling crystal growth. The FE-SEM microstructures demonstrate a change in morphology of the crystallites from rectangular (1.5 μm) to spherical (120 nm) with increasing Nd2O3 concentration from 0.5 to 2 mol % and thereby retaining optical transparency (12% → 55%) in GCs. Photoluminescence spectra reveal a maximum emission intensity for 1 mol % of Nd2O3-doped glass; however, the lifetime is maximum (156 μs) for 0.5% Nd2O3 doping. This study also discloses an enhancement of third-order NLO properties as a function of Nd2O3 concentration in LGTT glasses under femtosecond laser excitation at 800–1200 nm due to resonant nonlinearity. Emission intensity and NLO responses are increased in the GCs compared to their parent glasses. A maximum nonlinear absorption coefficient (α2) of 4.986 × 10–10 m/W and nonlinear refractive index (n2) of 3.115× 10–17 m2/W has been obtained from LGTT-Nd2(GC-36h) GCs at 800 nm. GCs exhibits an optical limiting threshold of 4.14 mJ/cm2, suggesting its great potential for intense radiation shielding.
{"title":"Effect of Nd2O3 Concentration on Crystallization Mechanism and Third-Order Optical Nonlinearity of Lanthanide-Titanium-Tellurite Glass and Glass-Ceramics","authors":"Pritha Patra, Jagannath Gangareddy, Venugopal Rao Soma, Kaushik Biswas and Annapurna Kalyandurg*, ","doi":"10.1021/acs.cgd.4c00257","DOIUrl":"10.1021/acs.cgd.4c00257","url":null,"abstract":"<p >Rare-earth (RE)-doped transparent tellurite glass-ceramics (GCs) embedded with “<i>anti-glass</i>” crystallites not only exhibit superior emission properties but can also be a potential medium for nonlinear optical (NLO) applications. Both of these properties depend on their transparency. Keeping this in view, we aimed to elucidate the effect of Nd<sup>3+</sup> ion concentration (0.5–2 mol %) on the crystallization mechanism of lanthanum-gadolinium-titanium-tellurite (LGTT) glass in retaining the transparency and NLO properties. XRD reveals the precipitation of (La/Nd)<sub>2</sub>T<sub>6</sub>O<sub>15</sub> and Gd<sub>2</sub>Te<sub>6</sub>O<sub>15</sub> “<i>anti-glass</i>” crystallites upon ceramization of these glasses. Particle-size-dependent DSC confirms competition between the growth of these two crystalline phases at higher Nd<sup>3+</sup> concentration that aids in controlling crystal growth. The FE-SEM microstructures demonstrate a change in morphology of the crystallites from rectangular (1.5 μm) to spherical (120 nm) with increasing Nd<sub>2</sub>O<sub>3</sub> concentration from 0.5 to 2 mol % and thereby retaining optical transparency (12% → 55%) in GCs. Photoluminescence spectra reveal a maximum emission intensity for 1 mol % of Nd<sub>2</sub>O<sub>3</sub>-doped glass; however, the lifetime is maximum (156 μs) for 0.5% Nd<sub>2</sub>O<sub>3</sub> doping. This study also discloses an enhancement of third-order NLO properties as a function of Nd<sub>2</sub>O<sub>3</sub> concentration in LGTT glasses under femtosecond laser excitation at 800–1200 nm due to resonant nonlinearity. Emission intensity and NLO responses are increased in the GCs compared to their parent glasses. A maximum nonlinear absorption coefficient (α<sub>2</sub>) of 4.986 × 10<sup>–10</sup> m/W and nonlinear refractive index (<i>n</i><sub>2</sub>) of 3.115× 10<sup>–17</sup> m<sup>2</sup>/W has been obtained from LGTT-Nd2(GC-36h) GCs at 800 nm. GCs exhibits an optical limiting threshold of 4.14 mJ/cm<sup>2</sup>, suggesting its great potential for intense radiation shielding.</p>","PeriodicalId":34,"journal":{"name":"Crystal Growth & Design","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141196934","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The discovery of superelastic organic crystals capable of phototwisting and photobending represents a significant advance in the field of light-responsive materials. This research focused on the synthesis and characterization of crystals derived from trifluoromethyl-substituted acylhydrazone derivatives, known as TBMP. These crystals exhibited remarkable superelasticity when subjected to mechanical forces along their (010) crystallographic plane while showing a tendency to fracture along the (001) plane. Single-crystal analysis revealed that hydrogen bonds, especially C–H···F, C–H···O, and C–H···N interactions, are crucial in providing the crystals with superelastic properties. In addition, reversible E ↔ Z isomerization of TBMP molecules occurred under UV irradiation and heating, resulting in photomechanical (twisting or bending) and thermal recovery behavior of the crystals. Due to their exceptional properties, these crystals possess significant potential for application in robotic arm technology.
能够发生光扭曲和光弯曲的超弹性有机晶体的发现是光响应材料领域的一大进步。这项研究的重点是三氟甲基取代酰腙衍生物(又称 TBMP)晶体的合成和表征。这些晶体在沿其(010)结晶平面受到机械力时表现出显著的超弹性,而沿其(001)平面则有断裂倾向。单晶分析表明,氢键,尤其是C-H--F、C-H--O和C-H--N相互作用,是晶体具有超弹性特性的关键。此外,在紫外线照射和加热条件下,TBMP 分子会发生 E ↔ Z 的可逆异构化,从而导致晶体的光机械(扭曲或弯曲)和热恢复行为。由于其优异的性能,这些晶体在机械臂技术中具有巨大的应用潜力。
{"title":"Superelastic and Photomechanical Behavior of Acylhydrazone Derivative Crystals","authors":"Jiang Peng*, Jing Yang, Yuheng Zhao, Aisen Li* and Yuanhong Shu*, ","doi":"10.1021/acs.cgd.4c00501","DOIUrl":"10.1021/acs.cgd.4c00501","url":null,"abstract":"<p >The discovery of superelastic organic crystals capable of phototwisting and photobending represents a significant advance in the field of light-responsive materials. This research focused on the synthesis and characterization of crystals derived from trifluoromethyl-substituted acylhydrazone derivatives, known as <b>TBMP</b>. These crystals exhibited remarkable superelasticity when subjected to mechanical forces along their (010) crystallographic plane while showing a tendency to fracture along the (001) plane. Single-crystal analysis revealed that hydrogen bonds, especially C–H···F, C–H···O, and C–H···N interactions, are crucial in providing the crystals with superelastic properties. In addition, reversible <i>E</i> ↔ <i>Z</i> isomerization of <b>TBMP</b> molecules occurred under UV irradiation and heating, resulting in photomechanical (twisting or bending) and thermal recovery behavior of the crystals. Due to their exceptional properties, these crystals possess significant potential for application in robotic arm technology.</p>","PeriodicalId":34,"journal":{"name":"Crystal Growth & Design","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141198352","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Hafiz Muhammad Zohaib, Madiha Saqlain, Maroof Ahmad Khan, Samina Qamar, Sara Masood, Mubashar Ilyas, Yu-Meng Xu and Hui Li*,
Helix structure is a very important and fundamental structural feature of DNA and other biomaterials and is also one of the origins of chirality. Diversiform helix structures have been designed and constructed to understand the mechanism of helix formation. One of the challenges in this field is rationalizing single-stranded DNA and water helix. The possibility of water helix formation preceding the base pairing in DNA is an intriguing prospect. In this work, three coordination polymers based on the nucleotide dTMP have been designed and studied. Their single-crystal structures revealed that complexes 1 and 3 are 1D coordination polymers while complex 2 is a 2D coordination polymer. Complexes 1 and 2 are the coordination helixes. Importantly, the water helixes are enclosed in them. Both P and M water helixes exist in complex 1; only the M-water helix is in complex 2. It is worth noting that complex 3 exhibits the entanglement of coordination helixes and water helixes and then presents a pseudowater helix. The solidarity of the coordination helix and water helix in the crystal lattice has been investigated based on crystallography analysis. The building synthons limit the orientation of the nucleobase and lack adequate stereospace to confine the guest water molecules. A new type of nucleobase pairing, thymine–thymine, named T-motif, has been observed for the first time. The inherent and supramolecular chirality of these complexes have been discussed according to CD spectra in both solution and crystallized solid states. The water helix in complex 2 exhibits characteristic outcomes in the CD spectrum. The research results contribute to exploring and understanding the DNA structure and properties and the mechanism of helix formation.
螺旋结构是 DNA 和其他生物材料非常重要的基本结构特征,也是手性的起源之一。为了了解螺旋的形成机理,人们设计并构建了多样化的螺旋结构。这一领域的挑战之一是合理解释单链 DNA 和水螺旋。在 DNA 碱基配对之前形成水螺旋的可能性是一个引人入胜的前景。在这项工作中,我们设计并研究了三种基于核苷酸 dTMP 的配位聚合物。它们的单晶结构显示,复合物 1 和 3 是一维配位聚合物,而复合物 2 则是二维配位聚合物。复合物 1 和 2 是配位螺旋。重要的是,水螺旋被包裹在其中。络合物 1 中既有 P 水螺旋,也有 M 水螺旋;而络合物 2 中只有 M 水螺旋。值得注意的是,复合物 3 表现出配位螺旋和水螺旋的缠结,然后呈现出假水螺旋。根据晶体学分析,我们研究了配位螺旋和水螺旋在晶格中的团结关系。构建合子限制了核碱基的取向,并且缺乏足够的立体空间来限制客体水分子。首次观察到了一种新型核碱基配对,即胸腺嘧啶-胸腺嘧啶配对(T-motif)。根据溶液和结晶固体状态下的 CD 光谱,对这些复合物的固有和超分子手性进行了讨论。复合物 2 中的水螺旋在 CD 光谱中呈现出特征性结果。这些研究成果有助于探索和理解 DNA 的结构和特性以及螺旋的形成机理。
{"title":"Solidarity of the Coordination Helix and Water Helix in the Nucleotide Coordination Polymer","authors":"Hafiz Muhammad Zohaib, Madiha Saqlain, Maroof Ahmad Khan, Samina Qamar, Sara Masood, Mubashar Ilyas, Yu-Meng Xu and Hui Li*, ","doi":"10.1021/acs.cgd.4c00515","DOIUrl":"10.1021/acs.cgd.4c00515","url":null,"abstract":"<p >Helix structure is a very important and fundamental structural feature of DNA and other biomaterials and is also one of the origins of chirality. Diversiform helix structures have been designed and constructed to understand the mechanism of helix formation. One of the challenges in this field is rationalizing single-stranded DNA and water helix. The possibility of water helix formation preceding the base pairing in DNA is an intriguing prospect. In this work, three coordination polymers based on the nucleotide dTMP have been designed and studied. Their single-crystal structures revealed that complexes <b>1</b> and <b>3</b> are 1D coordination polymers while complex <b>2</b> is a 2D coordination polymer. Complexes <b>1</b> and <b>2</b> are the coordination helixes. Importantly, the water helixes are enclosed in them. Both <i>P</i> and <i>M</i> water helixes exist in complex <b>1</b>; only the <i>M</i>-water helix is in complex <b>2</b>. It is worth noting that complex <b>3</b> exhibits the entanglement of coordination helixes and water helixes and then presents a pseudowater helix. The solidarity of the coordination helix and water helix in the crystal lattice has been investigated based on crystallography analysis. The building synthons limit the orientation of the nucleobase and lack adequate stereospace to confine the guest water molecules. A new type of nucleobase pairing, thymine–thymine, named T-motif, has been observed for the first time. The inherent and supramolecular chirality of these complexes have been discussed according to CD spectra in both solution and crystallized solid states. The water helix in complex <b>2</b> exhibits characteristic outcomes in the CD spectrum. The research results contribute to exploring and understanding the DNA structure and properties and the mechanism of helix formation.</p>","PeriodicalId":34,"journal":{"name":"Crystal Growth & Design","volume":null,"pages":null},"PeriodicalIF":3.2,"publicationDate":"2024-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141196936","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The progress and growth of drug discovery and development (DDD) in the past five decades are reviewed in terms of the changing trends over the years. The importance of the Cambridge Structural Database (CSD) and the Protein Data Bank (PDB) starting in the 1990s brought in the phase of structure-based drug design (SBDD). The supramolecular synthon led to the heterosynthon, which became the cornerstone for crystal engineering of multicomponent cocrystals and salts (MCCS) as improved medicines. Numerous studies on enhancing the solubility and permeability of biopharmaceutics classification system (BCS) class II and IV drugs in the decades of 2000–2020 resulted in a paradigm shift toward supramolecular crystalline complexes as drug substances, namely, MCCS instead of molecule-based drugs, new chemical entity (NCE), or new molecular entity (NME) entries. With the numerical explosion in the number of possible druglike substances and their pharmaceutical cocrystals and salts as improved materials, artificial intelligence (AI), machine learning (ML), and neural networks (NN) were introduced as computational tools to accelerate drug discovery decision making. This review ends with a thought on integrating the abovementioned advances over the past three decades to propose a hierarchic model for DDD with varying levels of difficulty and complexity for success in different resource settings. With over a million crystal structures in the CSD and over 200 000 protein structures in the PDB, together with cheminformatics tools for prediction, synthesis, and crystallization, integrated drug discovery is poised for rapid advances in the future.
{"title":"Importance of Structural Databases, Molecular Pharmacophores, Supramolecular Heterosynthons, and Artificial Intelligence–Machine Learning–Neural Network Tools in Drug Discovery","authors":"Ashwini K. Nangia","doi":"10.1021/acs.cgd.4c00422","DOIUrl":"https://doi.org/10.1021/acs.cgd.4c00422","url":null,"abstract":"The progress and growth of drug discovery and development (DDD) in the past five decades are reviewed in terms of the changing trends over the years. The importance of the Cambridge Structural Database (CSD) and the Protein Data Bank (PDB) starting in the 1990s brought in the phase of structure-based drug design (SBDD). The supramolecular synthon led to the heterosynthon, which became the cornerstone for crystal engineering of multicomponent cocrystals and salts (MCCS) as improved medicines. Numerous studies on enhancing the solubility and permeability of biopharmaceutics classification system (BCS) class II and IV drugs in the decades of 2000–2020 resulted in a paradigm shift toward supramolecular crystalline complexes as drug substances, namely, MCCS instead of molecule-based drugs, new chemical entity (NCE), or new molecular entity (NME) entries. With the numerical explosion in the number of possible druglike substances and their pharmaceutical cocrystals and salts as improved materials, artificial intelligence (AI), machine learning (ML), and neural networks (NN) were introduced as computational tools to accelerate drug discovery decision making. This review ends with a thought on integrating the abovementioned advances over the past three decades to propose a hierarchic model for DDD with varying levels of difficulty and complexity for success in different resource settings. With over a million crystal structures in the CSD and over 200 000 protein structures in the PDB, together with cheminformatics tools for prediction, synthesis, and crystallization, integrated drug discovery is poised for rapid advances in the future.","PeriodicalId":34,"journal":{"name":"Crystal Growth & Design","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141196933","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Karolina Kopczyńska, Christopher J. Kingsbury, Elna Pidcock, Alexandru A. Moldovan and Izabela D. Madura*,
Caffeine shares many qualities with drugs and biomolecules and is an ideal model to explore the effectiveness of available crystal structure analysis tools for cocrystal structure comparison and design. Two new cocrystal structures of caffeine and phenylboronic acid are reported; these arrangements are compared with each other and the broader crystallographic literature for hydrogen bonding, aromatic interactions, and predicted and measured crystal morphology.
This research uses caffeine cocrystals to showcase modern crystal structure analysis tools and highlight best practices in cocrystal polymorphism studies.
{"title":"A Case of Unusual Cocrystal Polymorphs of Caffeine and Phenylboronic Acid: Cambridge Structural Database Tools in Action","authors":"Karolina Kopczyńska, Christopher J. Kingsbury, Elna Pidcock, Alexandru A. Moldovan and Izabela D. Madura*, ","doi":"10.1021/acs.cgd.4c00378","DOIUrl":"10.1021/acs.cgd.4c00378","url":null,"abstract":"<p >Caffeine shares many qualities with drugs and biomolecules and is an ideal model to explore the effectiveness of available crystal structure analysis tools for cocrystal structure comparison and design. Two new cocrystal structures of caffeine and phenylboronic acid are reported; these arrangements are compared with each other and the broader crystallographic literature for hydrogen bonding, aromatic interactions, and predicted and measured crystal morphology.</p><p >This research uses caffeine cocrystals to showcase modern crystal structure analysis tools and highlight best practices in cocrystal polymorphism studies.</p>","PeriodicalId":34,"journal":{"name":"Crystal Growth & Design","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/acs.cgd.4c00378","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141196894","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Qian Liu*, Bojian Zhou, Jiageng Liu and Shaolong Jiang*,
Two-dimensional (2D) tetragonal FeTe is expected to show attractive properties in different fields. However, the synthesis of high-quality 2D tetragonal FeTe via a facile approach remains challenging. Herein, we propose a facile chemical vapor deposition (CVD) strategy to realize the preparation of ultrathin tetragonal FeTe flakes on a Au foil substrate. The tetragonal FeTe flakes are as thin as 3.9 nm and have a high crystalline quality. The as-grown 2D tetragonal FeTe is shown to be a wonderful hydrogen evolution reaction (HER) catalyst with good activity and stability. This research injects new vitality into synthesizing 2D tetragonal FeTe for electrocatalytic HER applications.
{"title":"Two-Dimensional Tetragonal FeTe Flakes on Gold Foil for Hydrogen Evolution Reaction","authors":"Qian Liu*, Bojian Zhou, Jiageng Liu and Shaolong Jiang*, ","doi":"10.1021/acs.cgd.4c00470","DOIUrl":"10.1021/acs.cgd.4c00470","url":null,"abstract":"<p >Two-dimensional (2D) tetragonal FeTe is expected to show attractive properties in different fields. However, the synthesis of high-quality 2D tetragonal FeTe via a facile approach remains challenging. Herein, we propose a facile chemical vapor deposition (CVD) strategy to realize the preparation of ultrathin tetragonal FeTe flakes on a Au foil substrate. The tetragonal FeTe flakes are as thin as 3.9 nm and have a high crystalline quality. The as-grown 2D tetragonal FeTe is shown to be a wonderful hydrogen evolution reaction (HER) catalyst with good activity and stability. This research injects new vitality into synthesizing 2D tetragonal FeTe for electrocatalytic HER applications.</p>","PeriodicalId":34,"journal":{"name":"Crystal Growth & Design","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141196825","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Amy Jayne Thompson, Jacob John Whittaker, Aidan James Brock, Hydar Ali Baanoon AL-Fayaad, Kasun Sankalpa Athukorala Arachichage, Michael Craig Pfrunder, John Cameron McMurtrie* and Jack Kay Clegg*,
Unequivocally establishing chemical connectivity and ultimately chemical identity is of central importance to all branches of science and particularly chemistry. Accordingly, the determination of a crystal structure is often considered the “gold standard” as this technique can unambiguously establish both the connectivity and identity of a compound. Crystal structure data, however, are prone to misinterpretation, and the increasing development of automatic data processing and verification has the potential to result in an epidemic of incorrectly modeled crystal structures. Here, we present a series of case studies where structures were modeled to current publication standards with the incorrect chemical composition. It is essential that researchers, referees, editors, and the scientific community be vigilant in upholding the scientific method.
{"title":"Is a Crystal Structure Enough? Reflecting on the Reliability of SCXRD in the Age of Automation","authors":"Amy Jayne Thompson, Jacob John Whittaker, Aidan James Brock, Hydar Ali Baanoon AL-Fayaad, Kasun Sankalpa Athukorala Arachichage, Michael Craig Pfrunder, John Cameron McMurtrie* and Jack Kay Clegg*, ","doi":"10.1021/acs.cgd.4c00574","DOIUrl":"10.1021/acs.cgd.4c00574","url":null,"abstract":"<p >Unequivocally establishing chemical connectivity and ultimately chemical identity is of central importance to all branches of science and particularly chemistry. Accordingly, the determination of a crystal structure is often considered the “gold standard” as this technique can unambiguously establish both the connectivity and identity of a compound. Crystal structure data, however, are prone to misinterpretation, and the increasing development of automatic data processing and verification has the potential to result in an epidemic of incorrectly modeled crystal structures. Here, we present a series of case studies where structures were modeled to current publication standards with the incorrect chemical composition. It is essential that researchers, referees, editors, and the scientific community be vigilant in upholding the scientific method.</p>","PeriodicalId":34,"journal":{"name":"Crystal Growth & Design","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141198034","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Copper-based halide perovskites are evolving as alternative materials to lead-based perovskites. Herein, we report the synthesis of double organic cation copper-halide perovskites (C4H9NH3)x(3-BrC3H6NH3)2–xCuCl2+xBr2–x (x = 0.7, 1.0, 1.3, 1.6, and 1.9). The crystal structures were studied by powder X-ray diffraction (XRD). The optical properties of the perovskite thin films were investigated by UV–vis absorption spectroscopy and spectroscopic ellipsometry. It was demonstrated that the use of multiple cations is an effective compositional strategy to control the structural properties of two-dimensional (2D) perovskites. In addition, the thermochromism was also investigated by differential scanning calorimetry and in situ temperature-dependent powder XRD. This topic opens up a path for 2D copper-based halide perovskites to adjust their optical properties via spacer cation engineering. This research inspires future research interests in designing environmentally friendly 2D metal halide perovskites.
{"title":"Tunable Optical Properties of Two-Dimensional Copper-Based Halide Perovskites with Mixed Organic Cations","authors":"Jing Cao*, Xiaoyu Xiong and Ji Zhou, ","doi":"10.1021/acs.cgd.4c00522","DOIUrl":"10.1021/acs.cgd.4c00522","url":null,"abstract":"<p >Copper-based halide perovskites are evolving as alternative materials to lead-based perovskites. Herein, we report the synthesis of double organic cation copper-halide perovskites (C<sub>4</sub>H<sub>9</sub>NH<sub>3</sub>)<sub><i>x</i></sub>(3-BrC<sub>3</sub>H<sub>6</sub>NH<sub>3</sub>)<sub>2–<i>x</i></sub>CuCl<sub>2</sub><sub>+<i>x</i></sub>Br<sub>2–<i>x</i></sub> (<i>x</i> = 0.7, 1.0, 1.3, 1.6, and 1.9). The crystal structures were studied by powder X-ray diffraction (XRD). The optical properties of the perovskite thin films were investigated by UV–vis absorption spectroscopy and spectroscopic ellipsometry. It was demonstrated that the use of multiple cations is an effective compositional strategy to control the structural properties of two-dimensional (2D) perovskites. In addition, the thermochromism was also investigated by differential scanning calorimetry and in situ temperature-dependent powder XRD. This topic opens up a path for 2D copper-based halide perovskites to adjust their optical properties via spacer cation engineering. This research inspires future research interests in designing environmentally friendly 2D metal halide perovskites.</p>","PeriodicalId":34,"journal":{"name":"Crystal Growth & Design","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-05-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141196893","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}