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Recent Advances in the Application of Machine Learning to Crystal Behavior and Crystallization Process Control 将机器学习应用于晶体行为和结晶过程控制的最新进展
IF 3.8 2区 化学 Q1 Physics and Astronomy Pub Date : 2024-06-06 DOI: 10.1021/acs.cgd.3c01251
Meijin Lu, Silin Rao, Hong Yue, Junjie Han and Jingtao Wang*, 

Crystals are integral to a variety of industrial applications, such as the development of pharmaceuticals and advancements in material science. To anticipate crystal behavior and pinpoint effective crystallization techniques, a thorough investigation of crystal structures, properties, and the associated processes is essential. However, conventional methods like experimental procedures and quantum mechanics calculations, while crucial, can be expensive and time-consuming. In response, machine learning has risen as an effective alternative, complementing the traditional approaches based on quantum mechanics and classical force fields. In the recent years, the deployment of machine learning in the realm of crystallization has yielded notable progress. This review offers a concise overview of the application of machine learning techniques in crystallization, focusing on the past five years. Our analysis of the literature indicates that machine learning has accelerated the prediction of crystal structures by streamlining the generation and evaluation of structures. Additionally, it has facilitated the prediction of key crystal properties such as solubility, melting point, and habit. The review further explores the role of machine learning in refining the control and optimization of crystallization processes, highlighting the restrictions of conventional algorithms and sensing technologies. The advantages of end-to-end processing for enhancing the accuracy of predictions and the combination of data-driven with mechanism-based models for robustness are also considered. In summary, this review provides insights into the current state of machine learning in the field of intelligent crystallization and suggests pathways for future research and development.

晶体与各种工业应用密不可分,例如药品的开发和材料科学的进步。要预测晶体行为并确定有效的结晶技术,就必须对晶体结构、性质和相关过程进行深入研究。然而,实验程序和量子力学计算等传统方法虽然至关重要,但却既昂贵又耗时。为此,机器学习成为一种有效的替代方法,对基于量子力学和经典力场的传统方法进行了补充。近年来,机器学习在结晶领域的应用取得了显著进展。本综述简要概述了过去五年机器学习技术在结晶领域的应用。我们对文献的分析表明,机器学习通过简化结构的生成和评估,加快了晶体结构的预测。此外,机器学习还促进了对溶解度、熔点和习性等关键晶体属性的预测。综述进一步探讨了机器学习在完善控制和优化结晶过程中的作用,强调了传统算法和传感技术的局限性。此外,还考虑了端到端处理在提高预测准确性方面的优势,以及将数据驱动模型与基于机理的模型相结合以提高稳健性方面的优势。总之,本综述深入分析了智能结晶领域机器学习的现状,并提出了未来研究和发展的方向。
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引用次数: 0
Perhalogenated Anilines as Bifunctional Donors of Hydrogen and Halogen Bonds in Cocrystals with Ditopic Nitrogen-Containing Acceptors 全卤化苯胺作为与二位含氮受体共晶体中氢键和卤素键的双功能供体
IF 3.8 2区 化学 Q1 Physics and Astronomy Pub Date : 2024-06-06 DOI: 10.1021/acs.cgd.4c00315
Nea Baus Topić, Sibananda G. Dash, Edi Topić, Mihails Arhangelskis* and Dominik Cinčić*, 

In this study, we examine the experimental and theoretical capabilities of two perhalogenated anilines, 2,3,5,6-tetrafluoro-4-bromoaniline (btfa) and 2,3,5,6-tetrafluoro-4-iodoaniline (itfa) as hydrogen and halogen bond donors. A series of 11 cocrystals derived from the two anilines and selected ditopic nitrogen-containing acceptors (4,4′-bipyridine, 1,2-bis(4-pyridyl)ethane, and 1,4-diazabicyclo[2.2.2]octane) in 1:1 and 2:1 stoichiometries were prepared by liquid-assisted grinding and crystallization from solution. Crystallographic analysis revealed bifunctional donor properties in both anilines. The dominant supramolecular interaction in four cocrystals of btfa is the N–H···Nacceptor hydrogen bond between btfa and acceptor molecules, while in the one remaining cocrystal, donor and acceptor molecules are connected via the N–H···Nacceptor hydrogen bond and the Br···Nacceptor halogen bond. In two cocrystals of itfa, the dominant supramolecular interaction is the I···Nacceptor halogen bond between itfa and acceptor molecules, while in the remaining four cocrystals, donor and acceptor molecules are additionally connected by the N–H···Nacceptor hydrogen bond. Periodic density-functional theory (DFT) calculations have been conducted to assess the formation energies of these cocrystals and the strengths of the established halogen and hydrogen bonds. Molecular DFT calculations on btfa and itfa indicate that the differences in electrostatic potential between the competing sites on the molecules are 261.6 and 157.0 kJ mol–1 e–1, respectively. The findings suggest that itfa, with a smaller electrostatic potential difference between donor sites, is more predisposed to act as a bifunctional donor.

The experimental and theoretical capability of two perhalogenated anilines, 2,3,5,6-tetrafluoro-4-bromoaniline and 2,3,5,6-tetrafluoro-4-iodoaniline, as hydrogen and halogen bond donors have been explored by cocrystallization with 4,4′-bipyridine, 1,2-bis(4-pyridyl)ethane, and 1,4-diazabicyclo[2.2.2]octane.

在这项研究中,我们考察了 2,3,5,6- 四氟-4-溴苯胺(btfa)和 2,3,5,6- 四氟-4-碘苯胺(itfa)这两种全卤化苯胺作为氢键和卤素键供体的实验和理论能力。通过液体辅助研磨和从溶液中结晶的方法,以 1:1 和 2:1 的比例从这两种苯胺和选定的二价含氮受体(4,4′-联吡啶、1,2-双(4-吡啶基)乙烷和 1,4-二氮杂双环[2.2.2]辛烷)中制备出了 11 种系列共晶体。结晶分析表明,这两种苯胺都具有双功能供体特性。在四种 btfa 共晶体中,主要的超分子相互作用是 btfa 分子和受体分子之间的 N-H-Nacceptor 氢键,而在剩下的一种共晶体中,供体分子和受体分子通过 N-H-Nacceptor 氢键和 Br-Nacceptor 卤素键连接。在两种 itfa 共晶体中,主要的超分子相互作用是 itfa 分子与受体分子之间的 I--受体卤键,而在其余四种共晶体中,供体分子与受体分子之间还通过 N-H--受体氢键连接。为了评估这些共晶体的形成能量以及已建立的卤素键和氢键的强度,我们进行了周期密度泛函理论(DFT)计算。对 btfa 和 itfa 的分子 DFT 计算表明,分子上的竞争位点之间的静电位差分别为 261.6 和 157.0 kJ mol-1 e-1。研究结果表明,itfa 供体位点之间的静电位差较小,更倾向于作为双功能供体。通过与 4,4′-联吡啶、1,2-双(4-吡啶基)乙烷和 1,4-二氮杂双环[2.2.2]辛烷共结晶,探讨了 2,3,5,6-四氟-4-溴苯胺和 2,3,5,6-四氟-4-碘苯胺这两种全卤化苯胺作为氢键和卤素键供体的实验和理论能力。
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引用次数: 0
Mono- and Bis-Carbonyl Hypoiodites of the Tertiary Amines Quinuclidine and DABCO 叔胺奎宁环和 DABCO 的单羰基和双羰基次碘化物
IF 3.8 2区 化学 Q1 Physics and Astronomy Pub Date : 2024-06-06 DOI: 10.1021/acs.cgd.4c00377
Shilin Yu, Kari Rissanen* and Jas S. Ward*, 

Mono- and bis-carbonyl hypoiodites incorporating the tertiary amines quinuclidine (1ae) or 1,4-diazabicyclo[2.2.2]octane (DABCO; 2a, 2b, and 2e), respectively, have been synthesized and represent the first examples of hypoiodites stabilized by alkyl amines rather than aromatic Lewis bases (e.g., pyridine derivatives). These highly reactive complexes have been characterized in the solid state by SCXRD and DFT calculations. The DABCO hypoiodite derivatives are rare examples of ditopic bis(O–I–N) complexes and were found to display unexpected bonding parameters relative to iodine(I) complexes in which the DABCO is coordinating in a monotopic manner.

Mono- and bis-carbonyl hypoiodites incorporating the tertiary amines quinuclidine or 1,4-diazabicyclo[2.2.2]octane have been synthesized and represent the first examples of hypoiodites stabilized by alkyl amines rather than aromatic Lewis bases.

我们合成了分别含有叔胺奎宁环(1a-e)或 1,4-二氮杂双环[2.2.2]辛烷(DABCO;2a、2b 和 2e)的单羰基和双羰基次碘化物,它们代表了由烷基胺而不是芳香族路易斯碱(如吡啶衍生物)稳定的次碘化物的首个实例。通过 SCXRD 和 DFT 计算,对这些高活性复合物的固态特性进行了描述。DABCO 次碘酸根衍生物是罕见的二配位双(O-I-N)络合物,与 DABCO 以单配位方式配位的碘(I)络合物相比,DABCO 次碘酸根衍生物显示出意想不到的成键参数。我们合成了含有叔胺奎宁环或 1,4-二氮杂双环[2.2.2]辛烷的单羰基和双羰基次碘化物,它们是由烷基胺而不是芳香族路易斯碱稳定的次碘化物的首例。
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引用次数: 0
Exploration of Solid-State [2 + 2] Photodimerization in the Coordination Polymers of Rigid and Linear Diene: Single-Crystal-to-Single-Crystal Transformation of a 2D Coordination Polymer to a 3D Coordination Polymer 探索刚性和线性二烯配位聚合物中的固态 [2 + 2] 光二聚化:二维配位聚合物到三维配位聚合物的单晶到单晶转化
IF 3.8 2区 化学 Q1 Physics and Astronomy Pub Date : 2024-06-05 DOI: 10.1021/acs.cgd.4c00614
Shaheen Sultana, Rajorshi Mandal and Kumar Biradha*, 

Coordination polymers serve as an important platform to promote highly selective solid-state reactions between organic struts. A new class of amide-containing cyclobutane molecules has been synthesized using a [2 + 2] photodimerization reaction in coordination polymers (CPs) of rigid and linear diene 3,3′-(1,4-phenylene)bis(N-(3-pyridyl)acrylamide), 4PMA, with rigid as well as flexible dicarboxylates as coligands. Four Co(II) CPs studied here produce 2D layers with rhomboidal grids (isophthalate (CP-1) and p-carboxy cinnamate (CP-2)), while p-phenylene acrylate (CP-3) yields a 3D framework with cds topology and p-phenylene diacetate forms 2D layers with a bimetallic secondary building unit (SBU). The [2 + 2] cycloaddition reaction upon exposure to 365 nm UV light on the methanol solvate of 4PMA remained elusive despite a favorable polymeric alignment in its crystal structure. Single crystals of CPs upon irradiation resulted in photodimerization; however, the crystal structure suggests polymerization (CP-1 and CP-2) or no reaction (CP-3). This unusual behavior is attributed to deviations in geometrical parameters from the ideal, serving as the driving force behind the photodimerization reaction. Nevertheless, the 2D CP of CP-4 exhibited resilience during dimerization, leading to the formation of a 3D coordination polymer of the fsc net of CP-4P through a single-crystal-to-single-crystal structural transformation. The separated dimer product displays quenched photoluminescence and blue-shifted spectra compared with the monomer.

配位聚合物是促进有机支链间高选择性固态反应的重要平台。在刚性和线性二烯 3,3′-(1,4-亚苯基)双(N-(3-吡啶基)丙烯酰胺,4PMA)的配位聚合物 (CPs) 中,以刚性和柔性二羧酸盐为配位体,通过[2 + 2]光二聚化反应合成了一类新的含酰胺环丁烷分子。本文研究的四种 Co(II) CP 生成了具有斜方形网格的二维层(异酞酸酯(CP-1)和对羧基肉桂酸酯(CP-2)),而对苯丙烯酸酯(CP-3)生成了具有 cds 拓扑结构的三维框架,对苯二酸酯则形成了具有双金属二级构建单元(SBU)的二维层。尽管 4PMA 的晶体结构中存在有利的聚合物排列,但在 365 纳米紫外线照射下,4PMA 的甲醇溶物仍无法发生[2 + 2]环化反应。氯化石蜡的单晶体在照射后会发生光二聚反应;然而,晶体结构表明会发生聚合反应(CP-1 和 CP-2)或不发生反应(CP-3)。这种不寻常的行为归因于几何参数偏离了理想状态,成为光二聚反应背后的驱动力。尽管如此,CP-4 的二维氯化石蜡在二聚过程中表现出了弹性,通过单晶到单晶的结构转变,形成了 CP-4P 的 fsc 网的三维配位聚合物。与单体相比,分离的二聚体产物显示出淬灭的光致发光和蓝移光谱。
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引用次数: 0
Tuning of Antiferromagnetic Phase in La1–xSrxMnO3 Epitaxial Thin Films by Polymer-Assisted Deposition Synthesis 通过聚合物辅助沉积合成调谐 La1-xSrxMnO3 磊晶薄膜中的反铁磁相
IF 3.8 2区 化学 Q1 Physics and Astronomy Pub Date : 2024-06-04 DOI: 10.1021/acs.cgd.4c00229
Meritxell Toda-Casaban*, Carlos Frontera, Alberto Pomar, Javier Herrero-Martín, José Antonio Alonso, Lluís Balcells, Narcís Mestres and Benjamín Martínez, 

Epitaxial thin films of the La1–xSrxMnO3 system, spanning a wide range of compositions (0.5 ≤ x ≤ 0.65), have been prepared, using the polymer-assisted deposition method, on SrTiO3 (100) substrates. The primary objective was to achieve the highly stable A-type antiferromagnetic (AF) phase associated with x = 0.5. However, the electronic and magnetic properties of the samples, with different substitution levels of La with Sr, exhibit deviations from the anticipated behavior according to the bulk phase diagram. Employing X-ray absorption spectroscopy, we demonstrate that the effective 0.5:0.5 ratio of Mn3+:Mn4+ is actually attained in the sample with x = 0.65, suggesting the presence of an alternative charge compensation mechanism. High oxygen pressure annealing processes allow us to demonstrate that oxygen vacancies, generated to accommodate the epitaxial structural strain, are responsible for the partial charge compensation and the observed deviations from the bulk phase diagram.

Epitaxial thin films of the La1−xSrxMnO3 system (0.5 ≤ x ≤ 0.65) have been prepared by PAD to achieve the A-type antiferromagnetic (AF) phase (x = 0.5). However, the samples show deviations from the bulk phase diagram, and this AF phase is found for x = 0.65, according to XAS. The presence of oxygen vacancies can justify these results.

利用聚合物辅助沉积法,在 SrTiO3 (100) 基底上制备了 La1-xSrxMnO3 系统的外延薄膜,其成分范围很广(0.5 ≤ x ≤ 0.65)。其主要目的是获得与 x = 0.5 相关的高度稳定的 A 型反铁磁(AF)相。然而,根据体相图,样品的电子和磁性能在 La 与 Sr 的不同替代水平下表现出与预期行为的偏差。利用 X 射线吸收光谱,我们证明了在 x = 0.65 的样品中,Mn3+:Mn4+ 的有效比例实际上达到了 0.5:0.5,这表明存在另一种电荷补偿机制。高氧压退火过程使我们能够证明,为适应外延结构应变而产生的氧空位是部分电荷补偿和观察到的体相图偏差的原因。
{"title":"Tuning of Antiferromagnetic Phase in La1–xSrxMnO3 Epitaxial Thin Films by Polymer-Assisted Deposition Synthesis","authors":"Meritxell Toda-Casaban*,&nbsp;Carlos Frontera,&nbsp;Alberto Pomar,&nbsp;Javier Herrero-Martín,&nbsp;José Antonio Alonso,&nbsp;Lluís Balcells,&nbsp;Narcís Mestres and Benjamín Martínez,&nbsp;","doi":"10.1021/acs.cgd.4c00229","DOIUrl":"10.1021/acs.cgd.4c00229","url":null,"abstract":"<p >Epitaxial thin films of the La<sub>1–<i>x</i></sub>Sr<sub><i>x</i></sub>MnO<sub>3</sub> system, spanning a wide range of compositions (0.5 ≤ <i>x</i> ≤ 0.65), have been prepared, using the polymer-assisted deposition method, on SrTiO<sub>3</sub> (100) substrates. The primary objective was to achieve the highly stable A-type antiferromagnetic (AF) phase associated with <i>x</i> = 0.5. However, the electronic and magnetic properties of the samples, with different substitution levels of La with Sr, exhibit deviations from the anticipated behavior according to the bulk phase diagram. Employing X-ray absorption spectroscopy, we demonstrate that the effective 0.5:0.5 ratio of Mn<sup>3+</sup>:Mn<sup>4+</sup> is actually attained in the sample with <i>x</i> = 0.65, suggesting the presence of an alternative charge compensation mechanism. High oxygen pressure annealing processes allow us to demonstrate that oxygen vacancies, generated to accommodate the epitaxial structural strain, are responsible for the partial charge compensation and the observed deviations from the bulk phase diagram.</p><p >Epitaxial thin films of the La<sub>1−<i>x</i></sub>Sr<sub><i>x</i></sub>MnO<sub>3</sub> system (0.5 ≤ <i>x</i> ≤ 0.65) have been prepared by PAD to achieve the A-type antiferromagnetic (AF) phase (<i>x</i> = 0.5). However, the samples show deviations from the bulk phase diagram, and this AF phase is found for <i>x</i> = 0.65, according to XAS. The presence of oxygen vacancies can justify these results.</p>","PeriodicalId":34,"journal":{"name":"Crystal Growth & Design","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/acs.cgd.4c00229","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141259450","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Design of a Library of Azo-pyridinic Derivatives as Building Blocks for Photoresponsive Materials 设计偶氮吡啶衍生物库,作为光致发光材料的基石
IF 3.8 2区 化学 Q1 Physics and Astronomy Pub Date : 2024-06-04 DOI: 10.1021/acs.cgd.4c00380
Michele Prencipe, Paolo P. Mazzeo*, Riccardo Montis, Bruno Famiani, Giuditta Cicconi and Alessia Bacchi*, 

Azo-pyridinic derivatives are renowned for their ability to undergo reversible molecular switching when exposed to light. By combining the photoresponsive properties of azo-benzene with the supramolecular capabilities of pyridyl groups, azo-pyridines offer a route to develop multifunctional responsive materials through noncovalent interactions or reversible chemical reactions. Although azo-pyridine and its derivatives are commonly used in crystal engineering, their spectroscopic characterization is typically limited in solution and only poor attention has been given to their photoresponsive behavior in the solid state. Here, we present a library of azo-pyridinic derivatives designed as potential photoresponsive compounds with different spectroscopic behaviors based on the chemical decoration of the phenyl ring. Comprehensive characterization, including crystal structure, thermal analysis, and spectroscopic analysis, was performed for all compounds. Finally, their trans-to-cis isomerization propensity in the solid state is correlated with their crystal structures.

偶氮吡啶衍生物因在光照下能够发生可逆的分子转换而闻名于世。通过将偶氮苯的光致反应特性与吡啶基的超分子能力相结合,偶氮吡啶提供了一条通过非共价相互作用或可逆化学反应开发多功能反应材料的途径。尽管偶氮吡啶及其衍生物常用于晶体工程中,但它们的光谱特性通常仅限于溶液中,而且人们对它们在固态中的光致响应行为关注甚少。在此,我们介绍了一个偶氮吡啶衍生物库,该库根据苯基环的化学装饰设计成具有不同光谱行为的潜在光致化合物。我们对所有化合物进行了全面的表征,包括晶体结构、热分析和光谱分析。最后,它们在固态下的反式-顺式异构化倾向与其晶体结构相关联。
{"title":"Design of a Library of Azo-pyridinic Derivatives as Building Blocks for Photoresponsive Materials","authors":"Michele Prencipe,&nbsp;Paolo P. Mazzeo*,&nbsp;Riccardo Montis,&nbsp;Bruno Famiani,&nbsp;Giuditta Cicconi and Alessia Bacchi*,&nbsp;","doi":"10.1021/acs.cgd.4c00380","DOIUrl":"10.1021/acs.cgd.4c00380","url":null,"abstract":"<p >Azo-pyridinic derivatives are renowned for their ability to undergo reversible molecular switching when exposed to light. By combining the photoresponsive properties of azo-benzene with the supramolecular capabilities of pyridyl groups, azo-pyridines offer a route to develop multifunctional responsive materials through noncovalent interactions or reversible chemical reactions. Although azo-pyridine and its derivatives are commonly used in crystal engineering, their spectroscopic characterization is typically limited in solution and only poor attention has been given to their photoresponsive behavior in the solid state. Here, we present a library of azo-pyridinic derivatives designed as potential photoresponsive compounds with different spectroscopic behaviors based on the chemical decoration of the phenyl ring. Comprehensive characterization, including crystal structure, thermal analysis, and spectroscopic analysis, was performed for all compounds. Finally, their <i>trans</i>-to-<i>cis</i> isomerization propensity in the solid state is correlated with their crystal structures.</p>","PeriodicalId":34,"journal":{"name":"Crystal Growth & Design","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141259619","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Similarity and Differences of Dasatinib Solvates: A Crystallographic Perspective 达沙替尼溶胶的相似性与差异性:晶体学视角
IF 3.8 2区 化学 Q1 Physics and Astronomy Pub Date : 2024-06-04 DOI: 10.1021/acs.cgd.4c00248
Aija Trimdale-Deksne, Ilze Grante, Anatoly Mishnev*, Lia̅na Orola and Agris Be̅rziṇš*, 

Detailed crystallographic and computational analysis of solvates of dasatinib (DAS), an inhibitor of multiple tyrosine kinases, was performed by confirming the high structural similarity of most of the DAS crystal structures and identifying the differences in molecular conformation, hydrogen bonding, and molecular packing. The crystal structures of 14 new DAS solvates are presented, allowing the crystallographic analysis of 23 DAS solvates and one nonsolvated phase. The analysis of molecular conformation revealed that in most of the structures DAS adopts three slightly different conformations, even though computational analysis indicated the existence of alternative energetically competitive conformations. In almost all structures, DAS molecules form identical hydrogen-bonded layers. The lack of structural variation is believed to be the result of the limited ways for efficient packing of the large sized and specifically shaped DAS molecules. Detailed analysis, however, revealed three similar but somewhat different ways these layers are packed, resulting in the classification of DAS solvates in three structure groups I, II, and III. The different arrangements of the layers result in different hydrogen bonds formed by O1–H and the space available for the solvent, but, interestingly, this is not linked with the exact DAS conformation or solvent functionality, properties, or bonding with DAS molecules.

对多种酪氨酸激酶抑制剂达沙替尼(DAS)的溶胶进行了详细的晶体学和计算分析,确认了大多数 DAS 晶体结构的高度相似性,并确定了分子构象、氢键和分子堆积的差异。该研究展示了 14 种新的 DAS 溶剂的晶体结构,从而对 23 种 DAS 溶剂和一种非溶解相进行了晶体学分析。对分子构象的分析表明,在大多数结构中,DAS 采用了三种略有不同的构象,尽管计算分析表明存在其他能量竞争性构象。在几乎所有结构中,DAS 分子都形成了相同的氢键层。结构缺乏变化被认为是由于大尺寸和特殊形状的 DAS 分子有效堆积的途径有限。然而,详细分析发现,这些层的堆积方式有三种相似但略有不同的方式,因此将 DAS 溶剂分为 I、II 和 III 三个结构组。层的不同排列方式导致 O1-H 形成的氢键和溶剂的可用空间不同,但有趣的是,这与 DAS 的确切构象或溶剂的功能、特性或与 DAS 分子的结合并无关联。
{"title":"Similarity and Differences of Dasatinib Solvates: A Crystallographic Perspective","authors":"Aija Trimdale-Deksne,&nbsp;Ilze Grante,&nbsp;Anatoly Mishnev*,&nbsp;Lia̅na Orola and Agris Be̅rziṇš*,&nbsp;","doi":"10.1021/acs.cgd.4c00248","DOIUrl":"10.1021/acs.cgd.4c00248","url":null,"abstract":"<p >Detailed crystallographic and computational analysis of solvates of dasatinib (DAS), an inhibitor of multiple tyrosine kinases, was performed by confirming the high structural similarity of most of the DAS crystal structures and identifying the differences in molecular conformation, hydrogen bonding, and molecular packing. The crystal structures of 14 new DAS solvates are presented, allowing the crystallographic analysis of 23 DAS solvates and one nonsolvated phase. The analysis of molecular conformation revealed that in most of the structures DAS adopts three slightly different conformations, even though computational analysis indicated the existence of alternative energetically competitive conformations. In almost all structures, DAS molecules form identical hydrogen-bonded layers. The lack of structural variation is believed to be the result of the limited ways for efficient packing of the large sized and specifically shaped DAS molecules. Detailed analysis, however, revealed three similar but somewhat different ways these layers are packed, resulting in the classification of DAS solvates in three structure groups I, II, and III. The different arrangements of the layers result in different hydrogen bonds formed by O1–H and the space available for the solvent, but, interestingly, this is not linked with the exact DAS conformation or solvent functionality, properties, or bonding with DAS molecules.</p>","PeriodicalId":34,"journal":{"name":"Crystal Growth & Design","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-06-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141259370","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Solid-State Assembly and Photoluminescent Behavior of 5-(9H-Carbazol-9-yl)isophthalic Acid–Based Molecular Crystals Influenced by Solvents and Organic Counterparts 受溶剂和有机对应物影响的 5-(9H-咔唑-9-基)间苯二甲酸分子晶体的固态组装和光致发光行为
IF 3.8 2区 化学 Q1 Physics and Astronomy Pub Date : 2024-06-03 DOI: 10.1021/acs.cgd.4c00446
Hui-Min Tang, Zheng-Yang Quan, Bo Ding, Xiu-Guang Wang, Bo Tang, Zheng-Guo Huang* and En-Cui Yang*, 

Molecular crystals with desirable structures and tunable photoluminescence are highly important for multiscenario field applications as lasers, sensors, and light-emitting devices. However, purposeful controls on the photoluminescence are still challenging because of the high sensitivity of molecular stackings to molecular structures and surroundings. Herein, solid-state assembly and photoluminescent behavior of nine 5-(9H-carbazol-9-yl) isophthalic acid (CzIp)-based molecular crystals have been crystallographically, spectroscopically, and theoretically investigated by incorporation with electron-deficient acceptors and polar solvent molecules. As compared to the self-aggregation of green-emissive CzIp, methanol-solvated CzIp-CH3OH and hydrated CzIp-H2O exhibit tailorable structural overlaps for the π-stacked CzIp–CzIp dimers, emitting high-energy cyan and blue fluorescence upon excitation by UV light. These blue-shifted emissions are from different local excited states of the π-stacked dimers. By contrast, six cocrystals with 1:1 and 2:1 stoichiometry and/or cocrystallized solvent are constructed, respectively, from the π–π stacked CzIp-acceptor or CzIp–CzIp pairs, which are assembled into one-dimensional ribbons (for CzIp-OFN, CzIp-TCNB, CzIp-DCTFB, and CzIp-TCNQ, OFN = octafluoronaphthalene, TCNB = 1,2,4,5-tetracyanobenzene, DCTFB = 2,3,5,6-tetrafluoro-1,4-dicyanobenzene, and TCNQ = 7,7,8,8-tetracyanoquinodimethane), two-dimensional sheet (for CzIp-DITFB, DITFB = 1,4-diiodotetrafluorobenzene), and discrete cyclic tetramer (for CzIp-TND, TND = 1,4,5,8-naphthalenetetracarboxdiimide) through intermolecular hydrogen- and halogen-bonding interactions. These cocrystals emit switchable emissions from quenched fluorescence to intense blue, green, orange, and near-infrared photoluminescence. Further structural comparisons and theoretical calculations demonstrate that the wide-range multicolor luminescence is either from the local excited state or from the charge transfer, in which the π-stacked donor–acceptor pair, suitable energy levels, and band gap, as well as rational hole–electron distributions, manipulate synergistically the charge transfer-induced photoluminescence. These findings offer in-depth insights into the relationships of molecular stackings and photoluminescence, advancing the development of organic luminescence crystals with desirable optoelectronic properties.

具有理想结构和可调光致发光的分子晶体对于激光器、传感器和发光器件等多场景领域的应用非常重要。然而,由于分子堆积对分子结构和周围环境的高度敏感性,对光致发光进行有目的的控制仍然具有挑战性。本文通过与缺电子受体和极性溶剂分子的结合,对九种 5-(9H-咔唑-9-基)间苯二甲酸(CzIp)基分子晶体的固态组装和光致发光行为进行了晶体学、光谱学和理论研究。与绿色发射型 CzIp 的自聚集相比,甲醇溶解的 CzIp-CH3OH 和水合的 CzIp-H2O 显示出π堆叠 CzIp-CzIp 二聚体的可定制结构重叠,在紫外光激发下发出高能量的青色和蓝色荧光。这些蓝移发射来自 π 叠二聚体的不同局部激发态。相比之下,六种具有 1:1 和 2:相比之下,六种具有 1:1 和 2:1 配比和/或共晶溶剂的共晶体分别由 π-π 堆叠的 CzIp-acceptor 或 CzIp-CzIp 对构建而成、组装成一维带状(对于 CzIp-OFN、CzIp-TCNB、CzIp-DCTFB 和 CzIp-TCNQ,OFN = 八氟萘,TCNB = 1,2,4,5-四氰基苯,DCTFB = 2,3、CzIp-DITFB,DITFB = 1,4-二碘四氟苯)、二维薄片(CzIp-DITFB,DITFB = 1,4-二碘四氟苯)和离散环状四聚体(CzIp-TND,TND = 1,4,5,8-萘四甲酰二亚胺)。这些共晶体能发出从淬灭荧光到强烈的蓝色、绿色、橙色和近红外光致发光的可切换发射。进一步的结构比较和理论计算证明,这种宽范围的多色发光要么来自局部激发态,要么来自电荷转移,其中π堆叠的供体-受体对、合适的能级和带隙以及合理的空穴-电子分布协同操纵了电荷转移诱导的光致发光。这些发现深入揭示了分子堆积与光致发光之间的关系,推动了具有理想光电特性的有机发光晶体的发展。
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引用次数: 0
Structural Diversity of Iso-Maleonitrile Dithiolate d10s2 Metal Complexes of Lead and Bismuth 铅和铋的异马来腈二硫酸盐 d10s2 金属配合物的结构多样性
IF 3.8 2区 化学 Q1 Physics and Astronomy Pub Date : 2024-06-03 DOI: 10.1021/acs.cgd.4c00331
William W. L. Ho, Jefferson A. Pells and Daniel B. Leznoff*, 

The synthesis and solid-state structures of four structurally diverse i-mnt-based anionic complexes and coordination polymers are described (i-mnt = iso-maleonitrile dithiolate). (nPr4N)4[Pb2(i-mnt)4] is dimeric, containing a five-coordinate distorted square pyramidal Pb(II) center with a stereochemically active lone pair. The isoelectronic (nPr4N)[Bi(i-mnt)2] is a distorted six-coordinate complex that crystallizes in the polar P21 space group and forms a 2D coordination polymer via intermolecular Bi–N interactions; the d10s2 Bi(III) center also has a hemidirectional coordination sphere with a stereochemically active lone pair. Using the more compact (Me4N)+ cation, (Me4N)2[Pb(i-mnt)2] contains eight-coordinate holodirectional Pb(II) centers that form 1D chains via bridging Pb–S bonding. These anionic complexes could provide the foundation to incorporate stereochemically active lone pairs into heterometallic coordination polymers. As a comparison, (nPr4N)3Cr(i-mnt)3·H2O was also prepared and has a propeller structure with a typical octahedral Cr(III) center.

本文介绍了四种结构不同的基于 i-mnt 的阴离子配合物和配位聚合物(i-mnt = 异马来腈二硫酸盐)的合成和固态结构。(nPr4N)4[Pb2(i-mnt)4]是二聚体,含有一个五配位的畸变正方金字塔形铅(II)中心,并带有一个立体化学活性孤对。等电子(nPr4N)[Bi(i-mnt)2]是一种扭曲的六配位配合物,在极性 P21 空间群中结晶,并通过分子间的 Bi-N 相互作用形成二维配位聚合物;d10s2 Bi(III) 中心还具有一个半向配位球,并带有一个立体化学活性孤对。使用更紧凑的 (Me4N)+ 阳离子,(Me4N)2[Pb(i-mnt)2] 包含八个配位的全向 Pb(II) 中心,通过桥接 Pb-S 键形成一维链。这些阴离子配合物为将立体化学活性孤对纳入杂金属配位聚合物奠定了基础。作为对比,我们还制备了 (nPr4N)3Cr(i-mnt)3-H2O 复合物,其螺旋桨结构具有典型的八面体 Cr(III) 中心。
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引用次数: 0
Optimizing Link Prediction for the CSD Cocrystal Network: A Demonstration Using Praziquantel 优化 CSD Cocrystal 网络的链接预测:使用吡喹酮进行演示
IF 3.8 2区 化学 Q1 Physics and Astronomy Pub Date : 2024-06-03 DOI: 10.1021/acs.cgd.4c00438
Tom E. de Vries, Evi van Eert, Lucas Weevers, Paul Tinnemans, Elias Vlieg, Hugo Meekes and René de Gelder*, 

The physicochemical properties of chemical compounds can be altered and optimized by cocrystallization with a suitable coformer. However, discovering suitable coformers is a difficult and expensive process. Link prediction is one of the several techniques developed to predict suitable new coformers computationally. Link prediction uses a network of known coformers extracted from, e.g., the Cambridge Structural Database (CSD) to predict new cocrystals. We have investigated link prediction methods and were able to improve the performance of these methods using a scoring function called “multi-steps resource allocation”. Further improvements were obtained by examining the local structure of the network to remove imperfections and by using an algorithm previously designed by us to bipartise the network, thus removing imperfections on a global scale. By repeatedly predicting and synthesizing new cocrystals and adding them to the network to predict more new cocrystals, we obtain more and better predictions, but saturation of the local network eventually leads to diminishing returns. We demonstrate this for praziquantel (PZQ), a drug used to treat schistosomiasis. We discovered 11 new cocrystals for this compound, one of which is a racemic conglomerate that could be used to improve the medical efficacy of PZQ, and present 6 new cocrystal structures.

Link prediction for the CSD cocrystal network is optimized and iteratively applied to praziquantel.

通过与合适的共质体共结晶,可以改变和优化化合物的物理化学特性。然而,发现合适的共晶体是一个困难而昂贵的过程。链接预测是通过计算预测合适的新共晶的几种技术之一。链接预测使用从剑桥结构数据库(CSD)等中提取的已知共形物网络来预测新的共晶体。我们研究了链接预测方法,并利用一种名为 "多步资源分配 "的评分函数提高了这些方法的性能。通过检查网络的局部结构以消除不完善之处,以及使用我们之前设计的算法对网络进行双分化,从而在全局范围内消除不完善之处,我们的研究取得了进一步的改进。通过反复预测和合成新的化合物,并将其加入网络以预测更多新的化合物,我们获得了更多更好的预测结果,但局部网络的饱和最终会导致收益递减。我们以用于治疗血吸虫病的吡喹酮(PZQ)为例证明了这一点。我们为这种化合物发现了 11 种新的共晶体,其中一种是外消旋混合物,可用于提高 PZQ 的疗效,我们还展示了 6 种新的共晶体结构。
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引用次数: 0
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Crystal Growth & Design
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