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RNA-Seq Transcriptome Analysis of the Cutlass Fish Reveals Photoreceptors Gene Expression in Peripheral Tissues 弯刀鱼外周组织光感受器基因表达的RNA-Seq转录组分析
Q4 Engineering Pub Date : 2017-06-30 DOI: 10.4217/OPR.2017.39.2.149
Ji-Yeon Hyeon, Mun-Kwan Kim, B. Lim, Jun-Hwan Byun, Ji‐Sung Moon, Hyeong-Cheol Kang, Sung-Pyo Hur, Seong-Rip Oh
The opsin family of light sensitive proteins family makes up are the universal photoreceptor molecules of all visual systems in the vertebrates including teleosts. They can change their conformation from a resting state to a signaling state upon light absorption, which activates the G-protein couple...
视蛋白家族是包括硬骨鱼在内的脊椎动物所有视觉系统的普遍感光分子。它们可以在光吸收时将构象从静息状态改变为信号状态,从而激活G蛋白偶联。。。
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引用次数: 0
A Preliminary Study on UAV Photogrammetry for the Hyanho Coast Near the Military Reservation Zone, Eastern Coast of Korea 韩国东海岸军事保留区附近的咸和海岸无人机摄影测量的初步研究
Q4 Engineering Pub Date : 2017-06-30 DOI: 10.4217/OPR.2017.39.2.159
Baeck-Oon Kim, Kong-Hyun Yun, T. Chang, J. Bahk, Seong-Pil Kim
: To evaluate the accuracy of UAV photogrammetry for Hyangho coast, eastern coast of Korea, we conducted a field experiment wherein UAV photogrammetry test was repeated three times. Since the Haygho coast is located within a military reservation zone, it was necessary to obtain permission to gain access to the beach and to have sensitive aerial photographs showing military facilities inspected and cropped. The standard deviation of the UAV shooting position between the three tests was less than 1 m, but repeatability of footprint on the ground was low due to wind-driven variability of the UAV pose. Self-calibrating bundle adjustment(SCBA) of implementing non-metric camera calibration was failed in one test. In two tests, the vertical error was twice as large as the pixel size except for those areas that were subject to security inspection and cropping. Given the problems that can arise with regard to the repeatability of the shooting area as well as the possibility of failure with regard to SCBA, we strongly recommend that UAV photogrammetry in coastal areas needs to be repeated at least twice.
:为了评估无人机摄影测量在韩国东海岸清河海岸的准确性,我们进行了一项野外实验,其中无人机摄影测试重复了三次。由于海戈海岸位于军事保留区内,因此有必要获得进入海滩的许可,并获得显示军事设施被检查和裁剪的敏感航空照片。三次测试之间无人机射击位置的标准偏差小于1m,但由于无人机姿态的风力变化,地面足迹的可重复性较低。在一次测试中,实施非公制相机校准的自校准光束调整(SCBA)失败。在两次测试中,除了那些需要进行安全检查和裁剪的区域外,垂直误差是像素大小的两倍。考虑到拍摄区域的可重复性可能出现的问题以及SCBA失败的可能性,我们强烈建议沿海地区的无人机摄影测量至少需要重复两次。
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引用次数: 2
Sedimentary Facies and Architecture of a Gigantic Gravelly Submarine Channel System in a Cretaceous Foredeep Trough (the Magallanes Basin, Southern Chile) 智利南部麦哲伦盆地白垩系前深槽巨型砂质海底水道体系的沉积相与结构
Q4 Engineering Pub Date : 2017-06-30 DOI: 10.4217/OPR.2017.39.2.085
Moon Young Cheo, Young-Hwan G. Kim, H. Jo, Y. Sohn, J. Woo
: The Lago Sofia conglomerate in southern Chile is a deep-marine gravelly deposit, which is hundreds of meters thick and kilometers wide and extends laterally for more than 100 km, filling the foredeep trough of the Cretaceous Magallanes Basin. For understanding the depositional processes and environments of this gigantic deep-sea conglomerate, detailed analyses on sedimentary facies, architecture and paleoflow patterns were carried out, highlighting the differences between the northern (Lago Pehoe and Lago Goic areas) and southern (Lago Sofia area) parts of the study area. The conglomerate bodies in the northern part occur as relatively thin (< 100 m thick), multiple units intervened by thick mudstone-dom-inated sequences. They show paleoflows toward ENE and S to SW, displaying a converging drainage pattern. In the southern part, the conglomerate bodies are vertically interconnected and form a thick (> 400 m thick) conglomerate sequence with rare intervening fine-grained deposits. Paleoflows are toward SW. The north-to-south variations are also distinct in sedimentary facies. The conglomerate bodies in the southern part are mainly composed of clast-supported conglomerate with sandy matrix, which is interpreted to be deposited from highly concentrated bedload layers under turbidity currents. Those in the northern part are dominated by matrix- to clast-supported conglomerate with muddy matrix, which is interpreted as the products of composite mass flows comprising a turbidity current, a gravelly hyperconcentrated flow and a mud-rich debris flow. All these characteristics suggest that the Lago Sofia conglomerate was formed in centripetally converging submarine channels, not in centrifugally diverging channels of submarine fans. The tributaries in the north were dominated by mass flows, probably affected by channel-bank failures or basin-marginal slope instability processes. In contrast, the trunk channel in the south was mostly filled by tractive processes, which resulted in the vertical and lateral accretion of gravel bars, deposition of gravel dunes and filling of scours and channels, similar to deposits of terrestrial gravel-bed rivers. The trunk channel developed along the axis of foredeep trough and its confinement within the trough is probably responsible for the thick, interconnected channel fills. The large-scale architecture of the trunk-channel fills shows an eastward offset stacking pattern, suggesting that the channel migrated eastwards most likely due to the uplift of the Andean Cordillera.
智利南部的Lago Sofia砾岩是一个深海砾石矿床,厚数百米,宽公里,横向延伸超过100公里,填充了白垩纪麦哲伦盆地的前深槽。为了了解这一巨大深海砾岩的沉积过程和环境,对沉积相、结构和古水流模式进行了详细分析,突出了研究区北部(拉戈佩霍和拉戈戈维奇地区)和南部(拉戈索非亚地区)之间的差异。北部的砾岩体相对较薄(厚度<100m),多个单元由厚泥岩镶嵌序列介入。它们显示出向东北偏东和南向西南的古水流,显示出汇聚的排水模式。在南部,砾岩体垂直相互连接,形成厚(>400m厚)的砾岩序列,其间有罕见的细粒沉积物。古水流流向西南。沉积相的南北变化也很明显。南部的砾岩主体主要由砂质基质的碎屑支撑砾岩组成,被解释为在浊流作用下由高度集中的推移质层沉积而成。北部以基质-碎屑支撑的砾岩为主,基质为泥质,被解释为由浊流、砾石高浓度流和富泥碎屑流组成的复合物质流的产物。所有这些特征表明,索非亚湖砾岩形成于离心汇聚的海底通道中,而不是海底扇的离心分叉通道中。北部支流以质量流为主,可能受河道岸坡破坏或盆地边缘斜坡失稳过程的影响。相比之下,南部的主干河道大多由牵引过程填充,导致砾石坝的垂直和横向堆积、砾石沙丘的沉积以及冲刷和河道的填充,类似于陆地砾石床河流的沉积。沿前深槽轴线发育的主干通道及其在槽内的限制可能是厚的、相互连接的通道填充的原因。主干河道填土的大规模结构显示出向东偏移的堆积模式,这表明该河道向东迁移很可能是由于安第斯山脉的隆起。
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引用次数: 0
Community Structure of Macrobenthos around the Thermal Discharge Area of the Uljin Nuclear Power Plant in the East Sea, Korea 韩国东海乌尔津核电站热排放区周围大型底栖生物群落结构
Q4 Engineering Pub Date : 2017-06-30 DOI: 10.4217/OPR.2017.39.2.125
Soon Hyun Kwon, O. Yu, Hyung-Gon Lee
This study analyzed the community structure of macrobenthic organisms in the subtidal area suffering under the influence of thermal discharge from the Uljin nuclear power plant during 2012-2013 and reviewed the temporal change in the faunal composition of the macrobenthic community using data from p...
本研究分析了乌尔津核电站2012-2013年受热排放影响的潮下带大型底栖生物群落结构,并利用文献资料回顾了大型底栖动物群落区系组成的时间变化。。。
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引用次数: 4
Ichthyoplankton Detection Proportion and Margin of Error for the Scomber japonicus in Korean Coastal Seas 韩国近海刺参浮游鱼类的检测比例和误差幅度
Q4 Engineering Pub Date : 2017-06-30 DOI: 10.4217/OPR.2017.39.2.073
Sung Kim, Hong-Yeon Cho
The probability distribution of ichthyoplankton is important for enhancing the precision of sampling while reducing unnecessary surveys. To estimate the ichthyoplankton detection proportion (IDP) and its margin of error (ME), the monitoring information of the chub mackerel’s (Scomber japonicus) ichthyoplankton presence-absence sampling data has been were collected over approximately 30 years (from 1982 to 2011) in the Korean coastal seas. Based on the computed spatial distributions of the mackerel’s IDP and ME, the confidence interval (CI) range, defined as 2 ME, decreases from approximately 80% to 40% as the sample size n increases from 4 to 24 and the ME is approximately 40% in the typical (seasonal survey) case n = 4 per year. The IDP and ME off Jeju Island are relatively high at the 0.5degree smoothing level. After increasing the spatial smoothing level to 1.0-degree, the ME decreased, and the spatial distribution pattern also changed due to the over-smoothing effects. In this study, the 0.5-degree smoothing is more suitable for the distribution pattern than the 1.0-degree smoothing level. The area of the high IDP and the low ME on the mackerel’s ichthyoplankton was similar to the estimated spawning ground in the Korean peninsula. This information could contribute to enhancing for the spawning ecology surveys.
浮游生物的概率分布对于提高采样精度和减少不必要的调查非常重要。为了估计鱼类浮游生物的检测比例(IDP)及其误差范围(ME),在大约30年(1982年至2011年)的时间里,在韩国沿海海域收集了有无鲢鱼(Scomber japonicus)鱼类浮游生物的监测信息采样数据。根据计算的鲭鱼IDP和ME的空间分布,置信区间(CI)范围,定义为2ME,随着样本量n从4增加到24,置信区间从大约80%减少到40%,在典型的(季节性调查)情况下,ME大约为40%,每年n=4。济州岛附近的IDP和ME在0.5度平滑水平下相对较高。在将空间平滑级别增加到1.0度之后,ME降低,并且空间分布模式也由于过平滑效应而改变。在本研究中,0.5度平滑比1.0度平滑更适合分布模式。鲭鱼浮游生物的高IDP和低ME区域与朝鲜半岛的估计产卵场相似。这些信息有助于加强产卵生态调查。
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引用次数: 0
Effects of Various Light Spectra on Physiological Stress and DNA Damage by Thermal Stress in Juvenile Rock Bream (Oplegnathus fasciatus) 不同光谱对岩鲷幼鱼生理应激及热应激对DNA损伤的影响
Q4 Engineering Pub Date : 2017-06-30 DOI: 10.4217/OPR.2017.39.2.107
Jong Ryeol Choe, Yoonjae Shin, Ji Yong Choi, Tae Hwan Kim, Dae-Ran Kim, C. Choi
: In this study, we investigated the effects of light spectra on physiology stress and DNA damage in juvenile rock bream ( Oplegnathus fasciatus ) using light-emitting diodes (LEDs; green, 520 nm; red, 630 nm) at two intensities (0.25 and 0.5 W/m 2 ) with application of thermal stress (25 and 30 o C). We measured the mRNA expression of heat shock protein 70 ( HSP70 ) and the levels of plasma cortisol, glucose, aspartate aminotransferase (AspAT), and alanine aminotransferase (AlaAT). Additionally, DNA damage was measured using comet assays. Our findings showed that HSP70 mRNA expression and plasma cortisol, glucose, AspAT, and AlaAT levels were significantly higher after exposure to high temperatures and were significantly lower after exposure to green LED light. Thus, although high water temperatures induced stress in juvenile rock bream, green LED light inhibited stress. In particular, green LED light reduced stress and DNA damage to a greater degree than other light sources.
:在本研究中,我们使用发光二极管(LED;绿色,520 nm;红色,630 nm)在两种强度(0.25和0.5 W/m2)下,在施加热应力(25和30°C)的情况下,研究了光谱对岩鲷幼鱼生理应力和DNA损伤的影响。我们测量了热休克蛋白70(HSP70)的mRNA表达以及血浆皮质醇、葡萄糖、天冬氨酸转氨酶(AspAT)和丙氨酸转氨酶(AlaAT)的水平。此外,DNA损伤是用彗星测定法测量的。我们的研究结果表明,暴露于高温后,HSP70 mRNA表达和血浆皮质醇、葡萄糖、AspAT和AlaAT水平显著升高,暴露于绿色LED灯后显著降低。因此,尽管高水温诱导了岩鲷幼鱼的应激,但绿色LED灯抑制了应激。特别是,与其他光源相比,绿色LED灯在更大程度上减少了压力和DNA损伤。
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引用次数: 2
Analysis on Economies of Scale in Offshore Fishery Using a Translog Cost Function 基于Translog成本函数的近海渔业规模经济分析
Q4 Engineering Pub Date : 2017-03-30 DOI: 10.4217/OPR.2017.39.1.061
Yongmin Shin, Seonghyun Sim
This study estimates the cost function through offshore fishery cost data and analyzed the economies of scale of Korea’s offshore fishery. For the estimation of the cost function, translog cost function was used, and the analysis implemented the panel analysis of the panel data. Also, annual economies of scale of the offshore fishery and economies of scale of 14 offshore fisheries in 2015 were analyzed using translog cost function coefficient estimation. The analysis result of economies of scale of Korea’s offshore fishery showed that with the exception of 2003, economies of scale exist in all periods of time. However, as it almost reaches the minimum efficient scale, it was revealed that further scale expansion will bring inefficiency. Thus, according to the analysis result, Korea’s offshore fishery requires a scale reduction policy rather than scale expansion policy, and this seems to coincide with the current government’s fishery reconstruction policy and its practice such as the fishing vessel buyback program. The analysis result of economies of scale of each offshore fishery in 2015 showed that economies of scale of each offshore fishery exists with the exception of five trawl fisheries such as large pair-trawl and large otter trawl and large purse seines. This strongly suggests that the five fisheries and Large Purse Seines with non performing economies of scale need urgent scale reduction and should be the first target for the government’s fishery reconstruction policy.
本研究通过近海渔业成本数据估算了成本函数,并分析了韩国近海渔业的规模经济。对于成本函数的估计,使用了translog成本函数,该分析实现了面板数据的面板分析。此外,使用translog成本函数系数估计对2015年近海渔业的年度规模经济和14个近海渔业的规模经济进行了分析。韩国近海渔业规模经济分析结果表明,除2003年外,所有时期都存在规模经济。然而,由于它几乎达到了最低有效规模,进一步的规模扩张将带来低效率。因此,根据分析结果,韩国近海渔业需要规模缩小政策,而不是规模扩大政策,这似乎与当前政府的渔业重建政策及其渔船回购计划等做法相吻合。2015年各近海渔业规模经济分析结果显示,除大型对拖网、大型水獭拖网、大型围网等5种拖网渔业外,各近海渔业均存在规模经济。这有力地表明,规模经济表现不佳的五个渔场和塞纳河大浅滩急需缩减规模,应成为政府渔业重建政策的首要目标。
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引用次数: 0
섬진강 하구역에 서식하는 대형저서동물군집의 분포양상 栖息在蟾津江河口地区的大型底栖动物群落的分布情况
Q4 Engineering Pub Date : 2017-03-30 DOI: 10.4217/OPR.2017.39.1.023
서진영, 김정현, 최진우
This study was carried out to investigate the spatial distributions of the macrobenthic communities in the Seomjin River estuary from May, 2015 to May, 2016. The number of species was 163, the mean density was 1,865 ind.m -2 , biomass was 204 g·wet m -2 during this study period. The highest number of species and density appeared among polychaetes whereas the most biomass was contributed by mollusks due to the presence of Corbicula japonica in every season. The study area was divided into 3 regions with similar benthic fauna responding to the gradient of the salinity. Praxillella praetermissa was the dominant species in regions of over 30 psu during all seasons. C. japonica and Hediste diadroma were dominant in the upper regions of the Seomjin River where the salinity was less than 10 psu. Heteromastus filiformis showed the broadest distributional range and dominated in all seasons except for the most upper stream at st. 7. From the result of the Bio-Env analysis, salinity was the most important environmental factor affecting the formation of macrobenthic communities in the study area, and salinity and TOC were the highest contributors to the macrobenthic communities. From the correlation analysis between major dominant species and environmental factors, C. japonica, Prionospio japonica and H. diadroma showed a negative correlation with salinity, while P. praetermissa and Scolectoma longifolia showed a positive correlation. H. filiformis was little affected by salinity but showed a positive correlation with TOC or silt content of sediment.
本研究旨在调查2015年5月至2016年5月Seomjin河口大型底栖动物群落的空间分布。在本研究期间,物种数量为163种,平均密度为1865 ind.m-2,生物量为204 g·湿m-2。物种数量和密度最高的是多毛类,而软体动物贡献的生物量最多,这是因为每个季节都有黑蝶的存在。研究区域被划分为3个区域,具有相似的底栖动物对盐度梯度的反应。Praxillella praetermissa是30多个psu地区的优势种。在盐度低于10psu的Seomjin河上游地区,C.japonica和Hediste diadroma占主导地位。丝状异乳鱼的分布范围最广,除最上游的7号河流外,其他季节均占优势。根据Bio-Env分析结果,盐度是影响研究区大型底栖生物群落形成的最重要的环境因素,盐度和TOC是大型底栖动物群落的最高贡献者。从主要优势种与环境因子的相关性分析来看,C.japonica、Prionospio japonica和H.diadroma与盐度呈负相关,P.praetermissa和Scolectoma longifolia与盐度呈正相关。丝状H.filiformis不受盐度的影响,但与沉积物的TOC或含泥量呈正相关。
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引用次数: 2
Isolation of 6,6`-Bieckol from Grateloupia elliptica and its Antioxidative and Anti-Cholinesterase Activity 椭圆豆中6,6′-Bieckol的分离及其抗氧化和抗胆碱酯酶活性研究
Q4 Engineering Pub Date : 2017-03-30 DOI: 10.4217/OPR.2017.39.1.045
Bong-Ho Lee, B. Choi, Soo Young Lee
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引用次数: 3
Distributions and Sources of Dissolved Organic Matter in Seawaters Surrounding Aqua Farms on the Haengwon-ri in Jeju-Island in Summer 2015 2015年夏季济州岛韩原里水产养殖场周围海域溶解有机物的分布和来源
Q4 Engineering Pub Date : 2017-03-30 DOI: 10.4217/OPR.2017.39.1.035
Jeonghyun Kim, Taehoon Kim
Concentrations of dissolved organic carbon (DOC), dissolved organic nitrogen (DON), dissolved organic phosphate (DOP), and colored dissolved organic matter (CDOM) were measured in the coastal sea off inland aqua farms in northeastern Jeju Island in summer 2015. The highest concentrations of DOC, DON, and DOP were revealed in the surface water off Hado-ri where the lowest salinity conditions prevailed (31.6). The concentrations of DOC, DON, and DOP in the surface water were lower in the inner stations (SH1-1, 1-2, and 1-3) near the aqua farms of the Haengwon-ri than in the outer stations. The concentrations of DOC, DON, and DOP negatively correlated with salinity. These results indicate that the contribution of dissolved organic matter (DOM) from the aqua farms seems to be not significant. On the other hand, the higher concentrations of DON and DOP in the inner stations of Hado-ri (HD 1-1) seem to be attributed to excrement of migrating birds. The three components of CDOM (T, M, and C peaks) showed no relationship with salinity, perhaps due to various in situ productions by marine organisms and decomposition by ultraviolet radiation. The observed lower C:M ratio, an indicator of terrestrial source, and the higher biological index (BIX) of CDOM in the station off Hado-ri indicate that DOM is produced mainly by biological activity. Based on the higher humification index (HIX) of CDOM and the higher DOC:DON ratio off Haengwon-ri, refractory DOM in the inland aqua farms is likely transported to the coastal sea.
2015年夏季测定了济州岛东北部内陆水产养殖场近岸海水中溶解有机碳(DOC)、溶解有机氮(DON)、溶解有机磷酸盐(DOP)和彩色溶解有机质(CDOM)的浓度。DOC、DON和DOP的最高浓度出现在盐度最低的下道里附近的地表水(31.6)。行原里水产养殖场附近的内站(SH1-1、1-2和1-3)地表水中DOC、DON和DOP浓度均低于外站。DOC、DON和DOP浓度与盐度呈负相关。这些结果表明,来自水产养殖场的溶解性有机物(DOM)的贡献似乎不显著。另一方面,下道里内站(hd1 -1)的DON和DOP浓度较高可能是由于候鸟的粪便所致。CDOM的三个组分(T、M和C峰)与盐度无关,这可能是由于海洋生物的各种原位生产和紫外线辐射的分解。下道里站CDOM的C:M比值较低,生物指数(BIX)较高,表明DOM主要由生物活性产生。从CDOM较高的腐殖化指数(HIX)和行原里较高的DOC:DON比率来看,内陆水产养殖场的难降解DOM很可能被输送到沿海海域。
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引用次数: 3
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Ocean and Polar Research
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